Wall clock time and date at job start Tue Mar 31 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30872 * 1 3 3 Si 1.86803 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47107 * 270.00165 * 3 2 1 5 5 H 1.48500 * 109.46933 * 29.99779 * 3 2 1 6 6 H 1.48500 * 109.47311 * 149.99774 * 3 2 1 7 7 C 1.39906 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99770 * 175.58825 * 7 2 1 9 9 C 1.41130 * 120.00246 * 355.58927 * 7 2 1 10 10 C 1.40885 * 120.16193 * 214.77429 * 9 7 2 11 11 C 1.36364 * 119.82832 * 180.02562 * 10 9 7 12 12 C 1.39513 * 120.16633 * 359.97438 * 11 10 9 13 13 N 1.39132 * 119.83189 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99765 * 35.32197 * 13 12 11 15 15 O 1.21563 * 120.00292 * 355.70651 * 14 13 12 16 16 C 1.47735 * 119.99324 * 175.70651 * 14 13 12 17 17 C 1.39646 * 120.16204 * 359.96154 * 16 14 13 18 18 C 1.37889 * 119.86116 * 179.97438 * 17 16 14 19 19 C 1.38418 * 120.17953 * 0.02562 * 18 17 16 20 20 C 1.38289 * 120.31426 * 0.02562 * 19 18 17 21 21 C 1.38105 * 120.13891 * 359.96442 * 20 19 18 22 22 Br 1.89097 * 120.09110 * 180.02562 * 21 20 19 23 23 C 1.39505 * 120.32756 * 0.27663 * 12 11 10 24 24 C 1.36361 * 120.17060 * 359.44305 * 23 12 11 25 25 H 0.97000 * 119.99411 * 0.02562 * 1 2 3 26 26 H 1.07993 * 120.08576 * 359.97438 * 10 9 7 27 27 H 1.07997 * 119.91214 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99555 * 215.32107 * 13 12 11 29 29 H 1.08001 * 120.06337 * 0.02562 * 17 16 14 30 30 H 1.08004 * 119.91352 * 180.29595 * 18 17 16 31 31 H 1.08000 * 119.84151 * 180.02562 * 19 18 17 32 32 H 1.08002 * 119.93044 * 179.97438 * 20 19 18 33 33 H 1.08002 * 119.91467 * 179.70065 * 23 12 11 34 34 H 1.07994 * 120.08684 * 180.28041 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4402 0.7001 7 6 2.0082 -1.2116 0.0005 8 1 3.0859 -1.2130 -0.0714 9 6 1.3058 -2.4320 0.0951 10 6 1.8650 -3.5181 0.7969 11 6 1.1805 -4.6944 0.8836 12 6 -0.0706 -4.8236 0.2798 13 7 -0.7626 -6.0271 0.3721 14 6 -0.6809 -6.7669 1.4958 15 8 0.0580 -6.4229 2.3977 16 6 -1.4893 -7.9960 1.6311 17 6 -2.3397 -8.3939 0.5974 18 6 -3.0910 -9.5425 0.7301 19 6 -3.0046 -10.3010 1.8848 20 6 -2.1657 -9.9132 2.9134 21 6 -1.4071 -8.7653 2.7943 22 35 -0.2599 -8.2368 4.2015 23 6 -0.6283 -3.7542 -0.4212 24 6 0.0418 -2.5700 -0.5115 25 1 -0.4849 0.8401 -0.0004 26 1 2.8335 -3.4196 1.2644 27 1 1.6081 -5.5279 1.4209 28 1 -1.3039 -6.3336 -0.3722 29 1 -2.4081 -7.8036 -0.3044 30 1 -3.7454 -9.8536 -0.0708 31 1 -3.5953 -11.1998 1.9827 32 1 -2.1034 -10.5095 3.8118 33 1 -1.5951 -3.8631 -0.8901 34 1 -0.3933 -1.7416 -1.0507 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000094658.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:37 Heat of formation + Delta-G solvation = 15.210114 kcal Electronic energy + Delta-G solvation = -20477.120008 eV Core-core repulsion = 17192.733711 eV Total energy + Delta-G solvation = -3284.386297 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 345.011 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54072 -39.86148 -38.74373 -36.21713 -34.80887 -33.23368 -32.51329 -31.45786 -30.60100 -30.13012 -27.01180 -24.90562 -23.55556 -23.18586 -22.38932 -21.23661 -19.36970 -19.10584 -17.94915 -17.04450 -16.96536 -16.24712 -16.22947 -15.87282 -15.67169 -15.00508 -14.86807 -14.53368 -14.39025 -14.07423 -13.90380 -13.58351 -13.23853 -12.86801 -12.79399 -12.69437 -12.49616 -12.22361 -11.93517 -11.82117 -11.53953 -11.36551 -11.16014 -10.68617 -10.10206 -9.90330 -9.75157 -9.44720 -8.71739 -8.50521 -6.33025 -0.33403 0.15235 0.72579 0.85178 1.14922 1.39284 1.46664 1.53847 1.92149 2.22659 2.26645 2.70450 2.83351 3.60096 3.68157 3.75354 4.02619 4.28732 4.33256 4.38918 4.48347 4.55839 4.80080 4.92618 5.05775 5.13702 5.15623 5.22530 5.34329 5.35271 5.43186 5.69919 5.76036 5.90946 6.02379 6.13907 6.39209 6.66307 6.69461 6.96660 6.99585 7.34145 8.41966 Molecular weight = 345.01amu Principal moments of inertia in cm(-1) A = 0.022214 B = 0.002891 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.164673 B = 9684.211830 C =10623.399674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.498 4.498 8 H 0.071 0.929 9 C 0.069 3.931 10 C -0.221 4.221 11 C -0.094 4.094 12 C 0.023 3.977 13 N -0.638 5.638 14 C 0.525 3.475 15 O -0.535 6.535 16 C -0.131 4.131 17 C -0.082 4.082 18 C -0.104 4.104 19 C -0.079 4.079 20 C -0.105 4.105 21 C -0.067 4.067 22 Br -0.043 7.043 23 C -0.118 4.118 24 C -0.158 4.158 25 H 0.285 0.715 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.414 0.586 29 H 0.154 0.846 30 H 0.174 0.826 31 H 0.175 0.825 32 H 0.154 0.846 33 H 0.126 0.874 34 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 -20.854 1.379 23.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.188 1.188 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.066 3.934 10 C -0.241 4.241 11 C -0.114 4.114 12 C -0.071 4.071 13 N -0.283 5.283 14 C 0.313 3.687 15 O -0.413 6.413 16 C -0.136 4.136 17 C -0.102 4.102 18 C -0.122 4.122 19 C -0.098 4.098 20 C -0.125 4.125 21 C -0.148 4.148 22 Br 0.044 6.956 23 C -0.138 4.138 24 C -0.178 4.178 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.126 0.874 28 H 0.252 0.748 29 H 0.171 0.829 30 H 0.192 0.808 31 H 0.193 0.807 32 H 0.172 0.828 33 H 0.144 0.856 34 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.346 -20.267 2.568 22.465 hybrid contribution 0.204 0.862 -0.321 0.942 sum -9.142 -19.405 2.247 21.568 Atomic orbital electron populations 1.69823 1.08539 1.29945 1.38512 1.26728 0.95821 1.04257 0.91575 0.85113 0.78644 0.75848 0.79512 1.18290 1.19401 1.18804 1.19719 0.94812 0.91391 1.46959 0.91032 1.18028 0.93385 0.92619 0.89335 1.20917 1.01579 0.95566 1.06032 1.20514 0.93672 0.97394 0.99858 1.17270 0.93419 0.87077 1.09315 1.42774 1.48625 1.19895 1.17042 1.18834 0.83069 0.84623 0.82165 1.90927 1.39519 1.70950 1.39885 1.19734 1.01409 0.95858 0.96642 1.21669 0.93662 0.97649 0.97194 1.21711 0.98245 0.93134 0.99130 1.21869 0.95949 1.00270 0.91699 1.21433 0.95495 0.93988 1.01554 1.22219 0.99911 0.98758 0.93892 1.96765 1.63713 1.92410 1.42738 1.20559 0.99314 0.92058 1.01829 1.21168 0.97435 0.96429 1.02799 0.90469 0.88809 0.87432 0.74796 0.82896 0.80850 0.80742 0.82832 0.85643 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.80 10.59 21.82 0.23 -44.57 16 2 C 0.03 1.46 5.42 85.24 0.46 1.92 16 3 Si 0.99 39.71 29.56 68.60 2.03 41.74 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 7 C -0.50 -27.83 9.02 23.38 0.21 -27.62 16 8 H 0.07 3.88 7.85 -2.91 -0.02 3.85 16 9 C 0.07 3.85 5.55 -21.27 -0.12 3.73 16 10 C -0.22 -11.80 9.74 22.48 0.22 -11.58 16 11 C -0.09 -4.67 8.61 22.14 0.19 -4.48 16 12 C 0.02 1.01 6.30 38.60 0.24 1.25 16 13 N -0.64 -21.90 5.25 -305.80 -1.60 -23.50 16 14 C 0.52 18.77 7.59 86.75 0.66 19.43 16 15 O -0.54 -23.31 10.89 -3.91 -0.04 -23.36 16 16 C -0.13 -3.52 5.88 -20.07 -0.12 -3.63 16 17 C -0.08 -1.43 9.54 22.53 0.21 -1.21 16 18 C -0.10 -1.13 10.03 22.23 0.22 -0.91 16 19 C -0.08 -0.84 10.04 22.32 0.22 -0.62 16 20 C -0.10 -1.78 9.78 22.25 0.22 -1.56 16 21 C -0.07 -1.72 6.26 22.59 0.14 -1.58 16 22 Br -0.04 -1.32 30.40 -20.37 -0.62 -1.94 16 23 C -0.12 -5.30 9.90 22.14 0.22 -5.09 16 24 C -0.16 -8.34 8.61 22.48 0.19 -8.14 16 25 H 0.28 13.78 8.30 -92.71 -0.77 13.01 16 26 H 0.09 4.86 8.06 -2.91 -0.02 4.83 16 27 H 0.11 5.32 6.22 -2.91 -0.02 5.30 16 28 H 0.41 10.42 6.86 -92.71 -0.64 9.78 16 29 H 0.15 1.95 6.41 -2.91 -0.02 1.93 16 30 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 31 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 32 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 33 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 34 H 0.12 6.54 6.13 -2.91 -0.02 6.52 16 Total: -1.00 -71.12 312.33 3.70 -67.42 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.52 Total: 24.30 kcal Atomic # 6 Polarization: -43.28 SS G_CDS: 3.18 Total: -40.09 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -1.37 Total: -68.08 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.04 Total: -23.36 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Atomic # 35 Polarization: -1.32 SS G_CDS: -0.62 Total: -1.94 kcal Total: -71.12 3.70 -67.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000094658.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.632 kcal (2) G-P(sol) polarization free energy of solvation -71.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds