Wall clock time and date at job start Tue Mar 31 2020 07:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38232 * 120.00292 * 2 1 4 4 C 1.50708 * 119.99973 * 359.97438 * 3 2 1 5 5 C 1.38236 * 120.00339 * 180.02562 * 3 2 1 6 6 C 1.50703 * 120.00062 * 179.97438 * 5 3 2 7 7 C 1.38237 * 119.99938 * 0.25202 * 5 3 2 8 8 C 1.50695 * 119.99842 * 179.72711 * 7 5 3 9 9 S 1.81003 * 109.47058 * 90.00158 * 8 7 5 10 10 C 1.76200 * 99.99987 * 179.97438 * 9 8 7 11 11 N 1.32387 * 126.26001 * 0.02869 * 10 9 8 12 12 N 1.28515 * 110.20495 * 179.97438 * 11 10 9 13 13 C 1.33094 * 109.74674 * 0.02562 * 12 11 10 14 14 C 1.39774 * 126.56611 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00176 * 179.97438 * 14 13 12 16 16 C 1.40075 * 119.99915 * 359.96760 * 14 13 12 17 17 N 1.30812 * 120.00336 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46820 * 90.00034 * 18 16 14 20 20 H 1.48502 * 109.47535 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47199 * 330.00425 * 18 16 14 22 22 N 1.36673 * 126.25772 * 179.70820 * 10 9 8 23 23 C 1.46501 * 127.15064 * 359.97438 * 22 10 9 24 24 C 1.38232 * 119.99568 * 359.49524 * 7 5 3 25 25 C 1.50707 * 119.99786 * 180.25131 * 24 7 5 26 26 C 1.38232 * 120.00394 * 0.48457 * 24 7 5 27 27 C 1.50700 * 120.00144 * 179.77252 * 26 24 7 28 28 H 1.09003 * 109.47151 * 90.00129 * 1 2 3 29 29 H 1.09003 * 109.47245 * 210.00352 * 1 2 3 30 30 H 1.09003 * 109.47192 * 329.99705 * 1 2 3 31 31 H 1.09004 * 109.46714 * 270.02761 * 4 3 2 32 32 H 1.08997 * 109.46626 * 30.01889 * 4 3 2 33 33 H 1.08990 * 109.46919 * 150.02296 * 4 3 2 34 34 H 1.09002 * 109.47152 * 89.99927 * 6 5 3 35 35 H 1.09001 * 109.46980 * 330.00027 * 6 5 3 36 36 H 1.09004 * 109.47113 * 210.00008 * 6 5 3 37 37 H 1.09010 * 109.46972 * 209.99848 * 8 7 5 38 38 H 1.08998 * 109.47619 * 330.00005 * 8 7 5 39 39 H 0.97000 * 120.00539 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47000 * 90.02107 * 23 22 10 41 41 H 1.09000 * 109.46999 * 210.01900 * 23 22 10 42 42 H 1.08998 * 109.47070 * 330.01508 * 23 22 10 43 43 H 1.08995 * 109.47412 * 270.23034 * 25 24 7 44 44 H 1.08997 * 109.46866 * 30.23435 * 25 24 7 45 45 H 1.09002 * 109.46921 * 150.23089 * 25 24 7 46 46 H 1.09002 * 109.46793 * 270.01885 * 27 26 24 47 47 H 1.09001 * 109.47621 * 30.01951 * 27 26 24 48 48 H 1.09004 * 109.47290 * 150.01916 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 1.4447 2.5023 -0.0006 5 6 3.5805 1.1971 -0.0005 6 6 4.3340 2.5022 -0.0011 7 6 4.2717 -0.0001 -0.0063 8 6 5.7786 0.0000 -0.0131 9 16 6.3897 -0.0039 1.6906 10 6 8.1263 -0.0039 1.3929 11 7 8.7177 -0.0011 0.2084 12 7 9.9950 -0.0015 0.3500 13 6 10.3039 -0.0052 1.6446 14 6 11.5891 -0.0063 2.1940 15 1 11.7181 -0.0090 3.2663 16 6 12.7099 -0.0041 1.3538 17 7 12.5539 -0.0004 0.0551 18 14 14.4276 -0.0048 2.0880 19 1 14.8834 -1.4052 2.2797 20 1 15.3591 0.6975 1.1692 21 1 14.4059 0.6924 3.3990 22 7 9.1092 -0.0007 2.3425 23 6 8.9342 0.0040 3.7970 24 6 3.5805 -1.1971 -0.0011 25 6 4.3340 -2.5023 -0.0017 26 6 2.1982 -1.1972 -0.0001 27 6 1.4447 -2.5023 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.2630 2.8164 -1.0284 32 1 0.4923 2.3721 0.5132 33 1 2.0338 3.2620 0.5129 34 1 4.5161 2.8171 1.0264 35 1 3.7447 3.2617 -0.5149 36 1 5.2863 2.3718 -0.5153 37 1 6.1397 -0.8889 -0.5306 38 1 6.1397 0.8911 -0.5266 39 1 13.3300 0.0015 -0.5268 40 1 8.8913 -1.0225 4.1611 41 1 9.7741 0.5197 4.2624 42 1 8.0070 0.5182 4.0497 43 1 4.5149 -2.8170 -1.0294 44 1 5.2867 -2.3720 0.5115 45 1 3.7453 -3.2620 0.5126 46 1 1.2626 -2.8171 -1.0271 47 1 2.0339 -3.2619 0.5142 48 1 0.4924 -2.3719 0.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000137750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:04 Heat of formation + Delta-G solvation = 70.228163 kcal Electronic energy + Delta-G solvation = -27450.917922 eV Core-core repulsion = 23825.180813 eV Total energy + Delta-G solvation = -3625.737109 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.48402 -40.30556 -35.04154 -35.00398 -33.68402 -33.29011 -29.84201 -29.74864 -29.30027 -28.70365 -27.10980 -26.46041 -25.53136 -24.19086 -24.17631 -20.83414 -20.55218 -19.50116 -19.42262 -17.33933 -16.98623 -16.17907 -15.46355 -15.15272 -14.91190 -14.71563 -14.43621 -14.00456 -13.87081 -13.81648 -13.53728 -13.38126 -13.25513 -12.99631 -12.74245 -12.66364 -12.61151 -12.46326 -12.34970 -12.21410 -12.12229 -11.82260 -11.73411 -11.42121 -11.30753 -11.17475 -10.96814 -10.90884 -10.68109 -10.67387 -10.39025 -10.21411 -9.69716 -9.60557 -8.67927 -8.40155 -8.39706 -8.20246 -8.19353 -6.80277 -6.64168 -4.56249 1.15370 1.39115 2.28878 2.88441 2.92084 3.06387 3.09847 3.37642 3.73117 3.87873 4.25674 4.43735 4.64064 4.69641 4.78965 4.88956 4.96013 5.04693 5.29352 5.33564 5.35128 5.38427 5.45132 5.48015 5.51749 5.55246 5.56457 5.58677 5.62184 5.68392 5.74340 5.78053 5.88828 5.89629 5.95660 6.00236 6.03906 6.05093 6.14707 6.36675 6.42705 6.60085 6.61851 6.79032 6.79057 6.89991 7.10006 7.25315 7.50412 7.90961 8.18666 8.71118 8.87325 10.28435 10.65796 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.002428 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.318015 B =11531.145045 C =11882.176759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.115 4.115 5 C -0.062 4.062 6 C -0.121 4.121 7 C -0.071 4.071 8 C -0.053 4.053 9 S -0.046 6.046 10 C 0.045 3.955 11 N -0.287 5.287 12 N -0.334 5.334 13 C 0.346 3.654 14 C -0.447 4.447 15 H 0.083 0.917 16 C 0.078 3.922 17 N -0.737 5.737 18 Si 0.920 3.080 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.263 1.263 22 N -0.515 5.515 23 C 0.102 3.898 24 C -0.062 4.062 25 C -0.126 4.126 26 C -0.094 4.094 27 C -0.116 4.116 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.279 0.721 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.439 0.092 2.208 20.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C -0.094 4.094 4 C -0.171 4.171 5 C -0.064 4.064 6 C -0.178 4.178 7 C -0.073 4.073 8 C -0.201 4.201 9 S 0.184 5.816 10 C -0.327 4.327 11 N -0.133 5.133 12 N -0.181 5.181 13 C 0.101 3.899 14 C -0.488 4.488 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.361 5.361 18 Si 0.744 3.256 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.187 1.187 22 N -0.217 5.217 23 C -0.043 4.043 24 C -0.064 4.064 25 C -0.182 4.182 26 C -0.094 4.094 27 C -0.173 4.173 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.738 0.106 1.492 20.792 hybrid contribution 1.578 -0.021 0.652 1.708 sum -19.160 0.085 2.144 19.280 Atomic orbital electron populations 1.20892 0.91654 1.02677 1.02101 1.19491 0.95526 0.92060 1.01061 1.19454 0.92734 0.94752 1.02461 1.20841 0.99794 0.94418 1.02057 1.19548 0.92833 0.94817 0.99221 1.20919 1.00139 0.93797 1.02895 1.19030 0.93098 0.92564 1.02613 1.22267 0.93216 1.07599 0.97031 1.84629 0.91665 1.95513 1.09841 1.25447 0.94510 1.22899 0.89842 1.74533 1.03762 1.15949 1.19019 1.75454 1.00912 1.29471 1.12249 1.21625 0.86021 0.95052 0.87182 1.18091 0.86742 1.49541 0.94380 0.89846 1.25791 1.01060 0.93324 0.94541 1.70009 1.32199 1.30445 1.03455 0.86133 0.80606 0.79183 0.79693 1.19376 1.19991 1.18666 1.46044 1.05733 1.64301 1.05657 1.21484 1.02187 1.01586 0.79064 1.19541 0.92830 0.94809 0.99181 1.20981 1.00850 0.93907 1.02499 1.19450 0.92761 0.94753 1.02443 1.20879 0.99784 0.94476 1.02113 0.91385 0.91399 0.91403 0.91451 0.91470 0.91384 0.90595 0.91608 0.90875 0.88331 0.88147 0.91002 0.92604 0.90396 0.91573 0.91120 0.90331 0.91240 0.91423 0.91218 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 9.20 36.00 0.33 -0.62 16 2 C -0.08 -0.91 5.88 -104.63 -0.62 -1.53 16 3 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 4 C -0.11 -1.03 8.79 36.01 0.32 -0.71 16 5 C -0.06 -0.84 5.88 -104.62 -0.62 -1.46 16 6 C -0.12 -1.51 8.79 36.01 0.32 -1.19 16 7 C -0.07 -1.05 5.13 -104.63 -0.54 -1.59 16 8 C -0.05 -0.91 4.20 36.00 0.15 -0.75 16 9 S -0.05 -0.86 21.38 -107.50 -2.30 -3.16 16 10 C 0.04 1.09 8.09 -87.28 -0.71 0.38 16 11 N -0.29 -7.93 11.62 30.89 0.36 -7.57 16 12 N -0.33 -10.11 10.48 31.26 0.33 -9.78 16 13 C 0.35 9.75 7.53 -154.81 -1.17 8.59 16 14 C -0.45 -11.93 9.04 -38.32 -0.35 -12.28 16 15 H 0.08 2.02 7.31 -52.49 -0.38 1.63 16 16 C 0.08 2.01 5.50 -17.30 -0.10 1.92 16 17 N -0.74 -20.39 11.94 55.56 0.66 -19.73 16 18 Si 0.92 18.63 29.56 -169.99 -5.03 13.60 16 19 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 22 N -0.52 -12.60 3.26 -123.18 -0.40 -13.00 16 23 C 0.10 1.90 10.87 59.85 0.65 2.55 16 24 C -0.06 -0.84 5.88 -104.62 -0.62 -1.45 16 25 C -0.13 -1.58 8.78 36.01 0.32 -1.27 16 26 C -0.09 -1.12 5.88 -104.62 -0.62 -1.73 16 27 C -0.12 -1.05 9.20 36.01 0.33 -0.71 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.49 5.95 -51.93 -0.31 0.18 16 30 H 0.07 0.49 5.95 -51.93 -0.31 0.18 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 33 H 0.07 0.59 6.70 -51.93 -0.35 0.24 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.68 6.70 -51.93 -0.35 0.33 16 36 H 0.07 1.00 5.94 -51.93 -0.31 0.70 16 37 H 0.10 1.77 6.72 -51.91 -0.35 1.42 16 38 H 0.10 1.80 5.94 -51.92 -0.31 1.49 16 39 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.08 1.36 7.54 -51.93 -0.39 0.97 16 42 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 1.13 6.37 -51.93 -0.33 0.80 16 45 H 0.07 0.74 5.95 -51.93 -0.31 0.43 16 46 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.60 5.95 -51.93 -0.31 0.29 16 48 H 0.07 0.51 5.95 -51.93 -0.31 0.20 16 LS Contribution 387.97 15.07 5.85 5.85 Total: -1.00 -33.24 387.97 -10.74 -43.98 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.70 Total: 3.40 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -3.51 Total: -13.60 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.95 Total: -50.07 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.30 Total: -3.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.24 -10.74 -43.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000137750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.206 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds