Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38167 * 119.97855 * 2 1 4 4 C 1.38700 * 119.95409 * 179.97438 * 3 2 1 5 5 O 1.35926 * 120.03615 * 180.02562 * 4 3 2 6 6 C 1.42902 * 116.99691 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47090 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00153 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99802 * 179.97438 * 7 6 5 10 10 C 1.39236 * 119.99479 * 175.70944 * 9 7 6 11 11 C 1.39482 * 119.83240 * 215.01267 * 10 9 7 12 12 C 1.36378 * 120.17036 * 179.76117 * 11 10 9 13 13 C 1.40865 * 119.82474 * 0.51768 * 12 11 10 14 14 C 1.41157 * 120.16069 * 179.71729 * 13 12 11 15 15 H 1.08009 * 119.99678 * 214.80397 * 14 13 12 16 16 C 1.39899 * 120.00068 * 34.80438 * 14 13 12 17 17 N 1.30869 * 120.00182 * 355.55467 * 16 14 13 18 18 Si 1.86809 * 119.99933 * 175.56041 * 16 14 13 19 19 H 1.48504 * 109.46995 * 89.99760 * 18 16 14 20 20 H 1.48497 * 109.47102 * 209.99811 * 18 16 14 21 21 H 1.48498 * 109.46933 * 329.99635 * 18 16 14 22 22 C 1.40869 * 119.67595 * 359.74120 * 13 12 11 23 23 C 1.36376 * 119.82466 * 359.97438 * 22 13 12 24 24 C 1.38733 * 119.92046 * 0.02562 * 4 3 2 25 25 C 1.38132 * 119.95744 * 359.97426 * 24 4 3 26 26 C 1.38343 * 119.97785 * 179.97438 * 2 1 3 27 27 Cl 1.73593 * 119.96045 * 359.72678 * 26 2 1 28 28 H 1.08999 * 109.46879 * 270.01904 * 1 2 3 29 29 H 1.08998 * 109.47108 * 30.02007 * 1 2 3 30 30 H 1.09007 * 109.47198 * 150.02293 * 1 2 3 31 31 H 1.08000 * 120.02064 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.47558 * 300.00356 * 6 5 4 33 33 H 1.09004 * 109.47030 * 60.00714 * 6 5 4 34 34 H 0.96996 * 119.99850 * 355.71251 * 9 7 6 35 35 H 1.08003 * 119.91373 * 0.03012 * 11 10 9 36 36 H 1.08003 * 120.08631 * 180.25308 * 12 11 10 37 37 H 0.96998 * 120.00361 * 180.02562 * 17 16 14 38 38 H 1.07995 * 120.08796 * 179.97438 * 22 13 12 39 39 H 1.08004 * 119.91470 * 179.97438 * 23 22 13 40 40 H 1.08002 * 120.02642 * 179.97438 * 24 4 3 41 41 H 1.07991 * 119.97997 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1968 0.0000 4 6 3.5844 1.1962 0.0005 5 8 4.2652 2.3727 0.0011 6 6 5.6922 2.2963 0.0022 7 6 6.2698 3.6883 0.0020 8 8 5.5321 4.6509 0.0015 9 7 7.6062 3.8633 0.0034 10 6 8.1402 5.1460 -0.0870 11 6 9.3291 5.3549 -0.7859 12 6 9.8558 6.6092 -0.8829 13 6 9.2017 7.6934 -0.2657 14 6 9.7437 8.9935 -0.3565 15 1 9.6470 9.6781 0.4733 16 6 10.4061 9.3954 -1.5214 17 7 10.5998 8.5397 -2.4924 18 14 11.0144 11.1536 -1.6907 19 1 12.4004 11.2505 -1.1662 20 1 10.9983 11.5472 -3.1224 21 1 10.1281 12.0605 -0.9179 22 6 8.0042 7.4736 0.4431 23 6 7.4867 6.2146 0.5264 24 6 4.2759 -0.0065 0.0005 25 6 3.5821 -1.2010 0.0005 26 6 2.1982 -1.1984 0.0005 27 17 1.3287 -2.7008 0.0084 28 1 -0.3633 0.0003 1.0277 29 1 -0.3633 0.8898 -0.5141 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6574 2.1321 -0.0004 32 1 6.0269 1.7638 0.8923 33 1 6.0283 1.7639 -0.8877 34 1 8.1957 3.0958 0.0674 35 1 9.8315 4.5220 -1.2551 36 1 10.7742 6.7700 -1.4279 37 1 11.0595 8.8182 -3.2999 38 1 7.4974 8.2999 0.9191 39 1 6.5689 6.0444 1.0698 40 1 5.3559 -0.0090 0.0005 41 1 4.1200 -2.1374 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000269651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -49.709308 kcal Electronic energy + Delta-G solvation = -25411.110442 eV Core-core repulsion = 21474.169808 eV Total energy + Delta-G solvation = -3936.940634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.092 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66744 -40.90611 -39.29293 -38.61125 -37.15539 -36.18991 -34.77208 -33.65180 -31.84231 -31.47245 -30.83756 -29.16119 -27.93616 -26.54199 -23.76026 -23.61326 -22.89900 -22.19379 -21.23462 -19.32635 -19.06523 -18.69411 -17.72800 -17.46410 -17.41827 -17.02511 -16.95557 -15.92127 -15.63727 -15.48453 -15.31183 -15.02928 -14.71340 -14.51599 -14.37923 -14.02281 -13.90900 -13.61875 -13.34956 -13.25935 -13.23749 -13.00838 -12.93532 -12.82387 -12.71281 -12.49576 -12.25300 -11.80671 -11.64634 -11.63913 -11.40826 -11.23131 -10.84398 -10.62704 -9.92503 -9.48071 -9.16870 -8.76382 -8.51805 -6.34623 0.14373 0.19783 0.75086 1.12418 1.18907 1.39507 1.42229 1.51372 1.53105 1.73221 2.23665 2.53635 2.67235 2.79939 3.53619 3.66728 3.73593 3.78631 3.94735 4.07919 4.10488 4.28116 4.31860 4.39487 4.50984 4.62268 4.74642 4.85811 4.92050 4.95667 5.11431 5.12968 5.14739 5.21594 5.30676 5.31792 5.40945 5.53782 5.68315 5.88040 5.99365 6.11294 6.24932 6.37939 6.64125 6.67735 6.95613 6.98042 7.30770 8.40888 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.037177 B = 0.001605 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.968482 B =17436.632139 C =17789.951261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.040 4.040 3 C -0.158 4.158 4 C 0.125 3.875 5 O -0.317 6.317 6 C 0.050 3.950 7 C 0.496 3.504 8 O -0.564 6.564 9 N -0.634 5.634 10 C 0.019 3.981 11 C -0.114 4.114 12 C -0.159 4.159 13 C 0.067 3.933 14 C -0.498 4.498 15 H 0.072 0.928 16 C 0.028 3.972 17 N -0.840 5.840 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.269 1.269 21 H -0.264 1.264 22 C -0.222 4.222 23 C -0.098 4.098 24 C -0.201 4.201 25 C -0.064 4.064 26 C -0.088 4.088 27 Cl -0.067 7.067 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.424 0.576 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.285 0.715 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.167 0.833 41 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.291 -23.009 3.029 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.041 4.041 3 C -0.177 4.177 4 C 0.080 3.920 5 O -0.229 6.229 6 C -0.027 4.027 7 C 0.284 3.716 8 O -0.442 6.442 9 N -0.281 5.281 10 C -0.074 4.074 11 C -0.134 4.134 12 C -0.179 4.179 13 C 0.065 3.935 14 C -0.529 4.529 15 H 0.090 0.910 16 C -0.184 4.184 17 N -0.467 5.467 18 Si 0.809 3.191 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.188 1.188 22 C -0.242 4.242 23 C -0.118 4.118 24 C -0.220 4.220 25 C -0.082 4.082 26 C -0.115 4.115 27 Cl -0.038 7.038 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.262 0.738 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.185 0.815 41 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -11.887 -22.328 2.787 25.448 hybrid contribution 0.506 0.613 -0.156 0.810 sum -11.382 -21.714 2.631 24.657 Atomic orbital electron populations 1.20954 0.88588 1.04256 1.03894 1.19732 0.97754 0.90183 0.96468 1.20399 0.91242 0.98786 1.07286 1.19302 0.92083 0.84816 0.95822 1.86153 1.19494 1.28751 1.88551 1.22623 0.79298 0.93509 1.07290 1.20892 0.82491 0.91623 0.76595 1.90733 1.60095 1.43844 1.49510 1.42630 1.06078 1.07563 1.71859 1.17253 0.98320 0.84885 1.06949 1.20581 0.96175 0.97537 0.99109 1.21195 1.01483 0.91283 1.03969 1.18062 0.90400 0.94115 0.90951 1.19732 1.32893 0.98683 1.01548 0.91006 1.26720 0.93276 1.03898 0.94468 1.69808 1.33411 1.37306 1.06224 0.85115 0.79230 0.76469 0.78331 1.18297 1.19390 1.18823 1.20921 0.97918 0.96248 1.09132 1.20528 0.99058 0.92852 0.99402 1.21500 1.02080 0.90394 1.08023 1.21118 0.91618 0.99423 0.96087 1.20845 0.92930 0.86859 1.10858 1.98348 1.76778 1.31537 1.97142 0.89490 0.90118 0.90168 0.84582 0.84964 0.85271 0.73782 0.85139 0.86175 0.90412 0.88812 0.87637 0.81523 0.82287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 9.61 71.24 0.68 -0.87 16 2 C -0.04 -0.70 5.88 -19.86 -0.12 -0.81 16 3 C -0.16 -3.22 9.64 22.36 0.22 -3.01 16 4 C 0.13 2.59 6.69 22.50 0.15 2.74 16 5 O -0.32 -8.12 9.67 -73.68 -0.71 -8.83 16 6 C 0.05 0.96 5.22 71.24 0.37 1.33 16 7 C 0.50 15.50 7.74 87.66 0.68 16.18 16 8 O -0.56 -24.49 13.92 16.01 0.22 -24.27 16 9 N -0.63 -18.89 5.30 -303.11 -1.61 -20.50 16 10 C 0.02 0.81 6.31 38.56 0.24 1.05 16 11 C -0.11 -4.89 9.90 22.14 0.22 -4.67 16 12 C -0.16 -8.15 8.62 22.48 0.19 -7.95 16 13 C 0.07 3.69 5.55 -21.28 -0.12 3.57 16 14 C -0.50 -27.37 9.02 23.39 0.21 -27.16 16 15 H 0.07 3.83 7.85 -2.91 -0.02 3.81 16 16 C 0.03 1.45 5.42 85.24 0.46 1.91 16 17 N -0.84 -43.96 10.60 21.82 0.23 -43.73 16 18 Si 0.99 39.04 29.56 68.60 2.03 41.06 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 21 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 22 C -0.22 -11.62 9.74 22.48 0.22 -11.40 16 23 C -0.10 -4.73 8.61 22.13 0.19 -4.54 16 24 C -0.20 -2.90 9.04 22.36 0.20 -2.69 16 25 C -0.06 -0.88 9.82 22.28 0.22 -0.66 16 26 C -0.09 -1.42 6.31 22.33 0.14 -1.28 16 27 Cl -0.07 -0.97 27.29 -2.72 -0.07 -1.04 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.08 0.96 6.90 -2.38 -0.02 0.94 16 31 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.13 1.46 7.66 -2.39 -0.02 1.44 16 33 H 0.13 1.55 7.66 -2.38 -0.02 1.53 16 34 H 0.42 8.12 8.82 -92.71 -0.82 7.31 16 35 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 36 H 0.12 6.39 6.13 -2.91 -0.02 6.37 16 37 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 38 H 0.09 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.11 5.08 6.22 -2.91 -0.02 5.06 16 40 H 0.17 1.30 6.30 -2.91 -0.02 1.28 16 41 H 0.16 1.38 8.06 -2.92 -0.02 1.36 16 Total: -1.00 -72.48 365.07 4.53 -67.95 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 0.27 Total: 27.62 kcal Atomic # 6 Polarization: -42.43 SS G_CDS: 4.17 Total: -38.26 kcal Atomic # 7 Polarization: -62.85 SS G_CDS: -1.38 Total: -64.23 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.49 Total: -33.10 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.07 Total: -1.04 kcal Total: -72.48 4.53 -67.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000269651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.243 kcal (2) G-P(sol) polarization free energy of solvation -72.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds