Wall clock time and date at job start Tue Mar 31 2020 06:12:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33509 * 126.72697 * 2 1 4 4 N 1.20654 * 113.40217 * 179.97438 * 3 2 1 5 5 C 1.30874 * 112.11262 * 0.02562 * 4 3 2 6 6 C 1.48297 * 127.44675 * 179.97438 * 5 4 3 7 7 C 1.39392 * 120.13224 * 180.02562 * 6 5 4 8 8 C 1.37980 * 119.88279 * 179.97438 * 7 6 5 9 9 C 1.38360 * 120.15701 * 0.02562 * 8 7 6 10 10 C 1.38274 * 120.26642 * 359.72117 * 9 8 7 11 11 C 1.38170 * 120.11059 * 0.55296 * 10 9 8 12 12 Cl 1.73596 * 120.07757 * 179.71926 * 11 10 9 13 13 C 1.37272 * 126.72528 * 180.24960 * 2 1 3 14 14 C 1.47197 * 128.58694 * 0.02562 * 13 2 1 15 15 O 1.21645 * 120.00194 * 270.15631 * 14 13 2 16 16 N 1.34773 * 119.99764 * 90.16194 * 14 13 2 17 17 C 1.36964 * 120.00091 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99743 * 22.75822 * 17 16 14 19 19 C 1.38988 * 120.00211 * 202.75449 * 17 16 14 20 20 N 1.31403 * 119.99770 * 7.22050 * 19 17 16 21 21 Si 1.86790 * 120.00099 * 187.22201 * 19 17 16 22 22 H 1.48499 * 109.47364 * 84.98120 * 21 19 17 23 23 H 1.48501 * 109.47448 * 204.98078 * 21 19 17 24 24 H 1.48501 * 109.47265 * 324.98259 * 21 19 17 25 25 C 1.46499 * 120.00081 * 359.97438 * 16 14 13 26 26 C 1.47208 * 109.47333 * 84.40114 * 25 16 14 27 27 N 4.94712 * 127.34933 * 231.37620 * 2 1 3 28 28 H 1.09004 * 109.47314 * 0.02968 * 1 2 3 29 29 H 1.09002 * 109.47037 * 120.02434 * 1 2 3 30 30 H 1.08994 * 109.47558 * 240.02365 * 1 2 3 31 31 H 1.07994 * 120.05401 * 0.02562 * 7 6 5 32 32 H 1.07998 * 119.91660 * 179.97438 * 8 7 6 33 33 H 1.08001 * 119.86930 * 179.97438 * 9 8 7 34 34 H 1.07999 * 119.94206 * 180.28162 * 10 9 8 35 35 H 0.96999 * 120.00072 * 179.97438 * 20 19 17 36 36 H 1.08998 * 109.47211 * 204.40037 * 25 16 14 37 37 H 1.09004 * 109.47123 * 324.39812 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3054 1.0701 0.0000 4 7 3.4794 0.7920 0.0005 5 6 3.6794 -0.5014 0.0004 6 6 4.9807 -1.2126 0.0003 7 6 5.0165 -2.6061 -0.0004 8 6 6.2302 -3.2625 -0.0009 9 6 7.4107 -2.5410 -0.0003 10 6 7.3826 -1.1585 -0.0049 11 6 6.1735 -0.4898 0.0014 12 17 6.1392 1.2458 0.0029 13 6 2.3279 -1.1002 -0.0048 14 6 1.9546 -2.5241 -0.0115 15 8 1.7973 -3.1166 1.0392 16 7 1.7874 -3.1713 -1.1818 17 6 1.4406 -4.4963 -1.1881 18 1 0.9514 -4.9306 -0.3287 19 6 1.7183 -5.2821 -2.3004 20 7 2.4372 -4.7944 -3.2863 21 14 1.0694 -7.0311 -2.3939 22 1 -0.3167 -7.0171 -2.9265 23 1 1.9370 -7.8337 -3.2930 24 1 1.0719 -7.6333 -1.0364 25 6 1.9765 -2.4576 -2.4471 26 6 3.4056 -2.4551 -2.8003 27 7 4.5083 -2.4548 -3.0725 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5142 -0.8898 30 1 -0.3634 -0.5134 0.8901 31 1 4.0960 -3.1708 -0.0013 32 1 6.2586 -4.3421 -0.0010 33 1 8.3581 -3.0596 -0.0003 34 1 8.3072 -0.6005 -0.0090 35 1 2.6313 -5.3429 -4.0625 36 1 1.4089 -2.9553 -3.2333 37 1 1.6266 -1.4308 -2.3409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000196252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:40 Heat of formation + Delta-G solvation = 78.369298 kcal Electronic energy + Delta-G solvation = -28419.656320 eV Core-core repulsion = 24384.729247 eV Total energy + Delta-G solvation = -4034.927073 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 345.067 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.85480 -40.79726 -40.16157 -37.59401 -37.48795 -36.16004 -35.32388 -34.54990 -33.57926 -31.96375 -31.44550 -29.32733 -28.93111 -27.23245 -25.47658 -24.35323 -23.57924 -21.81480 -20.77984 -19.79348 -18.96295 -18.66434 -18.28809 -17.94253 -17.52783 -16.92114 -16.31731 -16.23400 -15.93515 -15.53995 -15.12079 -14.86114 -14.73010 -14.66901 -14.55712 -14.18481 -13.99722 -13.72239 -13.55091 -13.38380 -13.09726 -12.89358 -12.76295 -12.62536 -12.51700 -12.41147 -12.35191 -12.19099 -12.12988 -11.79497 -11.60776 -11.15152 -10.87049 -10.26203 -9.98497 -9.93965 -9.60537 -8.39205 -6.06895 -0.41465 0.09986 0.39634 1.00722 1.19662 1.33039 1.49563 1.57892 1.66385 1.93352 2.03837 2.29536 2.38481 2.59979 2.71585 2.99738 3.12087 3.19704 3.57320 3.74589 3.87355 3.90912 4.04019 4.15090 4.24690 4.36322 4.44531 4.48350 4.58321 4.71098 4.77102 4.87167 4.89673 5.04808 5.18840 5.20696 5.34441 5.44462 5.66347 5.96647 6.32684 7.00772 7.05668 7.18701 7.22999 7.77805 8.61709 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005400 C = 0.004293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.406133 B = 5183.583296 C = 6521.097864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.021 3.979 3 O 0.113 5.887 4 N -0.342 5.342 5 C 0.063 3.937 6 C -0.032 4.032 7 C -0.086 4.086 8 C -0.121 4.121 9 C -0.083 4.083 10 C -0.113 4.113 11 C -0.029 4.029 12 Cl -0.046 7.046 13 C -0.244 4.244 14 C 0.535 3.465 15 O -0.601 6.601 16 N -0.429 5.429 17 C -0.333 4.333 18 H 0.091 0.909 19 C 0.011 3.989 20 N -0.892 5.892 21 Si 0.992 3.008 22 H -0.259 1.259 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.226 3.774 26 C 0.250 3.750 27 N -0.486 5.486 28 H 0.123 0.877 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.137 0.863 33 H 0.174 0.826 34 H 0.168 0.832 35 H 0.276 0.724 36 H 0.137 0.863 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 8.257 1.807 8.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.043 4.043 3 O 0.046 5.954 4 N -0.044 5.044 5 C -0.095 4.095 6 C -0.033 4.033 7 C -0.106 4.106 8 C -0.139 4.139 9 C -0.101 4.101 10 C -0.132 4.132 11 C -0.057 4.057 12 Cl -0.017 7.017 13 C -0.251 4.251 14 C 0.323 3.677 15 O -0.487 6.487 16 N -0.147 5.147 17 C -0.460 4.460 18 H 0.109 0.891 19 C -0.192 4.192 20 N -0.530 5.530 21 Si 0.816 3.184 22 H -0.184 1.184 23 H -0.211 1.211 24 H -0.202 1.202 25 C 0.100 3.900 26 C -0.068 4.068 27 N -0.167 5.167 28 H 0.141 0.859 29 H 0.127 0.873 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.155 0.845 33 H 0.192 0.808 34 H 0.186 0.814 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.863 9.133 1.705 9.722 hybrid contribution -0.852 -1.791 -0.070 1.985 sum 2.011 7.341 1.636 7.786 Atomic orbital electron populations 1.20722 0.79677 1.07211 1.05578 1.25245 0.97428 0.83610 0.97967 1.84479 1.10913 1.33213 1.66818 1.74145 0.95989 1.14923 1.19298 1.22957 0.93397 0.89206 1.03979 1.17593 0.88394 0.92466 1.04883 1.21258 0.99636 0.92424 0.97293 1.21368 0.92045 1.01258 0.99240 1.21596 0.99197 0.93073 0.96220 1.21348 0.96425 0.94987 1.00396 1.21169 0.94365 0.85592 1.04566 1.98358 1.98606 1.08192 1.96555 1.21993 0.92366 0.95923 1.14848 1.16862 0.82147 0.84644 0.84004 1.90656 1.56842 1.68824 1.32368 1.43560 1.58380 1.09913 1.02866 1.19701 1.38037 0.84430 1.03823 0.89088 1.25969 0.95132 1.03061 0.95004 1.69807 1.35660 1.38803 1.08766 0.84942 0.78595 0.77000 0.77875 1.18379 1.21138 1.20186 1.18930 0.84500 0.97486 0.89117 1.29429 0.95441 0.89705 0.92268 1.80854 1.13666 1.12474 1.09677 0.85856 0.87285 0.88556 0.87393 0.84520 0.80815 0.81438 0.91367 0.84526 0.87848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.32 71.24 0.74 -0.72 16 2 C 0.02 0.63 7.27 25.46 0.18 0.81 16 3 O 0.11 3.53 11.05 76.85 0.85 4.38 16 4 N -0.34 -12.44 9.52 -44.98 -0.43 -12.87 16 5 C 0.06 2.52 7.18 44.51 0.32 2.84 16 6 C -0.03 -1.27 5.88 -20.03 -0.12 -1.39 16 7 C -0.09 -3.63 8.23 22.49 0.19 -3.44 16 8 C -0.12 -4.25 10.03 22.24 0.22 -4.03 16 9 C -0.08 -2.28 10.04 22.31 0.22 -2.05 16 10 C -0.11 -3.22 9.82 22.26 0.22 -3.00 16 11 C -0.03 -1.01 6.35 22.55 0.14 -0.86 16 12 Cl -0.05 -1.49 26.28 -2.72 -0.07 -1.56 16 13 C -0.24 -9.53 4.38 -18.61 -0.08 -9.61 16 14 C 0.53 24.29 4.74 86.60 0.41 24.70 16 15 O -0.60 -31.81 16.72 -4.17 -0.07 -31.88 16 16 N -0.43 -19.26 2.53 -649.37 -1.64 -20.90 16 17 C -0.33 -16.14 9.30 84.07 0.78 -15.36 16 18 H 0.09 4.69 7.39 -2.91 -0.02 4.67 16 19 C 0.01 0.50 5.17 84.94 0.44 0.94 16 20 N -0.89 -41.82 8.91 21.67 0.19 -41.62 16 21 Si 0.99 37.98 29.56 68.60 2.03 40.01 16 22 H -0.26 -9.29 7.11 99.48 0.71 -8.59 16 23 H -0.29 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 25 C 0.23 8.96 4.91 84.58 0.42 9.38 16 26 C 0.25 11.05 12.58 89.45 1.13 12.17 16 27 N -0.49 -22.82 17.99 20.01 0.36 -22.46 16 28 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.11 5.32 5.18 -2.91 -0.02 5.30 16 32 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 33 H 0.17 3.25 8.06 -2.91 -0.02 3.23 16 34 H 0.17 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 36 H 0.14 5.41 6.39 -2.39 -0.02 5.40 16 37 H 0.10 3.38 6.90 -2.38 -0.02 3.36 16 Total: -1.00 -66.25 342.83 7.58 -58.67 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 1.15 Total: 17.87 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 5.21 Total: 10.36 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -1.52 Total: -97.85 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: 0.78 Total: -27.51 kcal Atomic # 14 Polarization: 37.98 SS G_CDS: 2.03 Total: 40.01 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -0.07 Total: -1.56 kcal Total: -66.25 7.58 -58.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000196252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.044 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds