Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86799 * 120.00033 * 2 1 4 4 H 1.48509 * 109.47227 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47193 * 299.99574 * 3 2 1 6 6 H 1.48497 * 109.47403 * 59.99899 * 3 2 1 7 7 C 1.39914 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99494 * 175.40104 * 7 2 1 9 9 C 1.41127 * 120.00182 * 355.39948 * 7 2 1 10 10 C 1.40882 * 120.16158 * 214.84856 * 9 7 2 11 11 C 1.36367 * 119.82992 * 180.02562 * 10 9 7 12 12 C 1.39511 * 120.16456 * 359.97438 * 11 10 9 13 13 N 1.39126 * 119.83719 * 180.02562 * 12 11 10 14 14 C 1.34787 * 119.99613 * 35.22595 * 13 12 11 15 15 O 1.21562 * 119.99766 * 355.36641 * 14 13 12 16 16 C 1.47795 * 119.99618 * 175.64097 * 14 13 12 17 17 C 1.39621 * 120.14618 * 359.72452 * 16 14 13 18 18 C 1.37929 * 119.87118 * 179.71744 * 17 16 14 19 19 C 1.38371 * 120.15873 * 0.53676 * 18 17 16 20 20 C 1.38423 * 120.28729 * 359.76501 * 19 18 17 21 21 Br 1.89105 * 119.93536 * 179.97438 * 20 19 18 22 22 C 1.38061 * 120.12915 * 359.95038 * 20 19 18 23 23 C 1.39515 * 120.33221 * 0.27240 * 12 11 10 24 24 C 1.36367 * 120.16122 * 359.44851 * 23 12 11 25 25 H 0.96999 * 119.99903 * 0.02562 * 1 2 3 26 26 H 1.07990 * 120.08641 * 359.97438 * 10 9 7 27 27 H 1.07993 * 119.91852 * 179.97438 * 11 10 9 28 28 H 0.96998 * 120.00567 * 215.22931 * 13 12 11 29 29 H 1.07997 * 120.06381 * 359.97438 * 17 16 14 30 30 H 1.08003 * 119.92568 * 180.27469 * 18 17 16 31 31 H 1.08006 * 119.85454 * 179.73824 * 19 18 17 32 32 H 1.07998 * 120.08766 * 180.02562 * 22 20 19 33 33 H 1.07995 * 119.92095 * 179.70601 * 23 12 11 34 34 H 1.07996 * 120.08220 * 180.27664 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7028 1.3464 0.0006 5 1 1.8840 2.3964 -1.2126 6 1 1.8840 2.3965 1.2124 7 6 2.0083 -1.2117 0.0005 8 1 3.0856 -1.2132 -0.0745 9 6 1.3060 -2.4319 0.0991 10 6 1.8665 -3.5163 0.8025 11 6 1.1823 -4.6924 0.8930 12 6 -0.0698 -4.8231 0.2918 13 7 -0.7622 -6.0260 0.3889 14 6 -0.6773 -6.7634 1.5140 15 8 0.0691 -6.4209 2.4103 16 6 -1.4873 -7.9915 1.6554 17 6 -2.3456 -8.3875 0.6278 18 6 -3.0946 -9.5378 0.7633 19 6 -3.0053 -10.2933 1.9191 20 6 -2.1612 -9.9035 2.9445 21 35 -2.0476 -10.9431 4.5201 22 6 -1.4018 -8.7573 2.8191 23 6 -0.6290 -3.7553 -0.4107 24 6 0.0410 -2.5713 -0.5049 25 1 -0.4850 0.8400 -0.0004 26 1 2.8358 -3.4167 1.2680 27 1 1.6108 -5.5248 1.4315 28 1 -1.3058 -6.3340 -0.3529 29 1 -2.4198 -7.7965 -0.2731 30 1 -3.7554 -9.8473 -0.0329 31 1 -3.5972 -11.1909 2.0217 32 1 -0.7431 -8.4540 3.6194 33 1 -1.5966 -3.8653 -0.8776 34 1 -0.3951 -1.7441 -1.0453 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000037326.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = 0.046567 kcal Electronic energy + Delta-G solvation = -20151.000998 eV Core-core repulsion = 16865.957160 eV Total energy + Delta-G solvation = -3285.043838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 345.011 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62043 -39.93667 -38.82894 -36.26983 -34.86997 -33.47442 -32.38900 -31.50826 -30.84133 -30.11827 -27.09964 -25.04571 -23.45025 -23.31545 -22.53628 -21.19592 -19.38660 -19.14708 -17.99679 -17.26389 -17.05760 -16.30396 -16.27637 -15.89771 -15.68211 -15.03452 -14.91459 -14.61606 -14.41618 -14.19553 -13.99440 -13.61653 -13.25205 -12.93051 -12.86520 -12.75911 -12.48593 -12.29279 -11.93564 -11.80141 -11.41423 -11.36855 -11.25799 -10.91328 -10.67093 -10.15854 -9.85222 -9.48885 -8.75940 -8.52056 -6.34609 -0.37102 0.05468 0.51598 0.81630 1.12562 1.39728 1.45280 1.54698 1.79607 2.18064 2.24408 2.64949 2.80897 3.54232 3.67778 3.75571 3.94735 4.04848 4.24160 4.36537 4.44954 4.52590 4.76636 4.90388 5.02933 5.08991 5.12576 5.15080 5.20621 5.31580 5.40281 5.63556 5.68355 5.88049 5.99412 6.11771 6.36948 6.61361 6.66842 6.95284 6.97198 7.26269 8.40786 Molecular weight = 345.01amu Principal moments of inertia in cm(-1) A = 0.031282 B = 0.002091 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.878504 B =13388.798381 C =13918.730478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.261 1.261 5 H -0.261 1.261 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.072 0.928 9 C 0.069 3.931 10 C -0.222 4.222 11 C -0.096 4.096 12 C 0.016 3.984 13 N -0.633 5.633 14 C 0.540 3.460 15 O -0.572 6.572 16 C -0.138 4.138 17 C -0.066 4.066 18 C -0.106 4.106 19 C -0.061 4.061 20 C -0.109 4.109 21 Br -0.044 7.044 22 C -0.052 4.052 23 C -0.114 4.114 24 C -0.159 4.159 25 H 0.285 0.715 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.418 0.582 29 H 0.160 0.840 30 H 0.182 0.818 31 H 0.166 0.834 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.184 -21.698 0.865 24.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.185 1.185 5 H -0.186 1.186 6 H -0.195 1.195 7 C -0.526 4.526 8 H 0.090 0.910 9 C 0.067 3.933 10 C -0.242 4.242 11 C -0.116 4.116 12 C -0.077 4.077 13 N -0.277 5.277 14 C 0.330 3.670 15 O -0.452 6.452 16 C -0.142 4.142 17 C -0.085 4.085 18 C -0.124 4.124 19 C -0.081 4.081 20 C -0.188 4.188 21 Br 0.041 6.959 22 C -0.073 4.073 23 C -0.134 4.134 24 C -0.179 4.179 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.124 0.876 28 H 0.257 0.743 29 H 0.177 0.823 30 H 0.199 0.801 31 H 0.183 0.817 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.841 -21.708 2.078 24.353 hybrid contribution 0.474 1.118 -0.169 1.227 sum -10.366 -20.589 1.909 23.130 Atomic orbital electron populations 1.69819 1.08536 1.29972 1.38365 1.26741 0.95836 1.04296 0.91561 0.85055 0.79036 0.76112 0.78828 1.18480 1.18592 1.19485 1.19752 0.94870 0.91336 1.46679 0.90959 1.18055 0.93414 0.92629 0.89248 1.20927 1.01639 0.95537 1.06068 1.20528 0.93800 0.97428 0.99888 1.17291 0.93498 0.87225 1.09725 1.42713 1.48172 1.19876 1.16980 1.18807 0.82358 0.84200 0.81662 1.90752 1.40616 1.71870 1.41996 1.19784 1.01334 0.95661 0.97419 1.21829 0.92445 0.96793 0.97460 1.21592 0.99211 0.93315 0.98276 1.21752 0.94882 1.00160 0.91288 1.21818 1.03691 0.97622 0.95684 1.96741 1.98188 1.68665 1.32264 1.21149 0.96716 0.92475 0.96953 1.20573 0.99364 0.91925 1.01538 1.21201 0.97412 0.96518 1.02816 0.90404 0.88653 0.87599 0.74297 0.82294 0.80107 0.81689 0.85845 0.85311 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.06 10.59 21.82 0.23 -43.83 16 2 C 0.03 1.42 5.42 85.24 0.46 1.88 16 3 Si 0.99 39.15 29.56 68.60 2.03 41.18 16 4 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 7 C -0.50 -27.31 9.02 23.39 0.21 -27.10 16 8 H 0.07 3.87 7.85 -2.91 -0.02 3.85 16 9 C 0.07 3.81 5.55 -21.28 -0.12 3.69 16 10 C -0.22 -11.69 9.74 22.48 0.22 -11.47 16 11 C -0.10 -4.72 8.61 22.14 0.19 -4.53 16 12 C 0.02 0.70 6.31 38.60 0.24 0.94 16 13 N -0.63 -20.93 5.25 -305.73 -1.60 -22.53 16 14 C 0.54 18.88 7.61 86.77 0.66 19.54 16 15 O -0.57 -25.54 13.75 -3.91 -0.05 -25.59 16 16 C -0.14 -3.51 5.87 -20.09 -0.12 -3.63 16 17 C -0.07 -1.06 9.54 22.53 0.21 -0.85 16 18 C -0.11 -1.14 10.03 22.23 0.22 -0.92 16 19 C -0.06 -0.80 9.78 22.35 0.22 -0.58 16 20 C -0.11 -2.13 6.22 22.27 0.14 -1.99 16 21 Br -0.04 -0.81 33.69 -20.37 -0.69 -1.50 16 22 C -0.05 -1.33 9.33 22.55 0.21 -1.12 16 23 C -0.11 -5.02 9.90 22.14 0.22 -4.80 16 24 C -0.16 -8.25 8.62 22.48 0.19 -8.06 16 25 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 26 H 0.10 4.86 8.06 -2.92 -0.02 4.83 16 27 H 0.11 5.19 6.20 -2.91 -0.02 5.17 16 28 H 0.42 9.72 6.86 -92.71 -0.64 9.08 16 29 H 0.16 1.67 6.42 -2.91 -0.02 1.65 16 30 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 31 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 32 H 0.12 3.63 7.65 -2.91 -0.02 3.61 16 33 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 34 H 0.12 6.50 6.13 -2.91 -0.02 6.48 16 Total: -1.00 -69.32 317.34 3.60 -65.71 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.52 Total: 25.54 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 3.17 Total: -38.98 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -1.37 Total: -66.36 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 35 Polarization: -0.81 SS G_CDS: -0.69 Total: -1.50 kcal Total: -69.32 3.60 -65.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000037326.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.758 kcal (2) G-P(sol) polarization free energy of solvation -69.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds