Wall clock time and date at job start Tue Mar 31 2020 06:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33509 * 126.72697 * 2 1 4 4 N 1.20654 * 113.40217 * 179.97438 * 3 2 1 5 5 C 1.30874 * 112.11262 * 0.02562 * 4 3 2 6 6 C 1.48297 * 127.44675 * 179.97438 * 5 4 3 7 7 C 1.39392 * 120.13224 * 180.02562 * 6 5 4 8 8 C 1.37980 * 119.88279 * 179.97438 * 7 6 5 9 9 C 1.38360 * 120.15701 * 0.02562 * 8 7 6 10 10 C 1.38274 * 120.26642 * 359.72117 * 9 8 7 11 11 C 1.38170 * 120.11059 * 0.55296 * 10 9 8 12 12 Cl 1.73596 * 120.07757 * 179.71926 * 11 10 9 13 13 C 1.37272 * 126.72528 * 180.24960 * 2 1 3 14 14 C 1.47197 * 128.58694 * 0.02562 * 13 2 1 15 15 O 1.21645 * 120.00194 * 270.15631 * 14 13 2 16 16 N 1.34773 * 119.99764 * 90.16194 * 14 13 2 17 17 C 1.36964 * 120.00091 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99743 * 22.75822 * 17 16 14 19 19 C 1.38988 * 120.00211 * 202.75449 * 17 16 14 20 20 N 1.31403 * 119.99770 * 7.22050 * 19 17 16 21 21 Si 1.86790 * 120.00099 * 187.22201 * 19 17 16 22 22 H 1.48499 * 109.47364 * 84.98120 * 21 19 17 23 23 H 1.48501 * 109.47448 * 204.98078 * 21 19 17 24 24 H 1.48501 * 109.47265 * 324.98259 * 21 19 17 25 25 C 1.46499 * 120.00081 * 359.97438 * 16 14 13 26 26 C 1.47208 * 109.47333 * 84.40114 * 25 16 14 27 27 N 4.94712 * 127.34933 * 231.37620 * 2 1 3 28 28 H 1.09004 * 109.47314 * 0.02968 * 1 2 3 29 29 H 1.09002 * 109.47037 * 120.02434 * 1 2 3 30 30 H 1.08994 * 109.47558 * 240.02365 * 1 2 3 31 31 H 1.07994 * 120.05401 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.91660 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.86930 * 179.97438 * 9 8 7 34 34 H 1.07999 * 119.94206 * 180.28162 * 10 9 8 35 35 H 0.96999 * 120.00072 * 179.97438 * 20 19 17 36 36 H 1.08998 * 109.47211 * 204.40037 * 25 16 14 37 37 H 1.09004 * 109.47123 * 324.39812 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3054 1.0701 0.0000 4 7 3.4794 0.7920 0.0005 5 6 3.6794 -0.5014 0.0004 6 6 4.9807 -1.2126 0.0003 7 6 5.0165 -2.6061 -0.0004 8 6 6.2302 -3.2625 -0.0009 9 6 7.4107 -2.5410 -0.0003 10 6 7.3826 -1.1585 -0.0049 11 6 6.1735 -0.4898 0.0014 12 17 6.1392 1.2458 0.0029 13 6 2.3279 -1.1002 -0.0048 14 6 1.9546 -2.5241 -0.0115 15 8 1.7973 -3.1166 1.0392 16 7 1.7874 -3.1713 -1.1818 17 6 1.4406 -4.4963 -1.1881 18 1 0.9514 -4.9306 -0.3287 19 6 1.7183 -5.2821 -2.3004 20 7 2.4372 -4.7944 -3.2863 21 14 1.0694 -7.0311 -2.3939 22 1 -0.3167 -7.0171 -2.9265 23 1 1.9370 -7.8337 -3.2930 24 1 1.0719 -7.6333 -1.0364 25 6 1.9765 -2.4576 -2.4471 26 6 3.4056 -2.4551 -2.8003 27 7 4.5083 -2.4548 -3.0725 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3634 -0.5134 0.8901 31 1 4.0960 -3.1708 -0.0013 32 1 6.2586 -4.3421 -0.0010 33 1 8.3581 -3.0596 -0.0003 34 1 8.3072 -0.6005 -0.0090 35 1 2.6313 -5.3429 -4.0625 36 1 1.4089 -2.9553 -3.2333 37 1 1.6266 -1.4308 -2.3409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000196252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:41 Heat of formation + Delta-G solvation = 93.263500 kcal Electronic energy + Delta-G solvation = -28419.010459 eV Core-core repulsion = 24384.729247 eV Total energy + Delta-G solvation = -4034.281212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.067 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.45181 -39.24218 -38.68513 -36.17631 -35.83131 -34.40891 -33.89172 -33.25110 -31.84502 -30.63093 -30.10351 -27.86134 -27.51593 -25.60859 -23.97416 -22.98032 -22.18857 -20.36221 -19.29839 -18.03448 -17.50512 -17.23093 -16.89546 -16.28563 -16.10371 -15.33134 -14.99772 -14.69389 -14.30544 -14.01412 -13.75125 -13.47598 -13.28634 -13.10033 -13.06571 -12.97725 -12.84134 -12.40651 -12.00635 -11.69920 -11.48924 -11.38023 -11.27729 -11.24317 -11.19284 -11.05572 -10.62507 -10.56029 -10.48708 -10.40562 -10.26311 -9.40930 -9.17992 -8.79714 -8.59213 -8.26230 -8.20792 -6.61674 -4.23259 0.94523 1.44719 1.72666 2.33375 2.60572 2.95718 3.11930 3.15635 3.22438 3.34183 3.67637 3.95419 3.97529 4.07682 4.14521 4.50535 4.70765 4.79350 5.00094 5.11537 5.16784 5.28795 5.40037 5.47466 5.56933 5.57783 5.61945 5.75144 5.79107 5.94383 6.02510 6.09897 6.19739 6.35195 6.52139 6.54848 6.68757 6.97423 7.30066 7.72249 8.10133 8.54445 8.77043 8.79885 8.99112 9.51721 10.41589 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005400 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.406133 B = 5183.583296 C = 6521.097864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.011 4.011 3 O 0.099 5.901 4 N -0.333 5.333 5 C 0.079 3.921 6 C -0.010 4.010 7 C -0.061 4.061 8 C -0.108 4.108 9 C -0.096 4.096 10 C -0.121 4.121 11 C -0.015 4.015 12 Cl -0.053 7.053 13 C -0.204 4.204 14 C 0.524 3.476 15 O -0.558 6.558 16 N -0.426 5.426 17 C -0.312 4.312 18 H 0.110 0.890 19 C 0.036 3.964 20 N -0.879 5.879 21 Si 0.935 3.065 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.268 1.268 25 C 0.223 3.777 26 C 0.243 3.757 27 N -0.461 5.461 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.277 0.723 36 H 0.137 0.863 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.278 7.225 2.321 7.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 O 0.033 5.967 4 N -0.036 5.036 5 C -0.080 4.080 6 C -0.012 4.012 7 C -0.081 4.081 8 C -0.126 4.126 9 C -0.115 4.115 10 C -0.139 4.139 11 C -0.043 4.043 12 Cl -0.024 7.024 13 C -0.211 4.211 14 C 0.312 3.688 15 O -0.440 6.440 16 N -0.145 5.145 17 C -0.439 4.439 18 H 0.128 0.872 19 C -0.168 4.168 20 N -0.518 5.518 21 Si 0.761 3.239 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.192 1.192 25 C 0.096 3.904 26 C -0.076 4.076 27 N -0.141 5.141 28 H 0.102 0.898 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.651 8.077 2.243 8.791 hybrid contribution -0.808 -1.520 -0.271 1.742 sum 1.843 6.557 1.972 7.091 Atomic orbital electron populations 1.20390 0.83292 1.04346 1.04917 1.24532 0.95930 0.85126 1.01802 1.84490 1.11330 1.33332 1.67581 1.74179 0.95099 1.15562 1.18770 1.22777 0.93048 0.88751 1.03450 1.17449 0.87453 0.92503 1.03762 1.21467 0.99997 0.91995 0.94598 1.21136 0.91787 1.00618 0.99028 1.21161 0.98602 0.93119 0.98644 1.20872 0.96017 0.94589 1.02458 1.20930 0.94072 0.85043 1.04227 1.98366 1.98595 1.08894 1.96574 1.22241 0.91381 0.96598 1.10896 1.16673 0.83659 0.83743 0.84770 1.90707 1.55071 1.67375 1.30889 1.43519 1.58699 1.10208 1.02116 1.19759 1.37008 0.83205 1.03919 0.87215 1.25399 0.95364 1.00419 0.95642 1.69717 1.35421 1.38002 1.08675 0.85779 0.78533 0.80874 0.78665 1.19934 1.20872 1.19248 1.18762 0.85582 0.95973 0.90116 1.29046 0.95041 0.90487 0.92997 1.80893 1.12909 1.11554 1.08736 0.89759 0.88714 0.88777 0.83782 0.85102 0.85117 0.84934 0.91256 0.84570 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.32 36.01 0.37 -0.43 16 2 C -0.01 -0.18 7.27 -34.66 -0.25 -0.43 16 3 O 0.10 1.63 11.05 18.61 0.21 1.84 16 4 N -0.33 -6.19 9.52 34.61 0.33 -5.86 16 5 C 0.08 1.56 7.18 -80.22 -0.58 0.99 16 6 C -0.01 -0.20 5.88 -104.87 -0.62 -0.81 16 7 C -0.06 -1.24 8.23 -39.25 -0.32 -1.56 16 8 C -0.11 -1.89 10.03 -39.63 -0.40 -2.28 16 9 C -0.10 -1.44 10.04 -39.52 -0.40 -1.83 16 10 C -0.12 -1.85 9.82 -39.59 -0.39 -2.24 16 11 C -0.01 -0.26 6.35 -39.15 -0.25 -0.51 16 12 Cl -0.05 -0.89 26.28 -51.86 -1.36 -2.25 16 13 C -0.20 -3.96 4.38 -102.69 -0.45 -4.41 16 14 C 0.52 11.56 4.74 -12.62 -0.06 11.50 16 15 O -0.56 -14.07 16.72 5.24 0.09 -13.98 16 16 N -0.43 -9.35 2.53 -119.23 -0.30 -9.66 16 17 C -0.31 -7.36 9.30 -14.98 -0.14 -7.50 16 18 H 0.11 2.70 7.39 -52.49 -0.39 2.31 16 19 C 0.04 0.82 5.17 -17.46 -0.09 0.73 16 20 N -0.88 -20.52 8.91 55.50 0.49 -20.02 16 21 Si 0.94 18.46 29.56 -169.99 -5.02 13.43 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.28 -5.71 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C 0.22 4.41 4.91 -6.83 -0.03 4.38 16 26 C 0.24 5.33 12.58 -20.76 -0.26 5.07 16 27 N -0.46 -10.72 17.99 42.15 0.76 -9.96 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.14 3.34 5.18 -52.49 -0.27 3.07 16 32 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.28 6.34 8.31 -40.82 -0.34 6.00 16 36 H 0.14 2.71 6.39 -51.93 -0.33 2.38 16 37 H 0.07 1.20 6.90 -51.93 -0.36 0.84 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -29.28 342.83 -6.53 -35.81 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -3.02 Total: 4.84 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -3.86 Total: 0.65 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: 1.28 Total: -45.50 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.29 Total: -12.15 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.36 Total: -2.25 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.28 -6.53 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000196252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.071 kcal (2) G-P(sol) polarization free energy of solvation -29.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds