Wall clock time and date at job start Tue Mar 31 2020 07:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38232 * 120.00292 * 2 1 4 4 C 1.50708 * 119.99973 * 359.97438 * 3 2 1 5 5 C 1.38236 * 120.00339 * 180.02562 * 3 2 1 6 6 C 1.50703 * 120.00062 * 179.97438 * 5 3 2 7 7 C 1.38237 * 119.99938 * 0.25202 * 5 3 2 8 8 C 1.50695 * 119.99842 * 179.72711 * 7 5 3 9 9 S 1.81003 * 109.47058 * 90.00158 * 8 7 5 10 10 C 1.76200 * 99.99987 * 179.97438 * 9 8 7 11 11 N 1.32387 * 126.26001 * 0.02869 * 10 9 8 12 12 N 1.28515 * 110.20495 * 179.97438 * 11 10 9 13 13 C 1.33094 * 109.74674 * 0.02562 * 12 11 10 14 14 C 1.39774 * 126.56611 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00176 * 179.97438 * 14 13 12 16 16 C 1.40075 * 119.99915 * 359.96760 * 14 13 12 17 17 N 1.30812 * 120.00336 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00059 * 179.97438 * 16 14 13 19 19 H 1.48509 * 109.46820 * 90.00034 * 18 16 14 20 20 H 1.48502 * 109.47535 * 209.99857 * 18 16 14 21 21 H 1.48498 * 109.47199 * 330.00425 * 18 16 14 22 22 N 1.36673 * 126.25772 * 179.70820 * 10 9 8 23 23 C 1.46501 * 127.15064 * 359.97438 * 22 10 9 24 24 C 1.38232 * 119.99568 * 359.49524 * 7 5 3 25 25 C 1.50707 * 119.99786 * 180.25131 * 24 7 5 26 26 C 1.38232 * 120.00394 * 0.48457 * 24 7 5 27 27 C 1.50700 * 120.00144 * 179.77252 * 26 24 7 28 28 H 1.09003 * 109.47151 * 90.00129 * 1 2 3 29 29 H 1.09003 * 109.47245 * 210.00352 * 1 2 3 30 30 H 1.09003 * 109.47192 * 329.99705 * 1 2 3 31 31 H 1.09004 * 109.46714 * 270.02761 * 4 3 2 32 32 H 1.08997 * 109.46626 * 30.01889 * 4 3 2 33 33 H 1.08990 * 109.46919 * 150.02296 * 4 3 2 34 34 H 1.09002 * 109.47152 * 89.99927 * 6 5 3 35 35 H 1.09001 * 109.46980 * 330.00027 * 6 5 3 36 36 H 1.09004 * 109.47113 * 210.00008 * 6 5 3 37 37 H 1.09010 * 109.46972 * 209.99848 * 8 7 5 38 38 H 1.08998 * 109.47619 * 330.00005 * 8 7 5 39 39 H 0.97000 * 120.00539 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47000 * 90.02107 * 23 22 10 41 41 H 1.09000 * 109.46999 * 210.01900 * 23 22 10 42 42 H 1.08998 * 109.47070 * 330.01508 * 23 22 10 43 43 H 1.08995 * 109.47412 * 270.23034 * 25 24 7 44 44 H 1.08997 * 109.46866 * 30.23435 * 25 24 7 45 45 H 1.09002 * 109.46921 * 150.23089 * 25 24 7 46 46 H 1.09002 * 109.46793 * 270.01885 * 27 26 24 47 47 H 1.09001 * 109.47621 * 30.01951 * 27 26 24 48 48 H 1.09004 * 109.47290 * 150.01916 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 1.4447 2.5023 -0.0006 5 6 3.5805 1.1971 -0.0005 6 6 4.3340 2.5022 -0.0011 7 6 4.2717 -0.0001 -0.0063 8 6 5.7786 0.0000 -0.0131 9 16 6.3897 -0.0039 1.6906 10 6 8.1263 -0.0039 1.3929 11 7 8.7177 -0.0011 0.2084 12 7 9.9950 -0.0015 0.3500 13 6 10.3039 -0.0052 1.6446 14 6 11.5891 -0.0063 2.1940 15 1 11.7181 -0.0090 3.2663 16 6 12.7099 -0.0041 1.3538 17 7 12.5539 -0.0004 0.0551 18 14 14.4276 -0.0048 2.0880 19 1 14.8834 -1.4052 2.2797 20 1 15.3591 0.6975 1.1692 21 1 14.4059 0.6924 3.3990 22 7 9.1092 -0.0007 2.3425 23 6 8.9342 0.0040 3.7970 24 6 3.5805 -1.1971 -0.0011 25 6 4.3340 -2.5023 -0.0017 26 6 2.1982 -1.1972 -0.0001 27 6 1.4447 -2.5023 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.2630 2.8164 -1.0284 32 1 0.4923 2.3721 0.5132 33 1 2.0338 3.2620 0.5129 34 1 4.5161 2.8171 1.0264 35 1 3.7447 3.2617 -0.5149 36 1 5.2863 2.3718 -0.5153 37 1 6.1397 -0.8889 -0.5306 38 1 6.1397 0.8911 -0.5266 39 1 13.3300 0.0015 -0.5268 40 1 8.8913 -1.0225 4.1611 41 1 9.7741 0.5197 4.2624 42 1 8.0070 0.5182 4.0497 43 1 4.5149 -2.8170 -1.0294 44 1 5.2867 -2.3720 0.5115 45 1 3.7453 -3.2620 0.5126 46 1 1.2626 -2.8171 -1.0271 47 1 2.0339 -3.2619 0.5142 48 1 0.4924 -2.3719 0.5147 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000137750.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:03 Heat of formation + Delta-G solvation = 53.982209 kcal Electronic energy + Delta-G solvation = -27451.622399 eV Core-core repulsion = 23825.180813 eV Total energy + Delta-G solvation = -3626.441586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.157 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.46108 -41.25536 -36.02244 -35.90894 -35.62902 -35.14398 -31.37541 -30.73084 -30.62212 -29.64853 -28.31253 -27.93798 -27.38562 -25.18923 -25.07764 -22.79793 -22.41348 -20.48496 -20.42403 -19.26384 -17.95299 -17.85400 -17.25146 -16.56267 -16.41229 -16.00448 -15.84892 -15.23874 -15.04543 -14.81245 -14.72900 -14.51518 -14.23728 -13.97398 -13.95509 -13.82226 -13.66336 -13.62316 -13.54196 -13.19588 -13.12424 -13.10392 -12.94702 -12.78515 -12.75253 -12.56644 -12.18823 -11.98492 -11.96322 -11.72634 -11.63291 -11.58213 -11.52778 -11.44083 -10.58741 -10.38399 -10.28688 -9.22294 -9.13964 -8.55283 -8.54705 -6.59650 -0.01641 0.43475 0.77770 1.18795 1.33994 1.40598 1.57276 1.60954 2.17618 2.43906 2.49556 2.74893 3.33128 3.58477 3.72789 3.92124 3.96858 4.00409 4.05506 4.17638 4.34665 4.42364 4.48295 4.54433 4.58778 4.63082 4.63742 4.69957 4.70442 4.73364 4.77005 4.80422 4.85316 4.87977 4.94780 4.98689 5.05141 5.06495 5.13633 5.15895 5.25959 5.31014 5.44940 5.51440 5.55577 5.66674 5.67346 5.82470 6.02147 6.18155 6.20893 6.74719 6.91402 8.40447 8.63582 Molecular weight = 345.16amu Principal moments of inertia in cm(-1) A = 0.022846 B = 0.002428 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.318015 B =11531.145045 C =11882.176759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 C -0.099 4.099 4 C -0.114 4.114 5 C -0.077 4.077 6 C -0.118 4.118 7 C -0.095 4.095 8 C -0.043 4.043 9 S -0.001 6.001 10 C 0.055 3.945 11 N -0.331 5.331 12 N -0.389 5.389 13 C 0.317 3.683 14 C -0.471 4.471 15 H 0.103 0.897 16 C 0.028 3.972 17 N -0.789 5.789 18 Si 1.007 2.993 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.247 1.247 22 N -0.522 5.522 23 C 0.094 3.906 24 C -0.077 4.077 25 C -0.123 4.123 26 C -0.099 4.099 27 C -0.115 4.115 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.284 0.716 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.951 0.115 4.111 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.099 4.099 4 C -0.170 4.170 5 C -0.079 4.079 6 C -0.175 4.175 7 C -0.097 4.097 8 C -0.191 4.191 9 S 0.228 5.772 10 C -0.319 4.319 11 N -0.176 5.176 12 N -0.235 5.235 13 C 0.070 3.930 14 C -0.511 4.511 15 H 0.121 0.879 16 C -0.193 4.193 17 N -0.414 5.414 18 Si 0.826 3.174 19 H -0.185 1.185 20 H -0.195 1.195 21 H -0.170 1.170 22 N -0.223 5.223 23 C -0.049 4.049 24 C -0.079 4.079 25 C -0.179 4.179 26 C -0.100 4.100 27 C -0.171 4.171 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.090 0.910 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.268 0.128 3.413 23.517 hybrid contribution 2.057 -0.033 0.056 2.058 sum -21.211 0.095 3.469 21.493 Atomic orbital electron populations 1.20974 0.88966 1.04017 1.03223 1.19964 0.97504 0.91509 0.99183 1.19824 0.92111 0.96542 1.01471 1.20907 1.00253 0.92818 1.03035 1.19725 0.93951 0.94434 0.99748 1.20897 0.99456 0.94321 1.02794 1.18949 0.91285 0.94015 1.05468 1.22192 0.95325 1.05982 0.95585 1.84408 0.86761 1.94762 1.11252 1.26491 0.97339 1.18778 0.89300 1.74411 1.03412 1.18820 1.20942 1.75311 1.02254 1.31685 1.14255 1.22064 0.87697 0.95890 0.87349 1.18616 0.86815 1.50085 0.95577 0.87882 1.27009 1.05816 0.91822 0.94635 1.70161 1.33941 1.31803 1.05486 0.84847 0.73878 0.79553 0.79138 1.18533 1.19543 1.17011 1.46382 1.04733 1.63462 1.07732 1.21839 1.03878 1.03299 0.75884 1.19714 0.93955 0.94425 0.99757 1.20954 0.99912 0.94448 1.02623 1.19818 0.92131 0.96545 1.01459 1.20942 1.00252 0.92881 1.03049 0.90185 0.90104 0.90097 0.90393 0.89595 0.91186 0.90709 0.89408 0.93021 0.90019 0.89691 0.90546 0.90813 0.89190 0.89316 0.90905 0.92814 0.89114 0.90439 0.90981 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 9.20 71.23 0.66 -0.76 16 2 C -0.08 -1.60 5.88 -19.87 -0.12 -1.72 16 3 C -0.10 -2.16 5.88 -19.86 -0.12 -2.27 16 4 C -0.11 -1.71 8.79 71.24 0.63 -1.08 16 5 C -0.08 -2.04 5.88 -19.86 -0.12 -2.16 16 6 C -0.12 -2.96 8.79 71.24 0.63 -2.34 16 7 C -0.10 -2.85 5.13 -19.87 -0.10 -2.95 16 8 C -0.04 -1.54 4.20 71.23 0.30 -1.24 16 9 S 0.00 -0.05 21.38 -56.49 -1.21 -1.26 16 10 C 0.05 2.74 8.09 179.18 1.45 4.19 16 11 N -0.33 -19.44 11.62 -56.17 -0.65 -20.09 16 12 N -0.39 -24.95 10.48 -55.02 -0.58 -25.53 16 13 C 0.32 18.55 7.53 133.23 1.00 19.56 16 14 C -0.47 -25.64 9.04 23.09 0.21 -25.44 16 15 H 0.10 4.96 7.31 -2.91 -0.02 4.94 16 16 C 0.03 1.45 5.50 85.29 0.47 1.92 16 17 N -0.79 -45.57 11.94 21.85 0.26 -45.31 16 18 Si 1.01 38.31 29.56 68.60 2.03 40.33 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 20 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 21 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 22 N -0.52 -26.03 3.26 -543.62 -1.77 -27.81 16 23 C 0.09 3.40 10.87 127.77 1.39 4.79 16 24 C -0.08 -2.05 5.88 -19.87 -0.12 -2.16 16 25 C -0.12 -3.10 8.78 71.24 0.63 -2.48 16 26 C -0.10 -2.16 5.88 -19.87 -0.12 -2.28 16 27 C -0.12 -1.73 9.20 71.24 0.66 -1.08 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.08 0.80 5.95 -2.39 -0.01 0.78 16 30 H 0.08 0.80 5.95 -2.39 -0.01 0.78 16 31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.09 0.97 5.95 -2.39 -0.01 0.95 16 33 H 0.07 1.03 6.70 -2.39 -0.02 1.01 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 1.74 6.70 -2.39 -0.02 1.72 16 36 H 0.05 1.50 5.94 -2.38 -0.01 1.49 16 37 H 0.08 3.17 6.72 -2.39 -0.02 3.15 16 38 H 0.08 3.29 5.94 -2.40 -0.01 3.27 16 39 H 0.28 14.81 8.30 -92.71 -0.77 14.04 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.09 3.03 7.54 -2.39 -0.02 3.02 16 42 H 0.09 2.79 7.85 -2.39 -0.02 2.77 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.05 1.61 6.37 -2.39 -0.02 1.59 16 45 H 0.09 1.83 5.95 -2.39 -0.01 1.81 16 46 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 1.05 5.95 -2.39 -0.01 1.04 16 48 H 0.09 0.96 5.95 -2.38 -0.01 0.95 16 Total: -1.00 -77.45 387.97 6.40 -71.05 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 1.00 Total: 26.09 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 7.32 Total: -17.48 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -2.74 Total: -118.73 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.33 kcal Atomic # 16 Polarization: -0.05 SS G_CDS: -1.21 Total: -1.26 kcal Total: -77.45 6.40 -71.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000137750.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.028 kcal (2) G-P(sol) polarization free energy of solvation -77.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds