Wall clock time and date at job start Tue Mar 31 2020 06:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86803 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47107 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.46933 * 29.99779 * 3 2 1 6 6 H 1.48500 * 109.47311 * 149.99774 * 3 2 1 7 7 C 1.39906 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99770 * 175.58825 * 7 2 1 9 9 C 1.41130 * 120.00246 * 355.58927 * 7 2 1 10 10 C 1.40885 * 120.16193 * 214.77429 * 9 7 2 11 11 C 1.36364 * 119.82832 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16633 * 359.97438 * 11 10 9 13 13 N 1.39132 * 119.83189 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99765 * 35.32197 * 13 12 11 15 15 O 1.21563 * 120.00292 * 355.70651 * 14 13 12 16 16 C 1.47735 * 119.99324 * 175.70651 * 14 13 12 17 17 C 1.39646 * 120.16204 * 359.96154 * 16 14 13 18 18 C 1.37889 * 119.86116 * 179.97438 * 17 16 14 19 19 C 1.38418 * 120.17953 * 0.02562 * 18 17 16 20 20 C 1.38289 * 120.31426 * 0.02562 * 19 18 17 21 21 C 1.38105 * 120.13891 * 359.96442 * 20 19 18 22 22 Br 1.89097 * 120.09110 * 180.02562 * 21 20 19 23 23 C 1.39505 * 120.32756 * 0.27663 * 12 11 10 24 24 C 1.36361 * 120.17060 * 359.44305 * 23 12 11 25 25 H 0.97000 * 119.99411 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.08576 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.91214 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99555 * 215.32107 * 13 12 11 29 29 H 1.08001 * 120.06337 * 0.02562 * 17 16 14 30 30 H 1.08004 * 119.91352 * 180.29595 * 18 17 16 31 31 H 1.08000 * 119.84151 * 180.02562 * 19 18 17 32 32 H 1.08002 * 119.93044 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.91467 * 179.70065 * 23 12 11 34 34 H 1.07994 * 120.08684 * 180.28041 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0714 9 6 1.3058 -2.4320 0.0951 10 6 1.8650 -3.5181 0.7969 11 6 1.1805 -4.6944 0.8836 12 6 -0.0706 -4.8236 0.2798 13 7 -0.7626 -6.0271 0.3721 14 6 -0.6809 -6.7669 1.4958 15 8 0.0580 -6.4229 2.3977 16 6 -1.4893 -7.9960 1.6311 17 6 -2.3397 -8.3939 0.5974 18 6 -3.0910 -9.5425 0.7301 19 6 -3.0046 -10.3010 1.8848 20 6 -2.1657 -9.9132 2.9134 21 6 -1.4071 -8.7653 2.7943 22 35 -0.2599 -8.2368 4.2015 23 6 -0.6283 -3.7542 -0.4212 24 6 0.0418 -2.5700 -0.5115 25 1 -0.4849 0.8401 -0.0004 26 1 2.8335 -3.4196 1.2644 27 1 1.6081 -5.5279 1.4209 28 1 -1.3039 -6.3336 -0.3722 29 1 -2.4081 -7.8036 -0.3044 30 1 -3.7454 -9.8536 -0.0708 31 1 -3.5953 -11.1998 1.9827 32 1 -2.1034 -10.5095 3.8118 33 1 -1.5951 -3.8631 -0.8901 34 1 -0.3933 -1.7416 -1.0507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000094658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:38 Heat of formation + Delta-G solvation = 31.908706 kcal Electronic energy + Delta-G solvation = -20476.395903 eV Core-core repulsion = 17192.733711 eV Total energy + Delta-G solvation = -3283.662192 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 345.011 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.25919 -38.64432 -37.09809 -34.53348 -33.07173 -32.31363 -31.46183 -29.56890 -29.32433 -28.70115 -25.29844 -23.72263 -22.53240 -21.53970 -20.77615 -19.75591 -18.04307 -17.28807 -16.40633 -16.08667 -15.36108 -15.14361 -14.84791 -14.75215 -13.94169 -13.79391 -13.68350 -13.30967 -12.77248 -12.66371 -12.14756 -11.95128 -11.69023 -11.44903 -11.38118 -11.15066 -11.03022 -10.86416 -10.77015 -10.52223 -9.82439 -9.47012 -9.34627 -9.26617 -8.96218 -8.82844 -8.53222 -7.53411 -6.85039 -6.61496 -4.33557 0.58640 0.91590 1.68988 2.60148 2.98322 3.09412 3.10590 3.14175 3.23513 3.58796 3.80459 3.98666 4.47418 4.58769 4.69968 4.73754 5.00658 5.12588 5.29856 5.51121 5.66329 5.87160 5.90419 6.06378 6.19413 6.43690 6.47319 6.75033 6.92832 7.07372 7.20946 7.30233 7.64734 7.74008 7.87510 8.06909 8.24818 8.32259 8.62199 8.72552 8.93230 9.00418 10.29364 Molecular weight = 345.01amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.002891 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.164673 B = 9684.211830 C =10623.399674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.205 4.205 11 C -0.083 4.083 12 C 0.004 3.996 13 N -0.643 5.643 14 C 0.527 3.473 15 O -0.496 6.496 16 C -0.100 4.100 17 C -0.085 4.085 18 C -0.115 4.115 19 C -0.098 4.098 20 C -0.102 4.102 21 C -0.047 4.047 22 Br -0.010 7.010 23 C -0.120 4.120 24 C -0.142 4.142 25 H 0.278 0.722 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.392 0.608 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.090 0.910 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.598 -18.730 2.434 20.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.491 4.491 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.225 4.225 11 C -0.103 4.103 12 C -0.089 4.089 13 N -0.286 5.286 14 C 0.313 3.687 15 O -0.371 6.371 16 C -0.106 4.106 17 C -0.105 4.105 18 C -0.133 4.133 19 C -0.117 4.117 20 C -0.122 4.122 21 C -0.129 4.129 22 Br 0.077 6.923 23 C -0.140 4.140 24 C -0.162 4.162 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.227 0.773 29 H 0.152 0.848 30 H 0.151 0.849 31 H 0.151 0.849 32 H 0.154 0.846 33 H 0.109 0.891 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.821 -18.096 3.647 19.680 hybrid contribution -0.405 0.503 -0.648 0.915 sum -7.226 -17.594 2.999 19.255 Atomic orbital electron populations 1.69763 1.07282 1.28696 1.38095 1.25881 0.94944 1.01167 0.92568 0.86198 0.80264 0.80498 0.79029 1.19532 1.20308 1.18716 1.19503 0.94744 0.90237 1.44601 0.90610 1.17730 0.92272 0.92003 0.88184 1.20809 1.01244 0.94943 1.05511 1.20418 0.92661 0.97889 0.99301 1.17228 0.94240 0.85605 1.11779 1.42893 1.48631 1.21283 1.15812 1.18132 0.83612 0.83870 0.83078 1.90946 1.37796 1.69730 1.38632 1.19980 0.99370 0.96672 0.94534 1.21375 0.94668 0.96631 0.97787 1.21215 0.99198 0.94740 0.98155 1.21325 0.97671 0.99653 0.93085 1.21124 0.95919 0.95153 0.99970 1.22059 0.98983 0.97123 0.94691 1.96806 1.62347 1.91982 1.41129 1.20307 0.98313 0.93142 1.02244 1.21183 0.97297 0.95515 1.02155 0.91149 0.88588 0.87283 0.77311 0.84794 0.84879 0.84883 0.84572 0.89137 0.85031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.14 10.59 55.55 0.59 -20.56 16 2 C 0.07 1.76 5.42 -17.34 -0.09 1.67 16 3 Si 0.92 19.08 29.56 -169.99 -5.03 14.06 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.31 9.02 -37.86 -0.34 -12.65 16 8 H 0.08 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.70 5.55 -106.80 -0.59 2.11 16 10 C -0.21 -5.22 9.74 -39.26 -0.38 -5.60 16 11 C -0.08 -1.99 8.61 -39.78 -0.34 -2.33 16 12 C 0.00 0.08 6.30 -83.60 -0.53 -0.44 16 13 N -0.64 -11.40 5.25 -10.62 -0.06 -11.45 16 14 C 0.53 9.51 7.59 -12.38 -0.09 9.42 16 15 O -0.50 -10.52 10.89 5.31 0.06 -10.47 16 16 C -0.10 -1.42 5.88 -104.95 -0.62 -2.04 16 17 C -0.09 -0.90 9.54 -39.18 -0.37 -1.27 16 18 C -0.11 -0.94 10.03 -39.64 -0.40 -1.34 16 19 C -0.10 -0.79 10.04 -39.50 -0.40 -1.19 16 20 C -0.10 -1.02 9.78 -39.61 -0.39 -1.41 16 21 C -0.05 -0.64 6.26 -39.09 -0.24 -0.89 16 22 Br -0.01 -0.14 30.40 -68.01 -2.07 -2.21 16 23 C -0.12 -2.72 9.90 -39.79 -0.39 -3.12 16 24 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 25 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 26 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.11 2.59 6.22 -52.49 -0.33 2.26 16 28 H 0.39 5.42 6.86 -40.82 -0.28 5.14 16 29 H 0.13 1.14 6.41 -52.49 -0.34 0.80 16 30 H 0.13 0.71 8.06 -52.48 -0.42 0.28 16 31 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 LS Contribution 312.33 15.07 4.71 4.71 Total: -1.00 -30.54 312.33 -10.24 -40.78 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.93 Total: 8.19 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -5.52 Total: -23.05 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.53 Total: -32.01 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.06 Total: -10.47 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.06 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.07 Total: -2.21 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.54 -10.24 -40.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000094658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.689 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds