Wall clock time and date at job start Tue Mar 31 2020 06:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34479 * 125.36255 * 2 1 4 4 C 1.46722 * 106.51661 * 179.97438 * 3 2 1 5 5 C 1.46324 * 127.06171 * 180.02562 * 4 3 2 6 6 N 1.31012 * 120.00142 * 179.97438 * 5 4 3 7 7 N 1.40105 * 119.99940 * 180.02562 * 6 5 4 8 8 C 1.34776 * 119.99964 * 180.02562 * 7 6 5 9 9 O 1.22068 * 119.99711 * 359.97438 * 8 7 6 10 10 C 1.40087 * 119.99943 * 180.02562 * 8 7 6 11 11 H 1.08000 * 119.99710 * 353.68785 * 10 8 7 12 12 C 1.40121 * 120.00161 * 173.69384 * 10 8 7 13 13 N 1.30658 * 119.99633 * 6.29179 * 12 10 8 14 14 Si 1.86793 * 120.00100 * 186.29986 * 12 10 8 15 15 H 1.48492 * 109.47561 * 94.98067 * 14 12 10 16 16 H 1.48501 * 109.46843 * 214.98445 * 14 12 10 17 17 H 1.48503 * 109.47151 * 334.97500 * 14 12 10 18 18 C 1.39203 * 105.88041 * 359.75110 * 4 3 2 19 19 C 1.50701 * 125.99740 * 180.28468 * 18 4 3 20 20 N 1.34824 * 107.99329 * 0.40413 * 18 4 3 21 21 C 1.40072 * 124.83085 * 179.83812 * 20 18 4 22 22 C 1.38901 * 120.06053 * 244.72344 * 21 20 18 23 23 C 1.38096 * 119.95094 * 180.02562 * 22 21 20 24 24 C 1.38286 * 120.08324 * 0.28213 * 23 22 21 25 25 C 1.38390 * 120.12614 * 359.44037 * 24 23 22 26 26 Cl 1.73602 * 119.97416 * 180.30258 * 25 24 23 27 27 C 1.38236 * 120.04282 * 0.55878 * 25 24 23 28 28 H 1.08997 * 109.46727 * 270.02439 * 1 2 3 29 29 H 1.08995 * 109.47184 * 30.02359 * 1 2 3 30 30 H 1.08999 * 109.47230 * 150.02845 * 1 2 3 31 31 H 1.08010 * 126.74326 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.99403 * 359.97438 * 5 4 3 33 33 H 0.96995 * 119.99981 * 359.97438 * 7 6 5 34 34 H 0.96999 * 119.99392 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47153 * 270.13695 * 19 18 4 36 36 H 1.08994 * 109.47820 * 30.14305 * 19 18 4 37 37 H 1.09002 * 109.46564 * 150.14559 * 19 18 4 38 38 H 1.08003 * 120.02707 * 0.05155 * 22 21 20 39 39 H 1.08000 * 119.95551 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.93508 * 179.70220 * 24 23 22 41 41 H 1.08001 * 120.04066 * 179.69881 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6739 0.6227 0.0006 5 6 4.8856 1.4429 0.0014 6 7 6.0641 0.8705 0.0024 7 7 7.2243 1.6559 0.0037 8 6 8.4367 1.0671 0.0042 9 8 8.5237 -0.1505 0.0040 10 6 9.5967 1.8523 0.0060 11 1 9.5228 2.9250 -0.0959 12 6 10.8529 1.2462 0.1398 13 7 10.9530 -0.0566 0.1393 14 14 12.3844 2.3005 0.3192 15 1 12.7049 2.4671 1.7595 16 1 13.5231 1.6402 -0.3682 17 1 12.1428 3.6324 -0.2915 18 6 3.6019 -0.7674 0.0068 19 6 4.7736 -1.7150 0.0158 20 7 2.2997 -1.1170 0.0006 21 6 1.8252 -2.4349 0.0008 22 6 1.1123 -2.9178 -1.0891 23 6 0.6451 -4.2174 -1.0864 24 6 0.8810 -5.0365 0.0025 25 6 1.5959 -4.5606 1.0877 26 17 1.8966 -5.5949 2.4492 27 6 2.0661 -3.2607 1.0905 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.9534 2.1245 -0.0004 32 1 4.8084 2.5202 0.0011 33 1 7.1551 2.6234 0.0034 34 1 11.8225 -0.4762 0.2323 35 1 5.0617 -1.9463 -1.0097 36 1 5.6130 -1.2502 0.5329 37 1 4.4936 -2.6341 0.5305 38 1 0.9238 -2.2777 -1.9383 39 1 0.0904 -4.5928 -1.9336 40 1 0.5104 -6.0510 0.0041 41 1 2.6198 -2.8878 1.9395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000241625.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:59 Heat of formation + Delta-G solvation = 48.306213 kcal Electronic energy + Delta-G solvation = -26185.328717 eV Core-core repulsion = 22284.931106 eV Total energy + Delta-G solvation = -3900.397611 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63484 -39.99796 -39.47638 -37.58781 -36.90895 -34.74788 -34.19461 -33.81934 -32.05887 -31.89475 -30.07303 -29.88261 -28.52550 -25.61990 -24.52606 -23.92436 -23.04095 -21.83422 -21.06268 -20.16379 -18.96815 -18.25834 -17.62450 -17.42969 -17.11398 -17.04981 -16.09414 -15.87426 -15.52436 -15.10968 -15.01095 -14.80647 -14.67704 -14.45275 -14.35694 -14.11427 -13.92564 -13.40395 -13.28617 -13.23743 -13.13098 -13.02687 -12.92198 -12.69995 -12.65541 -12.59003 -12.39696 -12.31835 -12.04408 -12.00251 -10.99362 -10.76006 -10.43156 -10.04732 -9.91755 -9.83539 -9.14668 -8.45240 -8.41120 -7.06061 -0.18400 -0.00927 0.59332 0.94464 1.36851 1.38830 1.43068 1.57636 1.78699 2.14422 2.27428 2.37601 2.44919 2.54885 3.66401 3.66753 3.69521 3.88012 3.91684 3.93473 4.04176 4.18274 4.21748 4.36565 4.48281 4.59998 4.62187 4.69109 4.71808 4.81438 4.94027 4.99430 5.07123 5.12810 5.15253 5.17592 5.19603 5.38134 5.43183 5.54292 5.86372 5.94624 6.09846 6.16167 6.48113 6.70105 7.07590 7.54928 8.44370 8.65251 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.013669 B = 0.002382 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.974638 B =11752.246342 C =13244.822818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.016 3.984 3 C -0.163 4.163 4 C -0.155 4.155 5 C 0.106 3.894 6 N -0.273 5.273 7 N -0.601 5.601 8 C 0.547 3.453 9 O -0.617 6.617 10 C -0.564 4.564 11 H 0.092 0.908 12 C 0.030 3.970 13 N -0.800 5.800 14 Si 1.009 2.991 15 H -0.261 1.261 16 H -0.268 1.268 17 H -0.245 1.245 18 C 0.059 3.941 19 C -0.076 4.076 20 N -0.398 5.398 21 C 0.112 3.888 22 C -0.106 4.106 23 C -0.080 4.080 24 C -0.098 4.098 25 C -0.032 4.032 26 Cl -0.064 7.064 27 C -0.119 4.119 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.174 0.826 32 H 0.133 0.867 33 H 0.380 0.620 34 H 0.280 0.720 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.148 0.852 39 H 0.180 0.820 40 H 0.166 0.834 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.707 -4.739 -1.232 27.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 C -0.187 4.187 4 C -0.164 4.164 5 C -0.103 4.103 6 N -0.081 5.081 7 N -0.346 5.346 8 C 0.357 3.643 9 O -0.503 6.503 10 C -0.600 4.600 11 H 0.110 0.890 12 C -0.188 4.188 13 N -0.428 5.428 14 Si 0.827 3.173 15 H -0.185 1.185 16 H -0.193 1.193 17 H -0.168 1.168 18 C -0.057 4.057 19 C -0.134 4.134 20 N -0.073 5.073 21 C 0.023 3.977 22 C -0.125 4.125 23 C -0.098 4.098 24 C -0.117 4.117 25 C -0.059 4.059 26 Cl -0.035 7.035 27 C -0.139 4.139 28 H 0.095 0.905 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.191 0.809 32 H 0.150 0.850 33 H 0.217 0.783 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.166 0.834 39 H 0.197 0.803 40 H 0.183 0.817 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -25.972 -6.901 -1.104 26.895 hybrid contribution 0.972 1.501 0.492 1.855 sum -24.999 -5.399 -0.612 25.583 Atomic orbital electron populations 1.20461 0.85016 1.04634 1.03543 1.20900 0.94986 0.83848 1.09273 1.21965 0.88738 0.98947 1.09099 1.19271 0.91969 0.90270 1.14922 1.23806 0.89078 0.97892 0.99537 1.75116 0.94343 1.26233 1.12417 1.47277 1.02747 1.06909 1.77638 1.16951 0.81401 0.88190 0.77771 1.90664 1.86268 1.16358 1.57031 1.20162 0.90777 0.95935 1.53163 0.88977 1.27128 1.04337 0.96341 0.91012 1.70220 1.26862 1.12761 1.32942 0.84854 0.74466 0.78547 0.79470 1.18522 1.19290 1.16788 1.21040 0.84260 0.94495 1.05907 1.20261 0.94322 0.96723 1.02060 1.40953 1.04592 1.04120 1.57678 1.17744 1.00815 0.83567 0.95588 1.21558 0.97215 0.97370 0.96381 1.21453 0.98121 0.91487 0.98751 1.21567 0.96641 1.02190 0.91284 1.20844 1.02126 0.91253 0.91707 1.98396 1.94862 1.66419 1.43874 1.21056 1.01294 0.93284 0.98281 0.90495 0.87865 0.90880 0.80855 0.84991 0.78298 0.90943 0.92235 0.90954 0.91613 0.83380 0.80250 0.81678 0.86001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 10.03 71.24 0.71 -0.34 16 2 C 0.02 0.35 6.76 40.90 0.28 0.63 16 3 C -0.16 -4.07 10.99 23.63 0.26 -3.81 16 4 C -0.16 -5.28 6.34 -18.72 -0.12 -5.40 16 5 C 0.11 4.02 11.05 86.92 0.96 4.98 16 6 N -0.27 -13.34 8.65 -52.41 -0.45 -13.80 16 7 N -0.60 -31.12 6.26 -180.84 -1.13 -32.25 16 8 C 0.55 34.21 7.63 84.69 0.65 34.85 16 9 O -0.62 -44.42 15.21 -5.54 -0.08 -44.51 16 10 C -0.56 -32.78 9.22 23.18 0.21 -32.57 16 11 H 0.09 4.72 7.86 -2.91 -0.02 4.69 16 12 C 0.03 1.70 5.49 85.32 0.47 2.17 16 13 N -0.80 -49.48 11.72 21.85 0.26 -49.22 16 14 Si 1.01 40.61 29.56 68.60 2.03 42.63 16 15 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 16 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 17 H -0.24 -9.06 7.11 99.48 0.71 -8.36 16 18 C 0.06 2.01 6.88 42.33 0.29 2.30 16 19 C -0.08 -2.96 9.48 71.24 0.67 -2.28 16 20 N -0.40 -10.64 2.74 -318.08 -0.87 -11.51 16 21 C 0.11 2.50 4.88 38.12 0.19 2.68 16 22 C -0.11 -1.66 8.63 22.39 0.19 -1.46 16 23 C -0.08 -0.83 10.04 22.25 0.22 -0.61 16 24 C -0.10 -1.23 9.83 22.32 0.22 -1.01 16 25 C -0.03 -0.59 6.32 22.31 0.14 -0.45 16 26 Cl -0.06 -1.22 28.95 -2.72 -0.08 -1.30 16 27 C -0.12 -2.70 8.39 22.41 0.19 -2.51 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.83 6.67 -2.39 -0.02 0.82 16 31 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 32 H 0.13 4.08 8.04 -2.91 -0.02 4.06 16 33 H 0.38 16.51 8.62 -213.32 -1.84 14.68 16 34 H 0.28 15.47 8.29 -92.71 -0.77 14.70 16 35 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 3.46 6.35 -2.39 -0.02 3.44 16 37 H 0.07 2.26 6.66 -2.39 -0.02 2.24 16 38 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.18 0.54 8.06 -2.91 -0.02 0.51 16 40 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 41 H 0.12 3.15 8.04 -2.91 -0.02 3.12 16 Total: -1.00 -85.75 373.53 4.45 -81.31 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.75 Total: 31.48 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 5.54 Total: -2.83 kcal Atomic # 7 Polarization: -104.58 SS G_CDS: -2.20 Total: -106.78 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.08 Total: -44.51 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -0.08 Total: -1.30 kcal Total: -85.75 4.45 -81.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000241625.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.614 kcal (2) G-P(sol) polarization free energy of solvation -85.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds