Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86801 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47043 * 239.99434 * 3 2 1 5 5 H 1.48500 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46904 * 119.99770 * 3 2 1 7 7 C 1.40032 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 198.00420 * 7 2 1 9 9 C 1.40775 * 120.00140 * 18.00414 * 7 2 1 10 10 C 1.41080 * 120.07868 * 205.07915 * 9 7 2 11 11 C 1.36014 * 119.92004 * 180.25453 * 10 9 7 12 12 C 1.40430 * 120.08119 * 359.50084 * 11 10 9 13 13 N 1.35971 * 119.92876 * 180.25618 * 12 11 10 14 14 C 1.30811 * 120.00490 * 134.99510 * 13 12 11 15 15 C 1.46760 * 120.00053 * 179.97438 * 14 13 12 16 16 C 1.40041 * 120.21585 * 179.72645 * 15 14 13 17 17 C 1.37797 * 119.85938 * 179.79444 * 16 15 14 18 18 Br 1.89092 * 119.84392 * 180.25437 * 17 16 15 19 19 C 1.38685 * 120.31014 * 0.46024 * 17 16 15 20 20 C 1.38144 * 120.44921 * 359.79267 * 19 17 16 21 21 C 1.38581 * 120.12682 * 359.97438 * 20 19 17 22 22 O 1.35693 * 120.15477 * 180.02562 * 21 20 19 23 23 C 1.40438 * 120.15378 * 0.22930 * 12 11 10 24 24 C 1.36023 * 120.07909 * 0.02665 * 23 12 11 25 25 H 0.97002 * 120.00249 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.04207 * 0.02949 * 10 9 7 27 27 H 1.08004 * 119.96338 * 179.77889 * 11 10 9 28 28 H 1.07997 * 119.99771 * 0.02562 * 14 13 12 29 29 H 1.07993 * 120.06897 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.77752 * 179.76652 * 19 17 16 31 31 H 1.08000 * 119.93154 * 179.97438 * 20 19 17 32 32 H 0.96693 * 113.99717 * 269.97549 * 22 21 20 33 33 H 1.08003 * 119.96449 * 180.02562 * 23 12 11 34 34 H 1.08000 * 120.04009 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0957 1.6963 -1.2124 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6964 1.2126 7 6 2.0080 -1.2127 0.0005 8 1 3.0483 -1.2354 0.2896 9 6 1.3559 -2.4022 -0.3757 10 6 1.8239 -3.6457 0.0986 11 6 1.1945 -4.7933 -0.2712 12 6 0.0737 -4.7408 -1.1156 13 7 -0.5563 -5.8896 -1.4791 14 6 -1.8622 -5.9579 -1.4470 15 6 -2.5421 -7.1977 -1.8399 16 6 -3.9397 -7.2776 -1.8019 17 6 -4.5707 -8.4440 -2.1764 18 35 -6.4582 -8.5490 -2.1317 19 6 -3.8277 -9.5426 -2.5819 20 6 -2.4482 -9.4796 -2.6193 21 6 -1.7949 -8.3142 -2.2512 22 8 -0.4399 -8.2516 -2.2882 23 6 -0.3985 -3.5043 -1.5851 24 6 0.2292 -2.3530 -1.2235 25 1 -0.4850 0.8400 0.0004 26 1 2.6832 -3.6866 0.7516 27 1 1.5544 -5.7460 0.0886 28 1 -2.4401 -5.1015 -1.1322 29 1 -4.5219 -6.4257 -1.4832 30 1 -4.3310 -10.4537 -2.8701 31 1 -1.8779 -10.3403 -2.9361 32 1 -0.0113 -8.5172 -1.4632 33 1 -1.2610 -3.4674 -2.2340 34 1 -0.1347 -1.4024 -1.5846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000067107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = 26.409670 kcal Electronic energy + Delta-G solvation = -20022.154505 eV Core-core repulsion = 16738.253857 eV Total energy + Delta-G solvation = -3283.900648 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 345.011 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.72719 -38.11056 -36.53620 -35.47595 -33.54614 -31.75016 -31.42271 -29.70251 -29.19384 -28.29860 -25.65187 -23.50267 -22.47217 -21.34931 -20.98579 -19.32734 -17.97691 -17.57545 -16.54297 -15.96514 -15.54417 -15.14359 -14.85222 -14.15912 -14.07153 -13.84611 -13.42658 -13.01342 -12.94608 -12.33944 -12.29595 -12.03289 -11.93152 -11.74674 -11.32294 -11.09294 -10.95143 -10.89289 -10.45283 -10.40231 -10.36751 -10.08248 -9.66537 -9.41272 -9.00497 -8.67716 -8.29197 -7.79899 -7.18092 -6.98727 -4.52798 0.75198 1.07265 1.52864 2.15944 2.83516 2.91665 2.94275 2.96408 3.25978 3.70774 3.79274 4.33765 4.43151 4.65702 4.77241 5.05168 5.22903 5.39125 5.49862 5.78298 5.83133 6.00095 6.06005 6.06563 6.14871 6.35881 6.52017 6.65911 6.75369 6.84368 6.93975 7.12706 7.36755 7.50100 7.79797 7.88439 7.91078 7.99186 8.32632 8.57428 8.60468 8.95690 9.84625 Molecular weight = 345.01amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.002233 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.034093 B =12536.679261 C =13706.304309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.072 3.928 3 Si 0.915 3.085 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.437 4.437 8 H 0.085 0.915 9 C 0.117 3.883 10 C -0.226 4.226 11 C -0.044 4.044 12 C -0.089 4.089 13 N -0.391 5.391 14 C 0.074 3.926 15 C -0.052 4.052 16 C -0.067 4.067 17 C -0.102 4.102 18 Br -0.059 7.059 19 C -0.083 4.083 20 C -0.147 4.147 21 C 0.150 3.850 22 O -0.468 6.468 23 C -0.101 4.101 24 C -0.164 4.164 25 H 0.288 0.712 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.137 0.863 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.391 0.609 33 H 0.090 0.910 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.369 -13.996 -2.544 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.464 4.464 8 H 0.103 0.897 9 C 0.113 3.887 10 C -0.246 4.246 11 C -0.063 4.063 12 C -0.193 4.193 13 N -0.096 5.096 14 C -0.124 4.124 15 C -0.054 4.054 16 C -0.089 4.089 17 C -0.181 4.181 18 Br 0.026 6.974 19 C -0.104 4.104 20 C -0.166 4.166 21 C 0.102 3.898 22 O -0.279 6.279 23 C -0.121 4.121 24 C -0.184 4.184 25 H 0.099 0.901 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.115 0.885 29 H 0.155 0.845 30 H 0.149 0.851 31 H 0.153 0.847 32 H 0.249 0.751 33 H 0.108 0.892 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.553 -14.107 -3.253 17.916 hybrid contribution 0.236 1.436 0.582 1.567 sum -10.317 -12.671 -2.671 16.557 Atomic orbital electron populations 1.69793 1.07890 1.30225 1.31591 1.26095 0.94846 1.01959 0.92058 0.86239 0.80188 0.79381 0.80359 1.18459 1.20008 1.18618 1.19720 0.98441 0.91301 1.36987 0.89696 1.17755 0.90897 0.92214 0.87809 1.20654 1.04183 0.92662 1.07086 1.20121 0.92941 0.96962 0.96298 1.18186 1.02076 0.87831 1.11256 1.68347 1.09423 1.26892 1.04934 1.23694 0.91956 0.94154 1.02574 1.19326 0.92106 0.94274 0.99727 1.21116 0.93122 0.96689 0.97945 1.21515 0.89951 0.97572 1.09109 1.96680 1.03809 1.98860 1.98005 1.20939 0.93312 0.97332 0.98815 1.21382 0.94110 0.97983 1.03175 1.18778 0.84379 0.91210 0.95436 1.84764 1.13738 1.89980 1.39378 1.20988 0.98009 0.92794 1.00340 1.20927 0.99704 0.96802 1.00943 0.90127 0.88210 0.88545 0.88534 0.84481 0.85054 0.84706 0.75080 0.89220 0.86262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.62 10.96 55.55 0.61 -18.01 16 2 C 0.07 1.67 5.12 -17.32 -0.09 1.58 16 3 Si 0.91 17.27 29.60 -169.99 -5.03 12.24 16 4 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 16 7 C -0.44 -10.82 9.02 -37.95 -0.34 -11.16 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.12 2.97 5.57 -106.78 -0.60 2.37 16 10 C -0.23 -5.32 9.72 -39.30 -0.38 -5.71 16 11 C -0.04 -0.99 9.93 -39.56 -0.39 -1.38 16 12 C -0.09 -2.03 6.20 -84.38 -0.52 -2.55 16 13 N -0.39 -7.98 8.23 -8.88 -0.07 -8.05 16 14 C 0.07 1.34 9.83 -14.54 -0.14 1.20 16 15 C -0.05 -0.79 5.88 -104.93 -0.62 -1.40 16 16 C -0.07 -0.87 9.52 -39.07 -0.37 -1.24 16 17 C -0.10 -1.20 6.22 -39.58 -0.25 -1.45 16 18 Br -0.06 -0.61 33.69 -68.01 -2.29 -2.90 16 19 C -0.08 -0.89 9.77 -39.45 -0.39 -1.28 16 20 C -0.15 -1.68 9.97 -39.49 -0.39 -2.07 16 21 C 0.15 2.12 6.73 -38.60 -0.26 1.86 16 22 O -0.47 -6.95 11.37 -18.78 -0.21 -7.16 16 23 C -0.10 -2.39 9.10 -39.55 -0.36 -2.75 16 24 C -0.16 -4.13 8.62 -39.30 -0.34 -4.47 16 25 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 26 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 27 H 0.10 1.93 8.06 -52.48 -0.42 1.51 16 28 H 0.10 1.73 7.50 -52.49 -0.39 1.34 16 29 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 30 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 32 H 0.39 4.49 9.06 45.56 0.41 4.90 16 33 H 0.09 1.98 7.65 -52.48 -0.40 1.58 16 34 H 0.12 3.06 6.16 -52.49 -0.32 2.74 16 LS Contribution 323.23 15.07 4.87 4.87 Total: -1.00 -27.15 323.23 -9.94 -37.09 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -2.37 Total: 10.37 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -5.44 Total: -28.45 kcal Atomic # 7 Polarization: -26.60 SS G_CDS: 0.54 Total: -26.06 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: -0.21 Total: -7.16 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.24 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -27.15 -9.94 -37.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000067107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.499 kcal (2) G-P(sol) polarization free energy of solvation -27.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds