Wall clock time and date at job start Tue Mar 31 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38237 * 119.99989 * 2 1 4 4 C 1.38233 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00030 * 180.02562 * 4 3 2 6 6 C 1.38237 * 120.00019 * 359.97438 * 4 3 2 7 7 S 1.76205 * 120.00038 * 179.97438 * 6 4 3 8 8 O 1.42107 * 106.39944 * 134.65193 * 7 6 4 9 9 O 1.42097 * 106.39936 * 1.73641 * 7 6 4 10 10 N 1.65595 * 107.21945 * 248.19215 * 7 6 4 11 11 C 1.38856 * 119.99649 * 67.73454 * 10 7 6 12 12 C 1.39566 * 119.84335 * 313.76602 * 11 10 7 13 13 C 1.36342 * 120.15981 * 180.23464 * 12 11 10 14 14 C 1.40884 * 119.83408 * 359.52785 * 13 12 11 15 15 C 1.41143 * 120.15381 * 180.27421 * 14 13 12 16 16 H 1.07998 * 119.99955 * 145.80383 * 15 14 13 17 17 C 1.39867 * 119.99689 * 325.79978 * 15 14 13 18 18 N 1.30898 * 120.00535 * 2.64243 * 17 15 14 19 19 Si 1.86805 * 119.99676 * 182.63641 * 17 15 14 20 20 H 1.48498 * 109.46970 * 90.00541 * 19 17 15 21 21 H 1.48506 * 109.46960 * 210.00317 * 19 17 15 22 22 H 1.48494 * 109.47531 * 330.00193 * 19 17 15 23 23 C 1.40882 * 119.69428 * 0.24953 * 14 13 12 24 24 C 1.36343 * 119.83648 * 0.02562 * 23 14 13 25 25 C 1.38231 * 120.00118 * 0.27730 * 6 4 3 26 26 C 1.50697 * 120.00221 * 179.72412 * 25 6 4 27 27 C 1.38231 * 120.00146 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47274 * 89.99389 * 1 2 3 29 29 H 1.09004 * 109.47470 * 210.00122 * 1 2 3 30 30 H 1.09005 * 109.46866 * 329.99528 * 1 2 3 31 31 H 1.07994 * 120.00136 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.46988 * 257.73647 * 5 4 3 33 33 H 1.08998 * 109.46729 * 17.74094 * 5 4 3 34 34 H 1.09006 * 109.46650 * 137.73583 * 5 4 3 35 35 H 0.97003 * 120.00322 * 247.72904 * 10 7 6 36 36 H 1.07999 * 119.91965 * 0.03621 * 12 11 10 37 37 H 1.07997 * 120.08301 * 179.80149 * 13 12 11 38 38 H 0.96996 * 120.00563 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08628 * 180.02562 * 23 14 13 40 40 H 1.07997 * 119.92201 * 180.02562 * 24 23 14 41 41 H 1.08999 * 109.46883 * 93.95752 * 26 25 6 42 42 H 1.09002 * 109.47590 * 213.95758 * 26 25 6 43 43 H 1.08996 * 109.47248 * 333.95990 * 26 25 6 44 44 H 1.08001 * 119.99694 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0016 7 16 6.0337 0.0000 0.0016 8 8 6.4349 -0.9573 0.9723 9 8 6.4349 1.3625 0.0417 10 7 6.5239 -0.5890 -1.4664 11 6 6.2942 0.1468 -2.6214 12 6 5.0403 0.7183 -2.8429 13 6 4.8062 1.4380 -3.9770 14 6 5.8369 1.6125 -4.9216 15 6 5.6037 2.3611 -6.0952 16 1 6.3968 2.9571 -6.5220 17 6 4.3455 2.3310 -6.7054 18 7 3.3696 1.6502 -6.1599 19 14 4.0577 3.2627 -8.2987 20 1 4.3627 2.3778 -9.4515 21 1 2.6391 3.6963 -8.3693 22 1 4.9423 4.4546 -8.3419 23 6 7.1015 1.0367 -4.6891 24 6 7.3196 0.3147 -3.5533 25 6 3.5805 -1.1971 -0.0037 26 6 4.3340 -2.5022 -0.0088 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.7051 2.7080 -1.0029 33 1 3.6679 3.3062 0.3142 34 1 5.1741 2.4364 0.6926 35 1 6.9716 -1.4479 -1.5195 36 1 4.2526 0.5873 -2.1158 37 1 3.8346 1.8769 -4.1487 38 1 2.4969 1.6296 -6.5829 39 1 7.8962 1.1668 -5.4088 40 1 8.2886 -0.1269 -3.3734 41 1 4.4538 -2.8565 1.0150 42 1 3.7778 -3.2407 -0.5861 43 1 5.3155 -2.3534 -0.4589 44 1 1.6581 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000617575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:37 Heat of formation + Delta-G solvation = -27.116811 kcal Electronic energy + Delta-G solvation = -28791.033596 eV Core-core repulsion = 24992.949447 eV Total energy + Delta-G solvation = -3798.084149 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.119 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.71570 -38.08558 -37.09313 -35.61681 -34.85880 -33.72012 -33.39460 -32.74174 -29.64966 -28.71964 -27.97143 -27.07445 -26.60186 -24.74813 -21.55276 -21.07508 -20.91517 -20.86485 -19.10493 -17.49942 -17.40058 -17.10422 -16.63182 -15.90201 -15.25968 -14.90219 -14.54467 -14.40839 -14.05243 -13.89084 -13.53538 -13.28172 -13.16925 -13.01317 -12.85031 -12.71356 -12.60666 -12.32718 -12.12478 -12.07115 -12.01369 -11.74167 -11.61536 -11.36292 -11.32448 -11.16315 -11.10625 -11.04325 -10.88617 -10.75358 -10.04011 -9.91358 -9.70049 -9.44651 -9.18102 -8.78870 -8.47680 -7.68261 -7.06251 -6.69616 -4.42483 0.70050 0.98978 1.41441 2.62643 2.96677 3.05304 3.09604 3.10288 3.30882 3.59464 3.92105 4.07572 4.56607 4.59898 4.69777 4.76127 4.87069 5.19540 5.24042 5.37716 5.47957 5.50731 5.51963 5.56059 5.61087 5.78657 5.84004 5.95465 6.04361 6.10338 6.14162 6.19623 6.22105 6.31318 6.43091 6.52827 6.72439 6.77295 6.99441 7.00815 7.09045 7.15915 7.38215 7.52709 7.80713 7.94516 8.03536 8.20126 8.56200 8.84685 8.88863 10.21631 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.004392 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.954145 B = 6373.945245 C = 7752.404759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.024 4.024 3 C -0.154 4.154 4 C 0.039 3.961 5 C -0.157 4.157 6 C -0.681 4.681 7 S 2.689 3.311 8 O -0.974 6.974 9 O -0.946 6.946 10 N -1.040 6.040 11 C 0.018 3.982 12 C -0.137 4.137 13 C -0.130 4.130 14 C 0.102 3.898 15 C -0.458 4.458 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.809 5.809 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.262 1.262 23 C -0.200 4.200 24 C -0.097 4.097 25 C 0.028 3.972 26 C -0.136 4.136 27 C -0.156 4.156 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.098 0.902 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.408 0.592 36 H 0.102 0.898 37 H 0.132 0.868 38 H 0.278 0.722 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.591 -4.506 9.982 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.025 4.025 3 C -0.172 4.172 4 C 0.038 3.962 5 C -0.213 4.213 6 C -0.769 4.769 7 S 2.782 3.218 8 O -0.964 6.964 9 O -0.936 6.936 10 N -0.792 5.792 11 C -0.076 4.076 12 C -0.158 4.158 13 C -0.150 4.150 14 C 0.099 3.901 15 C -0.489 4.489 16 H 0.096 0.904 17 C -0.146 4.146 18 N -0.436 5.436 19 Si 0.740 3.260 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.186 1.186 23 C -0.221 4.221 24 C -0.119 4.119 25 C 0.026 3.974 26 C -0.193 4.193 27 C -0.175 4.175 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.132 0.868 35 H 0.244 0.756 36 H 0.120 0.880 37 H 0.149 0.851 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.378 -4.147 10.679 12.264 hybrid contribution -0.889 -0.303 -1.260 1.572 sum -5.267 -4.450 9.419 11.673 Atomic orbital electron populations 1.20907 0.90894 1.02928 1.02995 1.20131 0.96124 0.93219 0.92981 1.21022 0.93463 0.97843 1.04902 1.19665 0.94007 0.93863 0.88684 1.21748 1.00795 0.92130 1.06673 1.30460 1.26688 0.98473 1.21247 1.02036 0.73967 0.73620 0.72215 1.93557 1.81917 1.62786 1.58189 1.93555 1.81041 1.33500 1.85470 1.52558 1.73515 1.31278 1.21883 1.16767 0.94656 1.06199 0.90008 1.20812 0.93600 1.01932 0.99428 1.21148 1.01081 1.01147 0.91611 1.17727 0.90745 0.89891 0.91768 1.19518 0.96678 1.24936 1.07788 0.90445 1.25882 0.95348 0.94065 0.99256 1.69771 1.02660 1.33490 1.37694 0.86198 0.78182 0.80268 0.81349 1.19559 1.20311 1.18631 1.20758 0.98856 1.04021 0.98448 1.20222 0.95790 1.00494 0.95407 1.19414 0.94143 0.93204 0.90611 1.21169 0.99820 0.94337 1.03953 1.20875 0.93304 0.97782 1.05557 0.90308 0.91283 0.91170 0.85329 0.88373 0.91886 0.86848 0.75602 0.88020 0.85066 0.91078 0.88344 0.88716 0.89028 0.90119 0.91644 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.01 36.00 0.36 -0.80 16 2 C -0.02 -0.32 5.88 -104.63 -0.62 -0.93 16 3 C -0.15 -2.21 9.32 -39.58 -0.37 -2.58 16 4 C 0.04 0.64 4.47 -104.62 -0.47 0.17 16 5 C -0.16 -2.54 8.39 36.01 0.30 -2.24 16 6 C -0.68 -11.41 3.89 -39.58 -0.15 -11.56 16 7 S 2.69 47.35 4.67 -107.50 -0.50 46.85 16 8 O -0.97 -17.57 16.12 -57.17 -0.92 -18.49 16 9 O -0.95 -18.56 12.99 -57.17 -0.74 -19.30 16 10 N -1.04 -18.19 4.87 32.51 0.16 -18.03 16 11 C 0.02 0.38 6.00 -83.69 -0.50 -0.12 16 12 C -0.14 -3.07 8.53 -39.77 -0.34 -3.41 16 13 C -0.13 -3.24 8.60 -39.26 -0.34 -3.57 16 14 C 0.10 2.59 5.55 -106.79 -0.59 2.00 16 15 C -0.46 -11.72 9.03 -37.87 -0.34 -12.07 16 16 H 0.08 1.90 7.85 -52.49 -0.41 1.49 16 17 C 0.07 1.70 5.41 -17.34 -0.09 1.61 16 18 N -0.81 -20.28 10.61 55.54 0.59 -19.69 16 19 Si 0.92 18.37 29.56 -169.99 -5.02 13.34 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 23 C -0.20 -4.68 9.74 -39.26 -0.38 -5.06 16 24 C -0.10 -2.08 9.90 -39.77 -0.39 -2.48 16 25 C 0.03 0.42 5.87 -104.63 -0.61 -0.20 16 26 C -0.14 -1.76 8.80 36.00 0.32 -1.44 16 27 C -0.16 -2.11 9.37 -39.58 -0.37 -2.48 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 30 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 31 H 0.13 1.56 8.02 -52.49 -0.42 1.14 16 32 H 0.10 1.79 7.26 -51.93 -0.38 1.41 16 33 H 0.06 0.83 7.98 -51.93 -0.41 0.42 16 34 H 0.11 1.89 5.46 -52.14 -0.28 1.60 16 35 H 0.41 5.94 8.53 -34.47 -0.29 5.65 16 36 H 0.10 2.12 4.06 -52.49 -0.21 1.90 16 37 H 0.13 3.41 6.15 -52.49 -0.32 3.09 16 38 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.08 0.86 8.11 -51.93 -0.42 0.44 16 43 H 0.06 0.87 4.94 -51.93 -0.26 0.62 16 44 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -29.70 362.20 -11.09 -40.79 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -5.50 Total: 14.23 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: -4.60 Total: -45.16 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.75 Total: -37.72 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -1.66 Total: -37.78 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.34 kcal Atomic # 16 Polarization: 47.35 SS G_CDS: -0.50 Total: 46.85 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.70 -11.09 -40.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000617575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -29.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds