Wall clock time and date at job start Tue Mar 31 2020 06:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38167 * 120.02169 * 2 1 4 4 C 1.38340 * 120.04634 * 179.97438 * 3 2 1 5 5 Cl 1.73591 * 119.96179 * 180.02562 * 4 3 2 6 6 C 1.38395 * 120.08045 * 359.73072 * 4 3 2 7 7 C 1.38124 * 120.04193 * 0.54947 * 6 4 3 8 8 C 1.38699 * 120.01949 * 179.97438 * 2 1 3 9 9 O 1.35919 * 120.04330 * 0.02562 * 8 2 1 10 10 C 1.42902 * 116.99512 * 180.02562 * 9 8 2 11 11 C 1.50704 * 109.46672 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00170 * 0.02562 * 11 10 9 13 13 N 1.34783 * 119.99791 * 180.02562 * 11 10 9 14 14 C 1.39234 * 119.99638 * 175.70977 * 13 11 10 15 15 C 1.39478 * 119.83009 * 215.00940 * 14 13 11 16 16 C 1.36384 * 120.16849 * 179.75908 * 15 14 13 17 17 C 1.40863 * 119.82670 * 0.51627 * 16 15 14 18 18 C 1.41155 * 120.16516 * 179.71454 * 17 16 15 19 19 H 1.07998 * 120.00014 * 214.80219 * 18 17 16 20 20 C 1.39907 * 119.99853 * 34.80704 * 18 17 16 21 21 N 1.30875 * 119.99721 * 355.55635 * 20 18 17 22 22 Si 1.86799 * 120.00109 * 175.56037 * 20 18 17 23 23 H 1.48499 * 109.47329 * 89.99620 * 22 20 18 24 24 H 1.48504 * 109.46801 * 210.00096 * 22 20 18 25 25 H 1.48501 * 109.47025 * 329.99703 * 22 20 18 26 26 C 1.40875 * 119.67376 * 359.74001 * 17 16 15 27 27 C 1.36377 * 119.82560 * 0.02562 * 26 17 16 28 28 H 1.09000 * 109.47042 * 270.02109 * 1 2 3 29 29 H 1.08999 * 109.46953 * 30.01818 * 1 2 3 30 30 H 1.09002 * 109.46839 * 150.01721 * 1 2 3 31 31 H 1.08001 * 119.97545 * 359.95979 * 3 2 1 32 32 H 1.07994 * 119.97679 * 180.27807 * 6 4 3 33 33 H 1.07996 * 120.01795 * 179.71973 * 7 6 4 34 34 H 1.08994 * 109.47431 * 299.99694 * 10 9 8 35 35 H 1.09003 * 109.47234 * 60.00165 * 10 9 8 36 36 H 0.96992 * 120.00032 * 355.70874 * 13 11 10 37 37 H 1.08004 * 119.92046 * 0.02562 * 15 14 13 38 38 H 1.08000 * 120.08759 * 180.25501 * 16 15 14 39 39 H 0.97005 * 119.99591 * 180.02562 * 21 20 18 40 40 H 1.07996 * 120.08731 * 179.97438 * 26 17 16 41 41 H 1.07995 * 119.91061 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1963 0.0000 4 6 3.5817 1.1969 0.0005 5 17 4.4480 2.7012 0.0012 6 6 4.2759 -0.0004 0.0067 7 6 3.5884 -1.1983 0.0009 8 6 2.2010 -1.2009 0.0005 9 8 1.5227 -2.3788 0.0005 10 6 2.3024 -3.5763 0.0017 11 6 1.3857 -4.7725 0.0021 12 8 0.1832 -4.6150 0.0011 13 7 1.9022 -6.0174 0.0037 14 6 1.0583 -7.1211 0.0944 15 6 1.4706 -8.2540 0.7959 16 6 0.6475 -9.3371 0.8932 17 6 -0.6174 -9.3138 0.2737 18 6 -1.4725 -10.4331 0.3648 19 1 -2.1122 -10.6929 -0.4657 20 6 -1.4914 -11.2059 1.5309 21 7 -0.6552 -10.9441 2.5030 22 14 -2.7101 -12.6114 1.7003 23 1 -2.1002 -13.8610 1.1789 24 1 -3.0616 -12.7919 3.1318 25 1 -3.9373 -12.2987 0.9248 26 6 -1.0245 -8.1680 -0.4376 27 6 -0.1925 -7.0908 -0.5221 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3633 -0.8902 -0.5136 31 1 1.6583 2.1316 -0.0007 32 1 5.3558 0.0021 0.0116 33 1 4.1305 -2.1324 0.0011 34 1 2.9319 -3.6009 -0.8878 35 1 2.9305 -3.6001 0.8922 36 1 2.8618 -6.1444 -0.0583 37 1 2.4423 -8.2719 1.2669 38 1 0.9664 -10.2120 1.4402 39 1 -0.6680 -11.4802 3.3113 40 1 -1.9927 -8.1431 -0.9155 41 1 -0.5030 -6.2119 -1.0674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000037222.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:50 Heat of formation + Delta-G solvation = -49.805883 kcal Electronic energy + Delta-G solvation = -25622.252001 eV Core-core repulsion = 21685.307179 eV Total energy + Delta-G solvation = -3936.944822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69492 -40.92828 -39.22436 -38.47821 -37.19539 -36.18088 -34.76849 -33.85785 -31.61211 -31.39070 -30.82148 -29.37009 -27.81478 -26.60343 -23.93496 -23.23928 -22.69503 -22.52144 -21.24506 -19.33567 -19.22550 -18.67660 -17.72743 -17.45065 -17.18184 -17.03992 -16.93737 -15.93845 -15.64393 -15.50065 -15.37592 -14.95393 -14.53671 -14.45741 -14.21405 -14.01260 -13.89618 -13.71423 -13.61309 -13.54040 -13.24932 -12.92466 -12.81287 -12.71588 -12.60993 -12.49285 -12.26293 -11.82163 -11.71456 -11.65981 -11.40625 -11.22728 -10.83686 -10.61963 -9.95124 -9.47780 -9.11143 -8.76009 -8.51710 -6.34442 0.16407 0.18417 0.75522 1.12669 1.17754 1.39542 1.42432 1.52169 1.53355 1.73998 2.23726 2.53749 2.68682 2.80204 3.53900 3.66393 3.71755 3.79664 3.98946 4.10887 4.11646 4.21921 4.39246 4.43563 4.51342 4.53342 4.76288 4.81924 4.92420 5.01129 5.11723 5.13204 5.17566 5.20155 5.31297 5.33807 5.41239 5.56690 5.68528 5.88320 5.99640 6.11496 6.24642 6.38179 6.64610 6.68080 6.95774 6.98302 7.31368 8.40939 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.034634 B = 0.001679 C = 0.001638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.264969 B =16674.141116 C =17089.486742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.117 4.117 3 C -0.076 4.076 4 C -0.078 4.078 5 Cl -0.071 7.071 6 C -0.075 4.075 7 C -0.191 4.191 8 C 0.117 3.883 9 O -0.311 6.311 10 C 0.049 3.951 11 C 0.497 3.503 12 O -0.562 6.562 13 N -0.635 5.635 14 C 0.020 3.980 15 C -0.114 4.114 16 C -0.159 4.159 17 C 0.067 3.933 18 C -0.498 4.498 19 H 0.072 0.928 20 C 0.028 3.972 21 N -0.840 5.840 22 Si 0.987 3.013 23 H -0.259 1.259 24 H -0.269 1.269 25 H -0.264 1.264 26 C -0.222 4.222 27 C -0.098 4.098 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.153 0.847 32 H 0.158 0.842 33 H 0.167 0.833 34 H 0.132 0.868 35 H 0.129 0.871 36 H 0.423 0.577 37 H 0.130 0.870 38 H 0.120 0.880 39 H 0.285 0.715 40 H 0.094 0.906 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.733 20.393 -3.006 24.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.118 4.118 3 C -0.094 4.094 4 C -0.105 4.105 5 Cl -0.042 7.042 6 C -0.094 4.094 7 C -0.209 4.209 8 C 0.071 3.929 9 O -0.224 6.224 10 C -0.028 4.028 11 C 0.285 3.715 12 O -0.440 6.440 13 N -0.282 5.282 14 C -0.073 4.073 15 C -0.134 4.134 16 C -0.179 4.179 17 C 0.065 3.935 18 C -0.529 4.529 19 H 0.090 0.910 20 C -0.184 4.184 21 N -0.468 5.468 22 Si 0.808 3.192 23 H -0.183 1.183 24 H -0.194 1.194 25 H -0.188 1.188 26 C -0.242 4.242 27 C -0.118 4.118 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.171 0.829 32 H 0.176 0.824 33 H 0.185 0.815 34 H 0.149 0.851 35 H 0.146 0.854 36 H 0.262 0.738 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.096 0.904 40 H 0.112 0.888 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 12.841 20.564 -2.766 24.401 hybrid contribution -0.215 -0.692 0.173 0.745 sum 12.625 19.872 -2.593 23.686 Atomic orbital electron populations 1.20633 0.89753 1.03145 1.02774 1.19398 0.97298 0.90053 1.05098 1.20910 0.92119 0.98008 0.98395 1.20921 0.92483 0.87718 1.09348 1.98365 1.76591 1.32081 1.97184 1.21105 1.01525 0.89579 0.97147 1.21506 0.91813 1.00611 1.06999 1.19184 0.91432 0.85226 0.97066 1.86150 1.35550 1.12163 1.88524 1.22617 0.92445 0.80589 1.07178 1.20871 0.89207 0.84864 0.76604 1.90732 1.17737 1.86105 1.49424 1.42634 1.10594 1.03045 1.71924 1.17247 0.93968 0.89278 1.06838 1.20581 1.00397 0.93345 0.99122 1.21193 0.93612 0.99169 1.03964 1.18061 0.92194 0.92312 0.90975 1.19731 1.21348 1.10329 1.01450 0.91011 1.26722 0.97501 0.99672 0.94481 1.69816 1.33418 1.37370 1.06153 0.85116 0.78287 0.77418 0.78330 1.18311 1.19394 1.18817 1.20922 0.99719 0.94473 1.09076 1.20526 0.94625 0.97283 0.99381 0.91055 0.89572 0.92603 0.82939 0.82424 0.81517 0.85093 0.85385 0.73831 0.85183 0.86204 0.90425 0.88816 0.87598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.10 9.79 71.24 0.70 -1.41 16 2 C -0.12 -2.34 5.89 -19.77 -0.12 -2.46 16 3 C -0.08 -1.25 9.48 22.28 0.21 -1.04 16 4 C -0.08 -1.22 6.32 22.33 0.14 -1.08 16 5 Cl -0.07 -1.03 28.95 -2.72 -0.08 -1.11 16 6 C -0.08 -1.01 9.82 22.28 0.22 -0.79 16 7 C -0.19 -2.70 9.04 22.36 0.20 -2.50 16 8 C 0.12 2.37 6.66 22.50 0.15 2.52 16 9 O -0.31 -7.79 8.71 -73.60 -0.64 -8.43 16 10 C 0.05 0.92 5.22 71.24 0.37 1.30 16 11 C 0.50 15.33 7.74 87.66 0.68 16.01 16 12 O -0.56 -24.07 13.92 16.01 0.22 -23.85 16 13 N -0.63 -18.79 5.30 -303.11 -1.61 -20.40 16 14 C 0.02 0.84 6.30 38.56 0.24 1.08 16 15 C -0.11 -4.89 9.90 22.14 0.22 -4.67 16 16 C -0.16 -8.14 8.62 22.48 0.19 -7.94 16 17 C 0.07 3.67 5.55 -21.28 -0.12 3.56 16 18 C -0.50 -27.33 9.02 23.39 0.21 -27.12 16 19 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 20 C 0.03 1.44 5.42 85.24 0.46 1.90 16 21 N -0.84 -43.92 10.60 21.82 0.23 -43.69 16 22 Si 0.99 39.00 29.56 68.60 2.03 41.02 16 23 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 24 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 C -0.22 -11.56 9.74 22.48 0.22 -11.34 16 27 C -0.10 -4.69 8.61 22.13 0.19 -4.50 16 28 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.09 1.29 8.09 -2.39 -0.02 1.27 16 30 H 0.05 1.36 7.53 -2.39 -0.02 1.35 16 31 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.17 1.28 6.30 -2.91 -0.02 1.26 16 34 H 0.13 1.43 7.66 -2.39 -0.02 1.42 16 35 H 0.13 1.52 7.66 -2.39 -0.02 1.50 16 36 H 0.42 8.09 8.82 -92.71 -0.82 7.27 16 37 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 38 H 0.12 6.37 6.13 -2.91 -0.02 6.35 16 39 H 0.29 13.52 8.30 -92.70 -0.77 12.75 16 40 H 0.09 4.74 8.06 -2.91 -0.02 4.72 16 41 H 0.11 5.06 6.22 -2.91 -0.02 5.04 16 Total: -1.00 -71.78 366.42 4.60 -67.18 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.27 Total: 27.77 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 4.17 Total: -38.49 kcal Atomic # 7 Polarization: -62.71 SS G_CDS: -1.38 Total: -64.09 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.42 Total: -32.28 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.02 kcal Atomic # 17 Polarization: -1.03 SS G_CDS: -0.08 Total: -1.11 kcal Total: -71.78 4.60 -67.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037222.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.372 kcal (2) G-P(sol) polarization free energy of solvation -71.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds