Wall clock time and date at job start Tue Mar 31 2020 04:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47061 * 351.35456 * 3 2 1 5 5 C 1.36936 * 119.99467 * 273.33297 * 4 3 2 6 6 H 1.08006 * 119.99385 * 187.23776 * 5 4 3 7 7 C 1.38806 * 120.00514 * 7.24041 * 5 4 3 8 8 N 1.31624 * 120.00160 * 25.59954 * 7 5 4 9 9 Si 1.86802 * 120.00163 * 205.60564 * 7 5 4 10 10 H 1.48502 * 109.46911 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47469 * 119.99732 * 9 7 5 12 12 H 1.48506 * 109.47220 * 239.99671 * 9 7 5 13 13 S 1.65600 * 120.00150 * 93.33266 * 4 3 2 14 14 O 1.42098 * 106.39948 * 156.45753 * 13 4 3 15 15 O 1.42104 * 106.39892 * 23.53909 * 13 4 3 16 16 C 1.76193 * 107.21896 * 269.99800 * 13 4 3 17 17 C 1.38245 * 119.99164 * 270.25553 * 16 13 4 18 18 C 1.38221 * 120.00649 * 180.30066 * 17 16 13 19 19 C 1.38319 * 119.99403 * 359.46469 * 18 17 16 20 20 Br 1.89098 * 120.01151 * 180.27676 * 19 18 17 21 21 C 1.38332 * 119.97918 * 0.25671 * 19 18 17 22 22 C 1.38216 * 119.98945 * 0.02562 * 21 19 18 23 23 H 1.08996 * 109.47163 * 231.35530 * 3 2 1 24 24 H 1.09001 * 109.46940 * 111.34995 * 3 2 1 25 25 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 26 26 H 1.07993 * 119.99486 * 0.02562 * 17 16 13 27 27 H 1.08001 * 119.99857 * 179.74919 * 18 17 16 28 28 H 1.07997 * 120.00480 * 180.02562 * 21 19 18 29 29 H 1.07996 * 119.99744 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3647 0.2076 5 6 3.2603 -1.8475 1.4786 6 1 3.7294 -2.8077 1.6353 7 6 2.8232 -1.1029 2.5655 8 7 1.8472 -0.2324 2.4171 9 14 3.6202 -1.3363 4.2388 10 1 4.6850 -2.3668 4.1405 11 1 4.2141 -0.0514 4.6878 12 1 2.5947 -1.7766 5.2184 13 16 3.4520 -2.3241 -1.0946 14 8 4.3773 -3.2992 -0.6341 15 8 3.7234 -1.4455 -2.1780 16 6 1.9800 -3.1954 -1.5173 17 6 1.7134 -4.4227 -0.9395 18 6 0.5618 -5.1093 -1.2755 19 6 -0.3293 -4.5633 -2.1816 20 35 -1.9087 -5.4987 -2.6358 21 6 -0.0649 -3.3326 -2.7552 22 6 1.0897 -2.6493 -2.4231 23 1 2.9710 0.6426 0.8026 24 1 2.9711 0.3750 -0.9572 25 1 1.5420 0.2882 3.1765 26 1 2.4071 -4.8469 -0.2288 27 1 0.3556 -6.0699 -0.8271 28 1 -0.7606 -2.9057 -3.4624 29 1 1.2965 -1.6887 -2.8711 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000029870.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:37 Heat of formation + Delta-G solvation = -0.100590 kcal Electronic energy + Delta-G solvation = -19944.734034 eV Core-core repulsion = 16621.180239 eV Total energy + Delta-G solvation = -3323.553795 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 343.962 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -38.77812 -36.85320 -36.11305 -34.69069 -34.56039 -32.25195 -31.90119 -30.82595 -29.11292 -27.64614 -24.26933 -22.60087 -22.33337 -18.82766 -18.28127 -17.57083 -16.78507 -16.26874 -15.34865 -15.29353 -14.78401 -14.43352 -14.21844 -13.63282 -13.31496 -13.22234 -13.00465 -12.48984 -12.00678 -11.79966 -11.62557 -11.53208 -11.22476 -11.16484 -11.00704 -10.93624 -10.87759 -10.67259 -10.41569 -10.27149 -10.23454 -10.08280 -9.74457 -8.79765 -8.75887 -8.58990 -6.92609 -4.23146 0.96186 1.43549 1.54625 1.64641 2.95648 3.05552 3.12993 3.49927 3.75620 3.84670 4.03595 4.38100 4.46017 4.81928 4.89506 5.06309 5.20995 5.32387 5.56227 5.75896 5.83465 5.98543 6.16583 6.20141 6.31902 6.36963 6.53913 6.75457 7.01836 7.03556 7.89827 8.28803 8.71229 8.77068 10.06088 Molecular weight = 343.96amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.004259 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.344040 B = 6573.420784 C = 6892.460638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.239 3.761 3 C 0.223 3.777 4 N -0.793 5.793 5 C -0.241 4.241 6 H 0.130 0.870 7 C 0.031 3.969 8 N -0.829 5.829 9 Si 0.937 3.063 10 H -0.258 1.258 11 H -0.272 1.272 12 H -0.278 1.278 13 S 2.528 3.472 14 O -0.974 6.974 15 O -0.991 6.991 16 C -0.646 4.646 17 C -0.019 4.019 18 C -0.118 4.118 19 C -0.058 4.058 20 Br -0.062 7.062 21 C -0.115 4.115 22 C -0.025 4.025 23 H 0.133 0.867 24 H 0.104 0.896 25 H 0.283 0.717 26 H 0.143 0.857 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 -4.716 -4.376 6.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.152 5.152 2 C -0.081 4.081 3 C 0.094 3.906 4 N -0.616 5.616 5 C -0.389 4.389 6 H 0.148 0.852 7 C -0.182 4.182 8 N -0.468 5.468 9 Si 0.761 3.239 10 H -0.182 1.182 11 H -0.197 1.197 12 H -0.204 1.204 13 S 2.626 3.374 14 O -0.963 6.963 15 O -0.980 6.980 16 C -0.723 4.723 17 C -0.039 4.039 18 C -0.138 4.138 19 C -0.138 4.138 20 Br 0.023 6.977 21 C -0.136 4.136 22 C -0.045 4.045 23 H 0.151 0.849 24 H 0.122 0.878 25 H 0.095 0.905 26 H 0.161 0.839 27 H 0.150 0.850 28 H 0.148 0.852 29 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.288 -5.126 -5.209 8.474 hybrid contribution -0.208 -0.225 1.009 1.055 sum -4.496 -5.351 -4.200 8.154 Atomic orbital electron populations 1.80890 1.13620 1.07911 1.12769 1.29497 0.95608 0.93116 0.89837 1.19038 0.81249 0.86397 1.03952 1.55576 1.71337 1.16259 1.18393 1.20327 1.30321 1.08041 0.80213 0.85224 1.25653 0.94817 0.96817 1.00906 1.69949 1.20746 1.22710 1.33399 0.85672 0.79454 0.79342 0.79422 1.18179 1.19728 1.20399 1.11790 0.78330 0.73070 0.74196 1.93379 1.61671 1.60819 1.80465 1.93367 1.85542 1.64457 1.54672 1.32693 1.26420 1.08018 1.05177 1.20906 0.95125 0.92255 0.95622 1.21193 0.94403 1.00605 0.97616 1.21876 0.93658 0.96801 1.01425 1.96651 1.32637 1.75555 1.92850 1.21151 0.98187 0.93660 1.00588 1.20857 0.91588 0.98601 0.93439 0.84933 0.87836 0.90544 0.83919 0.85027 0.85160 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.77 18.54 42.15 0.78 -9.99 15 2 C 0.24 5.04 13.29 -20.76 -0.28 4.76 15 3 C 0.22 4.24 5.45 -6.83 -0.04 4.21 15 4 N -0.79 -16.40 2.88 -62.77 -0.18 -16.58 15 5 C -0.24 -5.15 9.47 -15.06 -0.14 -5.29 15 6 H 0.13 2.73 7.22 -52.48 -0.38 2.36 15 7 C 0.03 0.64 4.90 -17.43 -0.09 0.56 15 8 N -0.83 -17.98 8.99 55.49 0.50 -17.49 15 9 Si 0.94 16.62 29.62 -169.99 -5.04 11.59 15 10 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 11 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 12 H -0.28 -5.09 7.11 56.52 0.40 -4.69 15 13 S 2.53 52.54 5.65 -107.50 -0.61 51.93 15 14 O -0.97 -22.07 16.06 -57.17 -0.92 -22.99 15 15 O -0.99 -21.35 15.85 -57.17 -0.91 -22.25 15 16 C -0.65 -12.64 5.97 -39.57 -0.24 -12.88 15 17 C -0.02 -0.35 9.52 -39.58 -0.38 -0.73 15 18 C -0.12 -1.95 9.79 -39.56 -0.39 -2.33 15 19 C -0.06 -0.96 6.22 -39.52 -0.25 -1.20 15 20 Br -0.06 -0.86 33.70 -68.01 -2.29 -3.15 15 21 C -0.12 -1.95 9.79 -39.55 -0.39 -2.34 15 22 C -0.02 -0.46 9.52 -39.59 -0.38 -0.84 15 23 H 0.13 2.43 6.47 -51.93 -0.34 2.10 15 24 H 0.10 1.71 6.95 -51.93 -0.36 1.35 15 25 H 0.28 5.89 8.31 -40.82 -0.34 5.55 15 26 H 0.14 2.45 7.62 -52.49 -0.40 2.05 15 27 H 0.13 1.82 8.06 -52.49 -0.42 1.40 15 28 H 0.13 1.90 8.06 -52.49 -0.42 1.47 15 29 H 0.14 2.38 7.62 -52.49 -0.40 1.98 15 LS Contribution 296.86 15.07 4.47 4.47 Total: -1.00 -26.91 296.86 -8.59 -35.51 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -1.86 Total: 5.04 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -2.55 Total: -16.08 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 1.10 Total: -44.06 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.82 Total: -45.24 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.04 Total: 11.59 kcal Atomic # 16 Polarization: 52.54 SS G_CDS: -0.61 Total: 51.93 kcal Atomic # 35 Polarization: -0.86 SS G_CDS: -2.29 Total: -3.15 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.91 -8.59 -35.51 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000029870.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.408 kcal (2) G-P(sol) polarization free energy of solvation -26.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds