Wall clock time and date at job start Tue Mar 31 2020 06:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34483 * 125.35634 * 2 1 4 4 C 1.46724 * 106.50338 * 180.20803 * 3 2 1 5 5 C 1.46321 * 127.05631 * 179.73387 * 4 3 2 6 6 N 1.31026 * 120.00263 * 180.02562 * 5 4 3 7 7 N 1.40099 * 120.00043 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.22065 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.40083 * 120.00175 * 179.97438 * 8 7 6 11 11 H 1.08002 * 119.99587 * 359.97438 * 10 8 7 12 12 C 1.40115 * 120.00272 * 179.97438 * 10 8 7 13 13 N 1.30657 * 120.00031 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99885 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47368 * 90.00475 * 14 12 10 16 16 H 1.48503 * 109.47136 * 210.00512 * 14 12 10 17 17 H 1.48501 * 109.47550 * 330.00087 * 14 12 10 18 18 C 1.39199 * 105.88738 * 359.77364 * 4 3 2 19 19 C 1.50698 * 126.00448 * 180.02562 * 18 4 3 20 20 N 1.34817 * 107.99338 * 359.97438 * 18 4 3 21 21 C 1.40085 * 124.83324 * 179.97438 * 20 18 4 22 22 C 1.38881 * 120.05886 * 114.99522 * 21 20 18 23 23 C 1.38091 * 119.94541 * 179.97438 * 22 21 20 24 24 C 1.38408 * 120.05639 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 119.94112 * 179.97438 * 24 23 22 26 26 C 1.38402 * 120.11092 * 0.25981 * 24 23 22 27 27 C 1.38092 * 120.05709 * 359.48315 * 26 24 23 28 28 H 1.09007 * 109.47152 * 270.17925 * 1 2 3 29 29 H 1.08991 * 109.47283 * 30.18433 * 1 2 3 30 30 H 1.08999 * 109.47040 * 150.18524 * 1 2 3 31 31 H 1.07999 * 126.74918 * 359.96540 * 3 2 1 32 32 H 1.08002 * 119.99849 * 0.04968 * 5 4 3 33 33 H 0.97001 * 120.00148 * 0.02562 * 7 6 5 34 34 H 0.97000 * 119.99538 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47649 * 269.96418 * 19 18 4 36 36 H 1.09001 * 109.46825 * 29.96217 * 19 18 4 37 37 H 1.09002 * 109.47202 * 149.95515 * 19 18 4 38 38 H 1.08003 * 120.02701 * 359.95636 * 22 21 20 39 39 H 1.07998 * 119.97179 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.96711 * 179.72332 * 26 24 23 41 41 H 1.08001 * 120.02670 * 180.27861 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2852 1.0968 0.0000 4 6 3.6738 0.6227 -0.0051 5 6 4.8855 1.4428 -0.0124 6 7 6.0641 0.8704 -0.0168 7 7 7.2243 1.6557 -0.0233 8 6 8.4365 1.0668 -0.0284 9 8 8.5237 -0.1508 -0.0269 10 6 9.5966 1.8519 -0.0354 11 1 9.5196 2.9292 -0.0371 12 6 10.8569 1.2397 -0.0401 13 7 10.9502 -0.0636 -0.0386 14 14 12.4039 2.2867 -0.0502 15 1 12.8208 2.5674 1.3472 16 1 13.4900 1.5585 -0.7540 17 1 12.1308 3.5667 -0.7518 18 6 3.6018 -0.7674 -0.0025 19 6 4.7734 -1.7152 -0.0054 20 7 2.2997 -1.1170 0.0041 21 6 1.8251 -2.4350 0.0080 22 6 1.1168 -2.9161 1.1014 23 6 0.6495 -4.2156 1.1025 24 6 0.8870 -5.0385 0.0153 25 17 0.2988 -6.6718 0.0201 26 6 1.5977 -4.5633 -1.0731 27 6 2.0625 -3.2630 -1.0814 28 1 -0.3634 0.0032 1.0277 29 1 -0.3633 0.8882 -0.5166 30 1 -0.3633 -0.8916 -0.5109 31 1 1.9534 2.1245 -0.0005 32 1 4.8084 2.5201 -0.0137 33 1 7.1550 2.6232 -0.0241 34 1 11.8227 -0.4873 -0.0422 35 1 5.0517 -1.9460 -1.0337 36 1 5.6177 -1.2506 0.5039 37 1 4.4984 -2.6345 0.5117 38 1 0.9318 -2.2745 1.9503 39 1 0.0990 -4.5903 1.9527 40 1 1.7856 -5.2089 -1.9183 41 1 2.6132 -2.8913 -1.9329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000447458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:05 Heat of formation + Delta-G solvation = 69.705305 kcal Electronic energy + Delta-G solvation = -26066.431736 eV Core-core repulsion = 22166.962059 eV Total energy + Delta-G solvation = -3899.469677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57665 -39.19631 -37.45777 -36.84843 -35.13956 -33.09750 -32.75299 -32.35615 -31.54073 -30.35778 -28.94826 -28.54553 -26.60434 -24.29373 -23.41295 -23.36391 -21.71017 -20.05101 -19.88217 -18.69763 -17.50377 -17.03834 -16.67465 -16.27133 -15.59554 -15.45898 -14.92236 -14.58405 -14.14314 -14.02694 -13.94635 -13.63308 -13.38156 -13.17954 -12.98901 -12.92501 -12.59856 -12.39263 -12.29281 -12.13425 -11.93307 -11.82170 -11.61345 -11.41244 -11.30660 -11.20340 -11.18569 -10.80653 -10.57782 -10.32945 -9.55680 -9.30147 -9.19030 -8.97551 -8.50857 -7.94338 -7.66648 -6.85558 -6.33883 -4.89007 0.50268 0.79437 1.68900 2.01002 2.43991 2.79429 3.07212 3.09023 3.13760 3.17575 3.75557 3.87502 4.20047 4.33880 4.38715 4.50992 4.63089 4.77611 4.89644 5.01429 5.16542 5.27068 5.33991 5.40783 5.46257 5.52486 5.66383 5.72991 5.73872 5.81362 5.86466 5.94168 6.04704 6.10855 6.15181 6.21147 6.52479 6.73064 6.89293 7.14834 7.25749 7.33888 7.55426 7.95853 8.07932 8.81741 8.89045 9.43334 10.44855 10.75658 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.002177 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.822707 B =12856.689546 C =14411.793187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.004 3.996 3 C -0.161 4.161 4 C -0.119 4.119 5 C 0.066 3.934 6 N -0.209 5.209 7 N -0.596 5.596 8 C 0.561 3.439 9 O -0.558 6.558 10 C -0.538 4.538 11 H 0.069 0.931 12 C 0.089 3.911 13 N -0.745 5.745 14 Si 0.915 3.085 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.263 1.263 18 C 0.072 3.928 19 C -0.087 4.087 20 N -0.405 5.405 21 C 0.131 3.869 22 C -0.098 4.098 23 C -0.099 4.099 24 C -0.033 4.033 25 Cl -0.066 7.066 26 C -0.097 4.097 27 C -0.096 4.096 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.144 0.856 32 H 0.103 0.897 33 H 0.366 0.634 34 H 0.273 0.727 35 H 0.071 0.929 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.142 0.858 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.539 -5.463 0.101 24.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.187 4.187 4 C -0.127 4.127 5 C -0.143 4.143 6 N -0.018 5.018 7 N -0.341 5.341 8 C 0.370 3.630 9 O -0.438 6.438 10 C -0.574 4.574 11 H 0.087 0.913 12 C -0.135 4.135 13 N -0.372 5.372 14 Si 0.739 3.261 15 H -0.195 1.195 16 H -0.202 1.202 17 H -0.187 1.187 18 C -0.042 4.042 19 C -0.144 4.144 20 N -0.081 5.081 21 C 0.041 3.959 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.059 4.059 25 Cl -0.037 7.037 26 C -0.116 4.116 27 C -0.116 4.116 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.162 0.838 32 H 0.120 0.880 33 H 0.201 0.799 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.131 0.869 37 H 0.070 0.930 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -22.810 -7.718 0.099 24.081 hybrid contribution 0.376 1.846 -0.007 1.883 sum -22.435 -5.872 0.092 23.191 Atomic orbital electron populations 1.20280 0.88351 1.02889 1.02248 1.20162 0.93071 0.84823 1.12110 1.21655 0.90837 0.97087 1.09091 1.18982 0.91007 0.89947 1.12751 1.23163 0.89646 0.96007 1.05511 1.74954 0.93798 1.25779 1.07262 1.47943 1.02859 1.06389 1.76940 1.16540 0.79576 0.88655 0.78244 1.90727 1.84827 1.14089 1.54196 1.19618 0.90069 0.94348 1.53409 0.91281 1.25744 1.00364 0.94907 0.92461 1.70050 1.25375 1.09741 1.32059 0.86250 0.80394 0.80410 0.79051 1.19480 1.20201 1.18689 1.21224 0.83194 0.94584 1.05197 1.20527 0.94727 0.96008 1.03153 1.40876 1.05603 1.02694 1.58947 1.17769 0.98955 0.84427 0.94741 1.21194 0.97904 0.95345 0.97336 1.20945 1.00387 0.92719 0.97764 1.21027 1.01010 0.86995 0.96903 1.98386 1.87106 1.19612 1.98573 1.20981 0.97232 0.95455 0.97940 1.21276 0.99442 0.93103 0.97731 0.91429 0.90267 0.92176 0.83817 0.87969 0.79920 0.91632 0.90993 0.86936 0.92996 0.84316 0.84118 0.84012 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 9.82 36.01 0.35 -0.32 16 2 C 0.00 0.04 6.76 -81.62 -0.55 -0.51 16 3 C -0.16 -2.15 10.99 -37.48 -0.41 -2.56 16 4 C -0.12 -1.98 6.34 -102.86 -0.65 -2.63 16 5 C 0.07 1.22 11.05 -14.65 -0.16 1.05 16 6 N -0.21 -4.76 8.64 32.08 0.28 -4.48 16 7 N -0.60 -14.55 6.26 28.80 0.18 -14.37 16 8 C 0.56 16.47 7.63 -15.57 -0.12 16.35 16 9 O -0.56 -18.57 15.18 4.86 0.07 -18.50 16 10 C -0.54 -15.06 9.22 -38.19 -0.35 -15.41 16 11 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 12 C 0.09 2.43 5.49 -17.35 -0.10 2.33 16 13 N -0.74 -21.93 11.69 55.55 0.65 -21.28 16 14 Si 0.91 19.58 29.56 -169.99 -5.02 14.55 16 15 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 16 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 17 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 18 C 0.07 1.17 6.88 -80.93 -0.56 0.61 16 19 C -0.09 -1.51 9.25 36.00 0.33 -1.18 16 20 N -0.40 -5.40 2.74 -51.88 -0.14 -5.54 16 21 C 0.13 1.47 4.42 -83.61 -0.37 1.10 16 22 C -0.10 -0.92 9.64 -39.40 -0.38 -1.30 16 23 C -0.10 -0.81 9.82 -39.57 -0.39 -1.19 16 24 C -0.03 -0.28 6.32 -39.46 -0.25 -0.53 16 25 Cl -0.07 -0.53 28.95 -51.86 -1.50 -2.04 16 26 C -0.10 -0.85 9.82 -39.57 -0.39 -1.24 16 27 C -0.10 -0.99 9.60 -39.40 -0.38 -1.36 16 28 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 7.75 -51.93 -0.40 0.09 16 31 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 32 H 0.10 1.61 8.04 -52.49 -0.42 1.19 16 33 H 0.37 7.62 8.62 -182.60 -1.57 6.05 16 34 H 0.27 7.20 8.29 -40.82 -0.34 6.86 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.11 2.40 6.34 -51.93 -0.33 2.07 16 37 H 0.05 0.80 7.76 -51.93 -0.40 0.40 16 38 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 376.78 15.07 5.68 5.68 Total: -1.00 -35.25 376.78 -10.24 -45.49 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -6.06 Total: 7.27 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -4.37 Total: -6.78 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: 0.96 Total: -45.68 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.07 Total: -18.50 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.25 -10.24 -45.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000447458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.194 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds