Wall clock time and date at job start Tue Mar 31 2020 06:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34483 * 125.35634 * 2 1 4 4 C 1.46724 * 106.50338 * 180.20803 * 3 2 1 5 5 C 1.46321 * 127.05631 * 179.73387 * 4 3 2 6 6 N 1.31026 * 120.00263 * 180.02562 * 5 4 3 7 7 N 1.40099 * 120.00043 * 180.02562 * 6 5 4 8 8 C 1.34774 * 119.99692 * 180.02562 * 7 6 5 9 9 O 1.22065 * 120.00385 * 359.97438 * 8 7 6 10 10 C 1.40083 * 120.00175 * 179.97438 * 8 7 6 11 11 H 1.08002 * 119.99587 * 359.97438 * 10 8 7 12 12 C 1.40115 * 120.00272 * 179.97438 * 10 8 7 13 13 N 1.30657 * 120.00031 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99885 * 179.97438 * 12 10 8 15 15 H 1.48501 * 109.47368 * 90.00475 * 14 12 10 16 16 H 1.48503 * 109.47136 * 210.00512 * 14 12 10 17 17 H 1.48501 * 109.47550 * 330.00087 * 14 12 10 18 18 C 1.39199 * 105.88738 * 359.77364 * 4 3 2 19 19 C 1.50698 * 126.00448 * 180.02562 * 18 4 3 20 20 N 1.34817 * 107.99338 * 359.97438 * 18 4 3 21 21 C 1.40085 * 124.83324 * 179.97438 * 20 18 4 22 22 C 1.38881 * 120.05886 * 114.99522 * 21 20 18 23 23 C 1.38091 * 119.94541 * 179.97438 * 22 21 20 24 24 C 1.38408 * 120.05639 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 119.94112 * 179.97438 * 24 23 22 26 26 C 1.38402 * 120.11092 * 0.25981 * 24 23 22 27 27 C 1.38092 * 120.05709 * 359.48315 * 26 24 23 28 28 H 1.09007 * 109.47152 * 270.17925 * 1 2 3 29 29 H 1.08991 * 109.47283 * 30.18433 * 1 2 3 30 30 H 1.08999 * 109.47040 * 150.18524 * 1 2 3 31 31 H 1.07999 * 126.74918 * 359.96540 * 3 2 1 32 32 H 1.08002 * 119.99849 * 0.04968 * 5 4 3 33 33 H 0.97001 * 120.00148 * 0.02562 * 7 6 5 34 34 H 0.97000 * 119.99538 * 179.97438 * 13 12 10 35 35 H 1.08999 * 109.47649 * 269.96418 * 19 18 4 36 36 H 1.09001 * 109.46825 * 29.96217 * 19 18 4 37 37 H 1.09002 * 109.47202 * 149.95515 * 19 18 4 38 38 H 1.08003 * 120.02701 * 359.95636 * 22 21 20 39 39 H 1.07998 * 119.97179 * 179.97438 * 23 22 21 40 40 H 1.08007 * 119.96711 * 179.72332 * 26 24 23 41 41 H 1.08001 * 120.02670 * 180.27861 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2852 1.0968 0.0000 4 6 3.6738 0.6227 -0.0051 5 6 4.8855 1.4428 -0.0124 6 7 6.0641 0.8704 -0.0168 7 7 7.2243 1.6557 -0.0233 8 6 8.4365 1.0668 -0.0284 9 8 8.5237 -0.1508 -0.0269 10 6 9.5966 1.8519 -0.0354 11 1 9.5196 2.9292 -0.0371 12 6 10.8569 1.2397 -0.0401 13 7 10.9502 -0.0636 -0.0386 14 14 12.4039 2.2867 -0.0502 15 1 12.8208 2.5674 1.3472 16 1 13.4900 1.5585 -0.7540 17 1 12.1308 3.5667 -0.7518 18 6 3.6018 -0.7674 -0.0025 19 6 4.7734 -1.7152 -0.0054 20 7 2.2997 -1.1170 0.0041 21 6 1.8251 -2.4350 0.0080 22 6 1.1168 -2.9161 1.1014 23 6 0.6495 -4.2156 1.1025 24 6 0.8870 -5.0385 0.0153 25 17 0.2988 -6.6718 0.0201 26 6 1.5977 -4.5633 -1.0731 27 6 2.0625 -3.2630 -1.0814 28 1 -0.3634 0.0032 1.0277 29 1 -0.3633 0.8882 -0.5166 30 1 -0.3633 -0.8916 -0.5109 31 1 1.9534 2.1245 -0.0005 32 1 4.8084 2.5201 -0.0137 33 1 7.1550 2.6232 -0.0241 34 1 11.8227 -0.4873 -0.0422 35 1 5.0517 -1.9460 -1.0337 36 1 5.6177 -1.2506 0.5039 37 1 4.4984 -2.6345 0.5117 38 1 0.9318 -2.2745 1.9503 39 1 0.0990 -4.5903 1.9527 40 1 1.7856 -5.2089 -1.9183 41 1 2.6132 -2.8913 -1.9329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000447458.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:04 Heat of formation + Delta-G solvation = 48.759381 kcal Electronic energy + Delta-G solvation = -26067.340019 eV Core-core repulsion = 22166.962059 eV Total energy + Delta-G solvation = -3900.377960 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.61015 -40.00910 -39.46681 -37.56264 -36.88739 -34.73007 -34.08646 -33.77721 -32.32000 -31.90060 -30.04022 -29.73170 -28.49046 -25.59329 -24.43594 -24.10348 -22.98451 -21.81435 -21.04577 -20.12652 -18.94257 -18.29717 -17.76183 -17.53359 -17.11015 -17.02936 -15.93963 -15.66730 -15.53051 -15.06578 -14.91105 -14.68485 -14.67701 -14.58757 -14.38017 -14.07179 -13.93898 -13.39565 -13.31049 -13.20984 -13.18784 -13.09909 -12.95492 -12.68594 -12.66769 -12.56340 -12.41006 -12.34404 -12.01500 -11.90791 -10.98527 -10.74455 -10.31523 -10.26712 -9.91002 -9.77294 -9.11786 -8.43131 -8.39422 -7.05881 -0.28265 0.08334 0.61726 0.99697 1.36972 1.39308 1.43614 1.57688 1.78441 2.15083 2.28831 2.34364 2.45850 2.55796 3.63433 3.68025 3.71492 3.72046 3.93070 4.02181 4.06711 4.18217 4.22200 4.43854 4.49909 4.62380 4.69304 4.72348 4.76575 4.80899 4.83915 4.98662 5.02453 5.10138 5.15990 5.17676 5.19825 5.38107 5.44878 5.49824 5.86917 5.96176 6.10555 6.18142 6.49968 6.70693 7.08613 7.55899 8.45186 8.66310 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.002177 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.822707 B =12856.689546 C =14411.793187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.015 3.985 3 C -0.163 4.163 4 C -0.157 4.157 5 C 0.106 3.894 6 N -0.273 5.273 7 N -0.601 5.601 8 C 0.547 3.453 9 O -0.616 6.616 10 C -0.563 4.563 11 H 0.092 0.908 12 C 0.030 3.970 13 N -0.800 5.800 14 Si 1.008 2.992 15 H -0.258 1.258 16 H -0.269 1.269 17 H -0.246 1.246 18 C 0.061 3.939 19 C -0.074 4.074 20 N -0.398 5.398 21 C 0.105 3.895 22 C -0.095 4.095 23 C -0.092 4.092 24 C -0.034 4.034 25 Cl -0.058 7.058 26 C -0.096 4.096 27 C -0.105 4.105 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.173 0.827 32 H 0.132 0.868 33 H 0.379 0.621 34 H 0.280 0.720 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.150 0.850 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.966 -4.362 0.477 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.188 4.188 4 C -0.166 4.166 5 C -0.103 4.103 6 N -0.080 5.080 7 N -0.346 5.346 8 C 0.356 3.644 9 O -0.502 6.502 10 C -0.600 4.600 11 H 0.110 0.890 12 C -0.188 4.188 13 N -0.428 5.428 14 Si 0.826 3.174 15 H -0.183 1.183 16 H -0.194 1.194 17 H -0.169 1.169 18 C -0.055 4.055 19 C -0.132 4.132 20 N -0.073 5.073 21 C 0.015 3.985 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.061 4.061 25 Cl -0.029 7.029 26 C -0.115 4.115 27 C -0.124 4.124 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.190 0.810 32 H 0.149 0.851 33 H 0.217 0.783 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.183 0.817 40 H 0.175 0.825 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -25.316 -6.585 0.474 26.162 hybrid contribution 0.746 1.378 -0.120 1.571 sum -24.570 -5.207 0.354 25.118 Atomic orbital electron populations 1.20422 0.85115 1.04093 1.03816 1.20877 0.94916 0.83935 1.09359 1.21952 0.88813 0.98903 1.09144 1.19258 0.91878 0.90354 1.15071 1.23811 0.89116 0.97871 0.99524 1.75115 0.94297 1.26171 1.12464 1.47277 1.02780 1.06901 1.77660 1.16942 0.81390 0.88212 0.77815 1.90663 1.86239 1.16289 1.57022 1.20165 0.90608 0.95501 1.53691 0.89010 1.27119 1.04552 0.96305 0.90871 1.70217 1.26953 1.12520 1.33106 0.84873 0.74426 0.78393 0.79692 1.18275 1.19392 1.16935 1.21046 0.84239 0.94450 1.05766 1.20239 0.94218 0.96640 1.02111 1.40981 1.04582 1.04122 1.57629 1.18011 1.00616 0.83771 0.96086 1.21292 0.97275 0.95955 0.96875 1.21200 0.99675 0.91996 0.98190 1.21167 1.00577 0.87402 0.96921 1.98395 1.86927 1.19047 1.98548 1.21130 0.96761 0.94975 0.98628 1.21272 0.99852 0.93741 0.97582 0.89557 0.88305 0.91721 0.81011 0.85107 0.78337 0.90959 0.91963 0.91075 0.91620 0.83232 0.81697 0.82544 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 9.82 71.24 0.70 -0.30 16 2 C 0.01 0.33 6.76 40.90 0.28 0.60 16 3 C -0.16 -4.00 10.99 23.63 0.26 -3.74 16 4 C -0.16 -5.20 6.34 -18.73 -0.12 -5.32 16 5 C 0.11 3.95 11.05 86.92 0.96 4.91 16 6 N -0.27 -13.13 8.64 -52.40 -0.45 -13.58 16 7 N -0.60 -30.86 6.26 -180.85 -1.13 -31.99 16 8 C 0.55 33.92 7.63 84.69 0.65 34.57 16 9 O -0.62 -43.97 15.18 -5.53 -0.08 -44.05 16 10 C -0.56 -32.53 9.22 23.17 0.21 -32.32 16 11 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 12 C 0.03 1.68 5.49 85.32 0.47 2.14 16 13 N -0.80 -49.20 11.69 21.85 0.26 -48.94 16 14 Si 1.01 40.34 29.56 68.60 2.03 42.37 16 15 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 16 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 17 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 18 C 0.06 2.01 6.88 42.33 0.29 2.31 16 19 C -0.07 -2.78 9.25 71.24 0.66 -2.12 16 20 N -0.40 -10.23 2.74 -318.05 -0.87 -11.10 16 21 C 0.10 2.23 4.42 38.13 0.17 2.39 16 22 C -0.09 -1.56 9.64 22.39 0.22 -1.35 16 23 C -0.09 -1.25 9.82 22.28 0.22 -1.03 16 24 C -0.03 -0.52 6.32 22.35 0.14 -0.37 16 25 Cl -0.06 -0.83 28.95 -2.72 -0.08 -0.91 16 26 C -0.10 -1.56 9.82 22.27 0.22 -1.34 16 27 C -0.11 -2.10 9.60 22.39 0.22 -1.88 16 28 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.83 7.75 -2.39 -0.02 0.81 16 31 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.13 4.00 8.04 -2.91 -0.02 3.97 16 33 H 0.38 16.36 8.62 -213.32 -1.84 14.52 16 34 H 0.28 15.38 8.29 -92.71 -0.77 14.62 16 35 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.07 3.32 6.34 -2.39 -0.02 3.30 16 37 H 0.06 2.15 7.76 -2.39 -0.02 2.14 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 40 H 0.16 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -83.14 376.78 4.44 -78.70 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: -0.76 Total: 32.36 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 5.53 Total: -2.85 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -2.20 Total: -105.62 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -0.08 Total: -44.05 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -83.14 4.44 -78.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000447458.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.457 kcal (2) G-P(sol) polarization free energy of solvation -83.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds