Wall clock time and date at job start Tue Mar 31 2020 06:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34479 * 125.36255 * 2 1 4 4 C 1.46722 * 106.51661 * 179.97438 * 3 2 1 5 5 C 1.46324 * 127.06171 * 180.02562 * 4 3 2 6 6 N 1.31012 * 120.00142 * 179.97438 * 5 4 3 7 7 N 1.40105 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99964 * 180.02562 * 7 6 5 9 9 O 1.22068 * 119.99711 * 359.97438 * 8 7 6 10 10 C 1.40087 * 119.99943 * 180.02562 * 8 7 6 11 11 H 1.08000 * 119.99710 * 353.68785 * 10 8 7 12 12 C 1.40121 * 120.00161 * 173.69384 * 10 8 7 13 13 N 1.30658 * 119.99633 * 6.29179 * 12 10 8 14 14 Si 1.86793 * 120.00100 * 186.29986 * 12 10 8 15 15 H 1.48492 * 109.47561 * 94.98067 * 14 12 10 16 16 H 1.48501 * 109.46843 * 214.98445 * 14 12 10 17 17 H 1.48503 * 109.47151 * 334.97500 * 14 12 10 18 18 C 1.39203 * 105.88041 * 359.75110 * 4 3 2 19 19 C 1.50701 * 125.99740 * 180.28468 * 18 4 3 20 20 N 1.34824 * 107.99329 * 0.40413 * 18 4 3 21 21 C 1.40072 * 124.83085 * 179.83812 * 20 18 4 22 22 C 1.38901 * 120.06053 * 244.72344 * 21 20 18 23 23 C 1.38096 * 119.95094 * 180.02562 * 22 21 20 24 24 C 1.38286 * 120.08324 * 0.28213 * 23 22 21 25 25 C 1.38390 * 120.12614 * 359.44037 * 24 23 22 26 26 Cl 1.73602 * 119.97416 * 180.30258 * 25 24 23 27 27 C 1.38236 * 120.04282 * 0.55878 * 25 24 23 28 28 H 1.08997 * 109.46727 * 270.02439 * 1 2 3 29 29 H 1.08995 * 109.47184 * 30.02359 * 1 2 3 30 30 H 1.08999 * 109.47230 * 150.02845 * 1 2 3 31 31 H 1.08010 * 126.74326 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.99403 * 359.97438 * 5 4 3 33 33 H 0.96995 * 119.99981 * 359.97438 * 7 6 5 34 34 H 0.96999 * 119.99392 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47153 * 270.13695 * 19 18 4 36 36 H 1.08994 * 109.47820 * 30.14305 * 19 18 4 37 37 H 1.09002 * 109.46564 * 150.14559 * 19 18 4 38 38 H 1.08003 * 120.02707 * 0.05155 * 22 21 20 39 39 H 1.08000 * 119.95551 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.93508 * 179.70220 * 24 23 22 41 41 H 1.08001 * 120.04066 * 179.69881 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6739 0.6227 0.0006 5 6 4.8856 1.4429 0.0014 6 7 6.0641 0.8705 0.0024 7 7 7.2243 1.6559 0.0037 8 6 8.4367 1.0671 0.0042 9 8 8.5237 -0.1505 0.0040 10 6 9.5967 1.8523 0.0060 11 1 9.5228 2.9250 -0.0959 12 6 10.8529 1.2462 0.1398 13 7 10.9530 -0.0566 0.1393 14 14 12.3844 2.3005 0.3192 15 1 12.7049 2.4671 1.7595 16 1 13.5231 1.6402 -0.3682 17 1 12.1428 3.6324 -0.2915 18 6 3.6019 -0.7674 0.0068 19 6 4.7736 -1.7150 0.0158 20 7 2.2997 -1.1170 0.0006 21 6 1.8252 -2.4349 0.0008 22 6 1.1123 -2.9178 -1.0891 23 6 0.6451 -4.2174 -1.0864 24 6 0.8810 -5.0365 0.0025 25 6 1.5959 -4.5606 1.0877 26 17 1.8966 -5.5949 2.4492 27 6 2.0661 -3.2607 1.0905 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9534 2.1245 -0.0004 32 1 4.8084 2.5202 0.0011 33 1 7.1551 2.6234 0.0034 34 1 11.8225 -0.4762 0.2323 35 1 5.0617 -1.9463 -1.0097 36 1 5.6130 -1.2502 0.5329 37 1 4.4936 -2.6341 0.5305 38 1 0.9238 -2.2777 -1.9383 39 1 0.0904 -4.5928 -1.9336 40 1 0.5104 -6.0510 0.0041 41 1 2.6198 -2.8878 1.9395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000241625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:00 Heat of formation + Delta-G solvation = 70.077377 kcal Electronic energy + Delta-G solvation = -26184.384648 eV Core-core repulsion = 22284.931106 eV Total energy + Delta-G solvation = -3899.453543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58707 -39.18130 -37.45000 -36.80929 -35.14271 -33.22797 -32.76277 -32.35540 -31.19753 -30.43743 -28.94743 -28.68569 -26.61019 -24.29960 -23.50969 -23.18759 -21.74279 -20.06746 -19.87530 -18.72276 -17.39264 -16.97637 -16.56706 -16.26857 -15.61643 -15.45265 -15.22104 -14.54647 -14.27323 -14.05927 -13.98691 -13.51895 -13.26206 -13.18690 -12.96798 -12.89723 -12.59119 -12.34503 -12.20751 -12.12085 -11.90533 -11.81499 -11.56301 -11.42472 -11.30994 -11.27971 -11.15825 -10.81868 -10.55851 -10.31486 -9.52867 -9.23976 -9.16470 -8.97750 -8.53469 -7.94164 -7.65693 -6.85284 -6.34329 -4.87787 0.57817 0.72437 1.68180 2.02962 2.44870 2.80311 3.07507 3.09834 3.14398 3.18377 3.76086 3.88090 4.20363 4.36577 4.51797 4.52287 4.62251 4.67636 4.87857 4.99645 5.12917 5.23474 5.35193 5.35607 5.43134 5.64056 5.67975 5.72233 5.79716 5.83513 5.85961 5.88095 6.04977 6.13273 6.15931 6.22474 6.52985 6.73505 6.89645 7.15071 7.26787 7.33998 7.55085 7.96737 8.09070 8.82531 8.89673 9.43973 10.45224 10.76105 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.002382 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.974638 B =11752.246342 C =13244.822818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.004 3.996 3 C -0.160 4.160 4 C -0.118 4.118 5 C 0.066 3.934 6 N -0.209 5.209 7 N -0.596 5.596 8 C 0.562 3.438 9 O -0.558 6.558 10 C -0.539 4.539 11 H 0.069 0.931 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.072 3.928 19 C -0.088 4.088 20 N -0.405 5.405 21 C 0.141 3.859 22 C -0.108 4.108 23 C -0.095 4.095 24 C -0.108 4.108 25 C -0.023 4.023 26 Cl -0.060 7.060 27 C -0.103 4.103 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.366 0.634 34 H 0.273 0.727 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.052 0.948 38 H 0.136 0.864 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.863 -5.663 -0.347 24.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.186 4.186 4 C -0.126 4.126 5 C -0.143 4.143 6 N -0.018 5.018 7 N -0.341 5.341 8 C 0.370 3.630 9 O -0.439 6.439 10 C -0.575 4.575 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.372 5.372 14 Si 0.739 3.261 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.042 4.042 19 C -0.146 4.146 20 N -0.081 5.081 21 C 0.051 3.949 22 C -0.128 4.128 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.050 4.050 26 Cl -0.031 7.031 27 C -0.123 4.123 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.079 0.921 31 H 0.162 0.838 32 H 0.121 0.879 33 H 0.201 0.799 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.131 0.869 37 H 0.070 0.930 38 H 0.154 0.846 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -23.051 -7.859 -0.219 24.354 hybrid contribution 0.469 1.904 0.227 1.974 sum -22.581 -5.954 0.008 23.353 Atomic orbital electron populations 1.20310 0.88348 1.02877 1.02413 1.20158 0.93083 0.84764 1.12088 1.21655 0.90822 0.97086 1.09044 1.18982 0.91025 0.89915 1.12711 1.23156 0.89635 0.96002 1.05524 1.74955 0.93808 1.25789 1.07229 1.47947 1.02848 1.06392 1.76927 1.16544 0.79583 0.88643 0.78200 1.90727 1.84855 1.14122 1.54154 1.19619 0.90252 0.94824 1.52853 0.91238 1.25743 1.00240 0.94906 0.92549 1.70056 1.25276 1.09949 1.31903 0.86239 0.80340 0.80511 0.79032 1.19546 1.20194 1.18661 1.21234 0.83187 0.94605 1.05135 1.20557 0.94666 0.95990 1.03353 1.40833 1.05629 1.02604 1.59034 1.17504 0.98907 0.84290 0.94228 1.21355 0.98031 0.96266 0.97115 1.21020 0.99411 0.92775 0.98156 1.21179 0.98255 1.00947 0.92263 1.20713 1.01492 0.91805 0.91002 1.98398 1.94749 1.66531 1.43391 1.21159 1.00405 0.92288 0.98448 0.91422 0.90216 0.92058 0.83770 0.87947 0.79909 0.91641 0.90950 0.86894 0.92953 0.84575 0.84132 0.84339 0.84032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.03 36.01 0.36 -0.34 16 2 C 0.00 0.05 6.76 -81.62 -0.55 -0.50 16 3 C -0.16 -2.17 10.99 -37.49 -0.41 -2.58 16 4 C -0.12 -2.00 6.34 -102.86 -0.65 -2.65 16 5 C 0.07 1.23 11.05 -14.65 -0.16 1.07 16 6 N -0.21 -4.80 8.65 32.08 0.28 -4.52 16 7 N -0.60 -14.63 6.26 28.81 0.18 -14.45 16 8 C 0.56 16.56 7.63 -15.57 -0.12 16.44 16 9 O -0.56 -18.68 15.21 4.86 0.07 -18.60 16 10 C -0.54 -15.15 9.22 -38.18 -0.35 -15.50 16 11 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 12 C 0.09 2.45 5.49 -17.34 -0.10 2.35 16 13 N -0.74 -22.01 11.72 55.55 0.65 -21.35 16 14 Si 0.91 19.66 29.56 -169.99 -5.03 14.63 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 17 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 18 C 0.07 1.20 6.88 -80.92 -0.56 0.64 16 19 C -0.09 -1.58 9.48 36.01 0.34 -1.23 16 20 N -0.40 -5.53 2.74 -51.89 -0.14 -5.67 16 21 C 0.14 1.64 4.88 -83.63 -0.41 1.23 16 22 C -0.11 -1.00 8.63 -39.39 -0.34 -1.34 16 23 C -0.09 -0.68 10.04 -39.62 -0.40 -1.08 16 24 C -0.11 -0.84 9.83 -39.51 -0.39 -1.23 16 25 C -0.02 -0.22 6.32 -39.53 -0.25 -0.47 16 26 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 27 C -0.10 -1.17 8.39 -39.36 -0.33 -1.50 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 6.67 -51.93 -0.35 0.13 16 31 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.10 1.63 8.04 -52.49 -0.42 1.21 16 33 H 0.37 7.67 8.62 -182.60 -1.57 6.09 16 34 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.11 2.43 6.35 -51.93 -0.33 2.10 16 37 H 0.05 0.82 6.66 -51.93 -0.35 0.47 16 38 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.14 0.61 8.06 -52.49 -0.42 0.18 16 40 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 41 H 0.14 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 373.53 15.07 5.63 5.63 Total: -1.00 -35.65 373.53 -10.12 -45.77 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.95 Total: 7.33 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -4.31 Total: -6.68 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: 0.97 Total: -46.00 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.07 Total: -18.60 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.65 -10.12 -45.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000241625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.846 kcal (2) G-P(sol) polarization free energy of solvation -35.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds