Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30786 * 1 3 3 Si 1.86801 * 119.99990 * 2 1 4 4 H 1.48497 * 109.47043 * 239.99434 * 3 2 1 5 5 H 1.48500 * 109.47385 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.46904 * 119.99770 * 3 2 1 7 7 C 1.40032 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99687 * 198.00420 * 7 2 1 9 9 C 1.40775 * 120.00140 * 18.00414 * 7 2 1 10 10 C 1.41080 * 120.07868 * 205.07915 * 9 7 2 11 11 C 1.36014 * 119.92004 * 180.25453 * 10 9 7 12 12 C 1.40430 * 120.08119 * 359.50084 * 11 10 9 13 13 N 1.35971 * 119.92876 * 180.25618 * 12 11 10 14 14 C 1.30811 * 120.00490 * 134.99510 * 13 12 11 15 15 C 1.46760 * 120.00053 * 179.97438 * 14 13 12 16 16 C 1.40041 * 120.21585 * 179.72645 * 15 14 13 17 17 C 1.37797 * 119.85938 * 179.79444 * 16 15 14 18 18 Br 1.89092 * 119.84392 * 180.25437 * 17 16 15 19 19 C 1.38685 * 120.31014 * 0.46024 * 17 16 15 20 20 C 1.38144 * 120.44921 * 359.79267 * 19 17 16 21 21 C 1.38581 * 120.12682 * 359.97438 * 20 19 17 22 22 O 1.35693 * 120.15477 * 180.02562 * 21 20 19 23 23 C 1.40438 * 120.15378 * 0.22930 * 12 11 10 24 24 C 1.36023 * 120.07909 * 0.02665 * 23 12 11 25 25 H 0.97002 * 120.00249 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.04207 * 0.02949 * 10 9 7 27 27 H 1.08004 * 119.96338 * 179.77889 * 11 10 9 28 28 H 1.07997 * 119.99771 * 0.02562 * 14 13 12 29 29 H 1.07993 * 120.06897 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.77752 * 179.76652 * 19 17 16 31 31 H 1.08000 * 119.93154 * 179.97438 * 20 19 17 32 32 H 0.96693 * 113.99717 * 269.97549 * 22 21 20 33 33 H 1.08003 * 119.96449 * 180.02562 * 23 12 11 34 34 H 1.08000 * 120.04009 * 180.02562 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 3.0957 1.6963 -1.2124 5 1 1.2769 2.7465 -0.0006 6 1 3.0956 1.6964 1.2126 7 6 2.0080 -1.2127 0.0005 8 1 3.0483 -1.2354 0.2896 9 6 1.3559 -2.4022 -0.3757 10 6 1.8239 -3.6457 0.0986 11 6 1.1945 -4.7933 -0.2712 12 6 0.0737 -4.7408 -1.1156 13 7 -0.5563 -5.8896 -1.4791 14 6 -1.8622 -5.9579 -1.4470 15 6 -2.5421 -7.1977 -1.8399 16 6 -3.9397 -7.2776 -1.8019 17 6 -4.5707 -8.4440 -2.1764 18 35 -6.4582 -8.5490 -2.1317 19 6 -3.8277 -9.5426 -2.5819 20 6 -2.4482 -9.4796 -2.6193 21 6 -1.7949 -8.3142 -2.2512 22 8 -0.4399 -8.2516 -2.2882 23 6 -0.3985 -3.5043 -1.5851 24 6 0.2292 -2.3530 -1.2235 25 1 -0.4850 0.8400 0.0004 26 1 2.6832 -3.6866 0.7516 27 1 1.5544 -5.7460 0.0886 28 1 -2.4401 -5.1015 -1.1322 29 1 -4.5219 -6.4257 -1.4832 30 1 -4.3310 -10.4537 -2.8701 31 1 -1.8779 -10.3403 -2.9361 32 1 -0.0113 -8.5172 -1.4632 33 1 -1.2610 -3.4674 -2.2340 34 1 -0.1347 -1.4024 -1.5846 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000067107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = 12.398477 kcal Electronic energy + Delta-G solvation = -20022.762076 eV Core-core repulsion = 16738.253857 eV Total energy + Delta-G solvation = -3284.508219 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 345.011 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.82945 -39.82403 -37.60220 -37.09609 -35.20735 -32.83587 -32.53359 -31.52642 -30.74692 -29.40077 -27.22296 -24.94765 -23.51335 -23.00618 -22.60594 -20.78148 -19.37594 -19.08183 -17.96220 -17.19261 -17.04531 -16.26266 -16.14456 -15.76461 -15.61646 -15.01867 -14.69011 -14.64984 -14.09542 -14.03041 -13.76406 -13.63006 -13.23413 -12.90039 -12.85255 -12.57360 -12.50750 -12.35822 -11.80920 -11.59972 -11.55482 -11.31845 -11.25915 -11.02255 -10.49548 -9.85330 -9.63988 -9.47894 -8.89346 -8.69760 -6.36132 -0.41703 0.08008 0.60968 0.64896 1.08148 1.35361 1.40127 1.49472 1.80133 2.14954 2.54981 2.74209 3.32394 3.38715 3.65055 3.76257 4.03727 4.11374 4.24172 4.35549 4.39414 4.60665 4.76148 4.88444 4.95128 5.01499 5.08269 5.12291 5.18016 5.30342 5.41090 5.55932 5.63615 5.75614 5.97255 6.04861 6.19787 6.51316 6.77047 6.82692 6.92670 7.30653 8.17143 Molecular weight = 345.01amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.002233 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.034093 B =12536.679261 C =13706.304309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.033 3.967 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.266 1.266 6 H -0.255 1.255 7 C -0.477 4.477 8 H 0.087 0.913 9 C 0.085 3.915 10 C -0.235 4.235 11 C -0.055 4.055 12 C -0.083 4.083 13 N -0.421 5.421 14 C 0.115 3.885 15 C -0.091 4.091 16 C -0.058 4.058 17 C -0.112 4.112 18 Br -0.042 7.042 19 C -0.061 4.061 20 C -0.143 4.143 21 C 0.148 3.852 22 O -0.486 6.486 23 C -0.115 4.115 24 C -0.183 4.183 25 H 0.294 0.706 26 H 0.111 0.889 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.145 0.855 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.404 0.596 33 H 0.097 0.903 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -16.331 -3.090 20.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.184 4.184 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.179 1.179 7 C -0.505 4.505 8 H 0.105 0.895 9 C 0.082 3.918 10 C -0.255 4.255 11 C -0.074 4.074 12 C -0.186 4.186 13 N -0.126 5.126 14 C -0.085 4.085 15 C -0.093 4.093 16 C -0.080 4.080 17 C -0.192 4.192 18 Br 0.043 6.957 19 C -0.082 4.082 20 C -0.162 4.162 21 C 0.100 3.900 22 O -0.298 6.298 23 C -0.135 4.135 24 C -0.203 4.203 25 H 0.105 0.895 26 H 0.129 0.871 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.163 0.837 30 H 0.180 0.820 31 H 0.180 0.820 32 H 0.263 0.737 33 H 0.115 0.885 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -11.972 -16.448 -3.785 20.693 hybrid contribution 0.308 1.677 0.661 1.829 sum -11.663 -14.771 -3.124 19.078 Atomic orbital electron populations 1.69840 1.09300 1.31382 1.32759 1.26931 0.95526 1.04974 0.90973 0.85160 0.78801 0.74969 0.80340 1.18409 1.19010 1.17879 1.19930 0.98828 0.92298 1.39400 0.89528 1.18072 0.91614 0.93389 0.88736 1.20869 1.04785 0.92617 1.07273 1.20373 0.93200 0.97585 0.96258 1.18431 1.02025 0.88298 1.09841 1.68436 1.10223 1.25221 1.08709 1.24157 0.91319 0.95207 0.97867 1.19263 0.93038 0.93691 1.03289 1.21226 0.92317 0.97576 0.96848 1.21690 0.91080 0.97441 1.08974 1.96717 1.02227 1.98794 1.97950 1.21371 0.93081 0.97854 0.95872 1.21623 0.94528 0.97761 1.02281 1.19033 0.84185 0.91775 0.94977 1.84722 1.14369 1.90286 1.40461 1.21129 0.98482 0.93018 1.00913 1.20878 1.00634 0.96755 1.02011 0.89503 0.87090 0.86244 0.88773 0.83712 0.81976 0.81995 0.73667 0.88452 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.76 10.96 21.84 0.24 -40.52 16 2 C 0.03 1.62 5.12 85.28 0.44 2.05 16 3 Si 0.99 36.22 29.60 68.60 2.03 38.25 16 4 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 5 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 6 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 7 C -0.48 -24.79 9.02 23.33 0.21 -24.58 16 8 H 0.09 4.26 7.91 -2.91 -0.02 4.23 16 9 C 0.08 4.54 5.57 -21.26 -0.12 4.42 16 10 C -0.24 -11.52 9.72 22.45 0.22 -11.30 16 11 C -0.05 -2.52 9.93 22.29 0.22 -2.29 16 12 C -0.08 -3.86 6.20 39.57 0.25 -3.62 16 13 N -0.42 -17.05 8.23 -182.00 -1.50 -18.55 16 14 C 0.12 4.05 9.83 87.07 0.86 4.91 16 15 C -0.09 -2.56 5.88 -20.06 -0.12 -2.68 16 16 C -0.06 -1.35 9.52 22.60 0.22 -1.14 16 17 C -0.11 -2.25 6.22 22.27 0.14 -2.11 16 18 Br -0.04 -0.74 33.69 -20.37 -0.69 -1.43 16 19 C -0.06 -1.04 9.77 22.35 0.22 -0.82 16 20 C -0.14 -2.68 9.97 22.33 0.22 -2.46 16 21 C 0.15 3.82 6.73 22.90 0.15 3.97 16 22 O -0.49 -13.58 11.37 -90.12 -1.02 -14.60 16 23 C -0.12 -5.65 9.10 22.29 0.20 -5.45 16 24 C -0.18 -9.73 8.62 22.45 0.19 -9.54 16 25 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 26 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 27 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.09 3.34 7.50 -2.91 -0.02 3.31 16 29 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 32 H 0.40 8.67 9.06 -74.06 -0.67 8.00 16 33 H 0.10 4.45 7.65 -2.91 -0.02 4.42 16 34 H 0.10 5.75 6.16 -2.91 -0.02 5.73 16 Total: -1.00 -60.79 323.23 2.84 -57.96 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: 0.48 Total: 29.53 kcal Atomic # 6 Polarization: -53.93 SS G_CDS: 3.30 Total: -50.64 kcal Atomic # 7 Polarization: -57.81 SS G_CDS: -1.26 Total: -59.07 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.02 Total: -14.60 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 35 Polarization: -0.74 SS G_CDS: -0.69 Total: -1.43 kcal Total: -60.79 2.84 -57.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000067107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.355 kcal (2) G-P(sol) polarization free energy of solvation -60.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds