Wall clock time and date at job start Tue Mar 31 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46506 * 109.47061 * 351.35456 * 3 2 1 5 5 C 1.36936 * 119.99467 * 273.33297 * 4 3 2 6 6 H 1.08006 * 119.99385 * 187.23776 * 5 4 3 7 7 C 1.38806 * 120.00514 * 7.24041 * 5 4 3 8 8 N 1.31624 * 120.00160 * 25.59954 * 7 5 4 9 9 Si 1.86802 * 120.00163 * 205.60564 * 7 5 4 10 10 H 1.48502 * 109.46911 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47469 * 119.99732 * 9 7 5 12 12 H 1.48506 * 109.47220 * 239.99671 * 9 7 5 13 13 S 1.65600 * 120.00150 * 93.33266 * 4 3 2 14 14 O 1.42098 * 106.39948 * 156.45753 * 13 4 3 15 15 O 1.42104 * 106.39892 * 23.53909 * 13 4 3 16 16 C 1.76193 * 107.21896 * 269.99800 * 13 4 3 17 17 C 1.38245 * 119.99164 * 270.25553 * 16 13 4 18 18 C 1.38221 * 120.00649 * 180.30066 * 17 16 13 19 19 C 1.38319 * 119.99403 * 359.46469 * 18 17 16 20 20 Br 1.89098 * 120.01151 * 180.27676 * 19 18 17 21 21 C 1.38332 * 119.97918 * 0.25671 * 19 18 17 22 22 C 1.38216 * 119.98945 * 0.02562 * 21 19 18 23 23 H 1.08996 * 109.47163 * 231.35530 * 3 2 1 24 24 H 1.09001 * 109.46940 * 111.34995 * 3 2 1 25 25 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 26 26 H 1.07993 * 119.99486 * 0.02562 * 17 16 13 27 27 H 1.08001 * 119.99857 * 179.74919 * 18 17 16 28 28 H 1.07997 * 120.00480 * 180.02562 * 21 19 18 29 29 H 1.07996 * 119.99744 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0970 -1.3647 0.2076 5 6 3.2603 -1.8475 1.4786 6 1 3.7294 -2.8077 1.6353 7 6 2.8232 -1.1029 2.5655 8 7 1.8472 -0.2324 2.4171 9 14 3.6202 -1.3363 4.2388 10 1 4.6850 -2.3668 4.1405 11 1 4.2141 -0.0514 4.6878 12 1 2.5947 -1.7766 5.2184 13 16 3.4520 -2.3241 -1.0946 14 8 4.3773 -3.2992 -0.6341 15 8 3.7234 -1.4455 -2.1780 16 6 1.9800 -3.1954 -1.5173 17 6 1.7134 -4.4227 -0.9395 18 6 0.5618 -5.1093 -1.2755 19 6 -0.3293 -4.5633 -2.1816 20 35 -1.9087 -5.4987 -2.6358 21 6 -0.0649 -3.3326 -2.7552 22 6 1.0897 -2.6493 -2.4231 23 1 2.9710 0.6426 0.8026 24 1 2.9711 0.3750 -0.9572 25 1 1.5420 0.2882 3.1765 26 1 2.4071 -4.8469 -0.2288 27 1 0.3556 -6.0699 -0.8271 28 1 -0.7606 -2.9057 -3.4624 29 1 1.2965 -1.6887 -2.8711 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000029870.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:36 Heat of formation + Delta-G solvation = -15.355726 kcal Electronic energy + Delta-G solvation = -19945.395546 eV Core-core repulsion = 16621.180239 eV Total energy + Delta-G solvation = -3324.215307 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 343.962 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.13714 -38.45586 -37.84253 -36.43413 -36.25044 -33.56856 -33.49256 -32.18480 -30.42415 -29.22563 -25.88399 -23.96786 -23.74751 -20.42799 -19.87056 -19.10351 -18.42117 -17.83242 -16.85027 -16.71041 -16.32100 -15.93505 -15.61352 -15.25039 -14.78578 -14.62038 -14.43970 -14.09020 -13.57491 -13.28048 -13.22894 -13.18529 -12.83253 -12.74102 -12.60035 -12.47742 -12.22105 -12.10544 -12.01920 -11.79344 -11.65852 -11.44847 -11.29307 -10.25086 -10.16001 -10.02949 -8.49460 -5.88171 -0.47115 -0.14483 0.17898 0.36915 1.53618 1.61448 1.73392 1.92561 2.30218 2.32644 2.41167 2.77387 2.86981 3.18287 3.51169 3.64273 3.78285 3.81210 4.20642 4.33125 4.47336 4.49814 4.81158 4.82497 4.86061 4.96848 5.10943 5.22028 5.43490 5.66354 6.29583 6.69715 7.11030 7.11714 8.49604 Molecular weight = 343.96amu Principal moments of inertia in cm(-1) A = 0.015993 B = 0.004259 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.344040 B = 6573.420784 C = 6892.460638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C 0.252 3.748 3 C 0.221 3.779 4 N -0.803 5.803 5 C -0.268 4.268 6 H 0.126 0.874 7 C 0.008 3.992 8 N -0.855 5.855 9 Si 0.991 3.009 10 H -0.258 1.258 11 H -0.267 1.267 12 H -0.286 1.286 13 S 2.554 3.446 14 O -0.995 6.995 15 O -1.000 7.000 16 C -0.667 4.667 17 C -0.033 4.033 18 C -0.117 4.117 19 C -0.064 4.064 20 Br -0.031 7.031 21 C -0.119 4.119 22 C -0.038 4.038 23 H 0.140 0.860 24 H 0.129 0.871 25 H 0.283 0.717 26 H 0.147 0.853 27 H 0.159 0.841 28 H 0.153 0.847 29 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.197 -5.409 -4.672 7.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.066 4.066 3 C 0.092 3.908 4 N -0.626 5.626 5 C -0.414 4.414 6 H 0.143 0.857 7 C -0.202 4.202 8 N -0.494 5.494 9 Si 0.814 3.186 10 H -0.181 1.181 11 H -0.191 1.191 12 H -0.212 1.212 13 S 2.654 3.346 14 O -0.985 6.985 15 O -0.990 6.990 16 C -0.747 4.747 17 C -0.053 4.053 18 C -0.137 4.137 19 C -0.143 4.143 20 Br 0.054 6.946 21 C -0.139 4.139 22 C -0.058 4.058 23 H 0.158 0.842 24 H 0.146 0.854 25 H 0.094 0.906 26 H 0.165 0.835 27 H 0.176 0.824 28 H 0.171 0.829 29 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.777 -5.800 -5.480 9.300 hybrid contribution -0.145 -0.130 0.935 0.955 sum -4.923 -5.931 -4.545 8.948 Atomic orbital electron populations 1.80877 1.14634 1.09021 1.14100 1.29874 0.95958 0.92066 0.88731 1.19282 0.80087 0.85905 1.05521 1.55303 1.72264 1.16947 1.18073 1.20380 1.31918 1.08391 0.80717 0.85697 1.26195 0.94705 0.96351 1.02963 1.69997 1.21679 1.23744 1.34010 0.84877 0.78359 0.79294 0.76071 1.18112 1.19132 1.21200 1.10306 0.77884 0.72719 0.73727 1.93354 1.62645 1.61519 1.80948 1.93352 1.85854 1.64873 1.54925 1.32394 1.26174 1.09107 1.07040 1.21097 0.96174 0.92179 0.95878 1.21494 0.93559 1.01409 0.97251 1.22169 0.94654 0.96838 1.00689 1.96682 1.30565 1.74743 1.92577 1.21438 0.97948 0.93803 1.00735 1.21022 0.92183 0.99102 0.93520 0.84238 0.85367 0.90585 0.83513 0.82358 0.82932 0.84039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.98 18.54 20.01 0.37 -22.61 15 2 C 0.25 10.58 13.29 89.44 1.19 11.76 15 3 C 0.22 8.30 5.45 84.57 0.46 8.76 15 4 N -0.80 -33.01 2.88 -352.51 -1.02 -34.02 15 5 C -0.27 -11.46 9.47 84.03 0.80 -10.67 15 6 H 0.13 5.33 7.22 -2.91 -0.02 5.31 15 7 C 0.01 0.32 4.90 84.86 0.42 0.74 15 8 N -0.85 -36.98 8.99 21.65 0.19 -36.78 15 9 Si 0.99 33.75 29.62 68.60 2.03 35.78 15 10 H -0.26 -8.64 7.11 99.48 0.71 -7.93 15 11 H -0.27 -8.77 7.11 99.48 0.71 -8.06 15 12 H -0.29 -10.02 7.11 99.48 0.71 -9.32 15 13 S 2.55 105.28 5.65 -56.49 -0.32 104.97 15 14 O -0.99 -45.03 16.06 -128.00 -2.06 -47.09 15 15 O -1.00 -42.38 15.85 -128.00 -2.03 -44.41 15 16 C -0.67 -25.69 5.97 22.27 0.13 -25.56 15 17 C -0.03 -1.19 9.52 22.27 0.21 -0.98 15 18 C -0.12 -3.64 9.79 22.29 0.22 -3.42 15 19 C -0.06 -1.95 6.22 22.31 0.14 -1.81 15 20 Br -0.03 -0.78 33.70 -20.37 -0.69 -1.46 15 21 C -0.12 -3.80 9.79 22.29 0.22 -3.58 15 22 C -0.04 -1.37 9.52 22.27 0.21 -1.16 15 23 H 0.14 5.06 6.47 -2.39 -0.02 5.05 15 24 H 0.13 4.10 6.95 -2.39 -0.02 4.09 15 25 H 0.28 11.75 8.31 -92.71 -0.77 10.98 15 26 H 0.15 4.98 7.62 -2.91 -0.02 4.96 15 27 H 0.16 3.96 8.06 -2.91 -0.02 3.94 15 28 H 0.15 4.08 8.06 -2.91 -0.02 4.05 15 29 H 0.14 4.81 7.62 -2.91 -0.02 4.79 15 Total: -1.00 -55.38 296.86 1.69 -53.68 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 1.21 Total: 17.86 kcal Atomic # 6 Polarization: -29.91 SS G_CDS: 3.99 Total: -25.92 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -0.45 Total: -93.42 kcal Atomic # 8 Polarization: -87.41 SS G_CDS: -4.08 Total: -91.49 kcal Atomic # 14 Polarization: 33.75 SS G_CDS: 2.03 Total: 35.78 kcal Atomic # 16 Polarization: 105.28 SS G_CDS: -0.32 Total: 104.97 kcal Atomic # 35 Polarization: -0.78 SS G_CDS: -0.69 Total: -1.46 kcal Total: -55.38 1.69 -53.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000029870.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.329 kcal (2) G-P(sol) polarization free energy of solvation -55.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds