Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38167 * 120.02169 * 2 1 4 4 C 1.38340 * 120.04634 * 179.97438 * 3 2 1 5 5 Cl 1.73591 * 119.96179 * 180.02562 * 4 3 2 6 6 C 1.38395 * 120.08045 * 359.73072 * 4 3 2 7 7 C 1.38124 * 120.04193 * 0.54947 * 6 4 3 8 8 C 1.38699 * 120.01949 * 179.97438 * 2 1 3 9 9 O 1.35919 * 120.04330 * 0.02562 * 8 2 1 10 10 C 1.42902 * 116.99512 * 180.02562 * 9 8 2 11 11 C 1.50704 * 109.46672 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00170 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99791 * 180.02562 * 11 10 9 14 14 C 1.39234 * 119.99638 * 175.70977 * 13 11 10 15 15 C 1.39478 * 119.83009 * 215.00940 * 14 13 11 16 16 C 1.36384 * 120.16849 * 179.75908 * 15 14 13 17 17 C 1.40863 * 119.82670 * 0.51627 * 16 15 14 18 18 C 1.41155 * 120.16516 * 179.71454 * 17 16 15 19 19 H 1.07998 * 120.00014 * 214.80219 * 18 17 16 20 20 C 1.39907 * 119.99853 * 34.80704 * 18 17 16 21 21 N 1.30875 * 119.99721 * 355.55635 * 20 18 17 22 22 Si 1.86799 * 120.00109 * 175.56037 * 20 18 17 23 23 H 1.48499 * 109.47329 * 89.99620 * 22 20 18 24 24 H 1.48504 * 109.46801 * 210.00096 * 22 20 18 25 25 H 1.48501 * 109.47025 * 329.99703 * 22 20 18 26 26 C 1.40875 * 119.67376 * 359.74001 * 17 16 15 27 27 C 1.36377 * 119.82560 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47042 * 270.02109 * 1 2 3 29 29 H 1.08999 * 109.46953 * 30.01818 * 1 2 3 30 30 H 1.09002 * 109.46839 * 150.01721 * 1 2 3 31 31 H 1.08001 * 119.97545 * 359.95979 * 3 2 1 32 32 H 1.07994 * 119.97679 * 180.27807 * 6 4 3 33 33 H 1.07996 * 120.01795 * 179.71973 * 7 6 4 34 34 H 1.08994 * 109.47431 * 299.99694 * 10 9 8 35 35 H 1.09003 * 109.47234 * 60.00165 * 10 9 8 36 36 H 0.96992 * 120.00032 * 355.70874 * 13 11 10 37 37 H 1.08004 * 119.92046 * 0.02562 * 15 14 13 38 38 H 1.08000 * 120.08759 * 180.25501 * 16 15 14 39 39 H 0.97005 * 119.99591 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.08731 * 179.97438 * 26 17 16 41 41 H 1.07995 * 119.91061 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5817 1.1969 0.0005 5 17 4.4480 2.7012 0.0012 6 6 4.2759 -0.0004 0.0067 7 6 3.5884 -1.1983 0.0009 8 6 2.2010 -1.2009 0.0005 9 8 1.5227 -2.3788 0.0005 10 6 2.3024 -3.5763 0.0017 11 6 1.3857 -4.7725 0.0021 12 8 0.1832 -4.6150 0.0011 13 7 1.9022 -6.0174 0.0037 14 6 1.0583 -7.1211 0.0944 15 6 1.4706 -8.2540 0.7959 16 6 0.6475 -9.3371 0.8932 17 6 -0.6174 -9.3138 0.2737 18 6 -1.4725 -10.4331 0.3648 19 1 -2.1122 -10.6929 -0.4657 20 6 -1.4914 -11.2059 1.5309 21 7 -0.6552 -10.9441 2.5030 22 14 -2.7101 -12.6114 1.7003 23 1 -2.1002 -13.8610 1.1789 24 1 -3.0616 -12.7919 3.1318 25 1 -3.9373 -12.2987 0.9248 26 6 -1.0245 -8.1680 -0.4376 27 6 -0.1925 -7.0908 -0.5221 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6583 2.1316 -0.0007 32 1 5.3558 0.0021 0.0116 33 1 4.1305 -2.1324 0.0011 34 1 2.9319 -3.6009 -0.8878 35 1 2.9305 -3.6001 0.8922 36 1 2.8618 -6.1444 -0.0583 37 1 2.4423 -8.2719 1.2669 38 1 0.9664 -10.2120 1.4402 39 1 -0.6680 -11.4802 3.3113 40 1 -1.9927 -8.1431 -0.9155 41 1 -0.5030 -6.2119 -1.0674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000037222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -33.789255 kcal Electronic energy + Delta-G solvation = -25621.557468 eV Core-core repulsion = 21685.307179 eV Total energy + Delta-G solvation = -3936.250289 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.76885 -39.65372 -38.01689 -37.15555 -36.47882 -34.52525 -33.19210 -32.99832 -30.50680 -29.73046 -29.42433 -28.10639 -27.06621 -24.89958 -22.92130 -21.97014 -21.65329 -20.85753 -19.78274 -18.47005 -17.52492 -17.28781 -16.54403 -16.52613 -16.22101 -16.02826 -15.20740 -14.78920 -14.63627 -14.25200 -13.98196 -13.74250 -13.56193 -13.07790 -13.03157 -12.95275 -12.85731 -12.67522 -12.20168 -11.98768 -11.90653 -11.74115 -11.58602 -11.42518 -11.19778 -11.09069 -11.04993 -10.92458 -10.76600 -10.08084 -9.55733 -9.51785 -9.28560 -9.20155 -8.95935 -8.37464 -7.60825 -6.94320 -6.66682 -4.39458 0.84362 0.87739 1.84346 2.40500 2.53770 2.93097 3.03718 3.07481 3.11218 3.22364 3.26477 3.77477 3.94793 4.31222 4.38764 4.60915 4.64956 4.76665 4.84332 4.87957 4.91682 5.11344 5.24295 5.44974 5.54578 5.59703 5.70606 5.82812 5.88695 6.11045 6.12448 6.25772 6.37741 6.64795 6.81670 6.99344 7.01929 7.13044 7.23997 7.57947 7.65271 7.79077 8.00619 8.14888 8.25835 8.53490 8.62418 8.87816 8.93526 10.24309 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.034634 B = 0.001679 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.264969 B =16674.141116 C =17089.486742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.100 4.100 3 C -0.074 4.074 4 C -0.071 4.071 5 Cl -0.076 7.076 6 C -0.075 4.075 7 C -0.197 4.197 8 C 0.138 3.862 9 O -0.279 6.279 10 C 0.041 3.959 11 C 0.499 3.501 12 O -0.506 6.506 13 N -0.645 5.645 14 C 0.000 4.000 15 C -0.118 4.118 16 C -0.142 4.142 17 C 0.101 3.899 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.069 3.931 21 N -0.810 5.810 22 Si 0.916 3.084 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.263 1.263 26 C -0.205 4.205 27 C -0.084 4.084 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.397 0.603 37 H 0.092 0.908 38 H 0.133 0.867 39 H 0.278 0.722 40 H 0.097 0.903 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.162 19.251 -3.289 22.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.098 4.098 5 Cl -0.047 7.047 6 C -0.094 4.094 7 C -0.216 4.216 8 C 0.091 3.909 9 O -0.190 6.190 10 C -0.038 4.038 11 C 0.284 3.716 12 O -0.381 6.381 13 N -0.290 5.290 14 C -0.092 4.092 15 C -0.138 4.138 16 C -0.162 4.162 17 C 0.098 3.902 18 C -0.490 4.490 19 H 0.095 0.905 20 C -0.146 4.146 21 N -0.438 5.438 22 Si 0.741 3.259 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.187 1.187 26 C -0.225 4.225 27 C -0.104 4.104 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.156 0.844 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.230 0.770 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.115 0.885 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 10.201 19.394 -3.037 22.123 hybrid contribution 0.465 -0.569 0.302 0.795 sum 10.666 18.825 -2.735 21.809 Atomic orbital electron populations 1.20680 0.89414 1.03468 1.03011 1.19237 0.97172 0.89416 1.04237 1.20771 0.91780 0.97926 0.98792 1.20735 0.92358 0.87106 1.09589 1.98361 1.76799 1.32296 1.97224 1.20795 1.00337 0.90066 0.98183 1.21225 0.92828 0.99206 1.08300 1.18976 0.90365 0.85979 0.95576 1.86203 1.33964 1.11122 1.87756 1.22570 0.94061 0.83541 1.03620 1.19882 0.89153 0.83718 0.78878 1.90744 1.14822 1.85237 1.47252 1.42768 1.09760 1.04215 1.72265 1.17207 0.94414 0.88076 1.09518 1.20305 0.99352 0.94348 0.99813 1.21198 0.93352 0.98270 1.03356 1.17750 0.91155 0.91622 0.89649 1.19519 1.20161 1.08872 1.00461 0.90527 1.25895 0.95875 0.97464 0.95363 1.69758 1.32136 1.36224 1.05640 0.86181 0.80955 0.80597 0.78172 1.19491 1.20269 1.18684 1.20814 0.99231 0.93929 1.08542 1.20405 0.93455 0.97913 0.98629 0.90809 0.91439 0.90159 0.84286 0.84683 0.84351 0.89105 0.88965 0.76964 0.88993 0.84954 0.91077 0.88488 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 9.79 36.01 0.35 -0.72 16 2 C -0.10 -1.04 5.89 -104.48 -0.62 -1.66 16 3 C -0.07 -0.67 9.48 -39.57 -0.38 -1.05 16 4 C -0.07 -0.64 6.32 -39.49 -0.25 -0.89 16 5 Cl -0.08 -0.63 28.95 -51.86 -1.50 -2.13 16 6 C -0.08 -0.63 9.82 -39.57 -0.39 -1.02 16 7 C -0.20 -1.75 9.04 -39.44 -0.36 -2.11 16 8 C 0.14 1.54 6.66 -39.22 -0.26 1.28 16 9 O -0.28 -3.71 8.71 -39.40 -0.34 -4.06 16 10 C 0.04 0.46 5.22 36.01 0.19 0.64 16 11 C 0.50 8.18 7.74 -10.98 -0.08 8.09 16 12 O -0.51 -10.80 13.92 -14.35 -0.20 -11.00 16 13 N -0.65 -10.41 5.30 -9.74 -0.05 -10.46 16 14 C 0.00 -0.01 6.30 -83.57 -0.53 -0.53 16 15 C -0.12 -2.59 9.90 -39.79 -0.39 -2.98 16 16 C -0.14 -3.55 8.62 -39.26 -0.34 -3.89 16 17 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 18 C -0.46 -12.08 9.02 -37.85 -0.34 -12.42 16 19 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 20 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 21 N -0.81 -20.76 10.60 55.55 0.59 -20.17 16 22 Si 0.92 18.75 29.56 -169.99 -5.03 13.72 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 24 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 26 C -0.21 -5.11 9.74 -39.26 -0.38 -5.50 16 27 C -0.08 -1.97 8.61 -39.79 -0.34 -2.31 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 31 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 33 H 0.14 0.90 6.30 -52.49 -0.33 0.57 16 34 H 0.09 0.73 7.66 -51.93 -0.40 0.33 16 35 H 0.09 0.78 7.66 -51.93 -0.40 0.38 16 36 H 0.40 4.63 8.82 -40.82 -0.36 4.27 16 37 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.13 3.43 6.13 -52.49 -0.32 3.10 16 39 H 0.28 6.52 8.30 -40.82 -0.34 6.19 16 40 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.11 2.49 6.22 -52.49 -0.33 2.17 16 LS Contribution 366.42 15.07 5.52 5.52 Total: -1.00 -31.00 366.42 -10.42 -41.42 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -4.61 Total: 8.53 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -4.80 Total: -21.38 kcal Atomic # 7 Polarization: -31.16 SS G_CDS: 0.54 Total: -30.63 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.54 Total: -15.05 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.50 Total: -2.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.00 -10.42 -41.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.629 kcal (2) G-P(sol) polarization free energy of solvation -30.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds