Wall clock time and date at job start Tue Mar 31 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38237 * 119.99989 * 2 1 4 4 C 1.38233 * 119.99935 * 179.97438 * 3 2 1 5 5 C 1.50703 * 120.00030 * 180.02562 * 4 3 2 6 6 C 1.38237 * 120.00019 * 359.97438 * 4 3 2 7 7 S 1.76205 * 120.00038 * 179.97438 * 6 4 3 8 8 O 1.42107 * 106.39944 * 134.65193 * 7 6 4 9 9 O 1.42097 * 106.39936 * 1.73641 * 7 6 4 10 10 N 1.65595 * 107.21945 * 248.19215 * 7 6 4 11 11 C 1.38856 * 119.99649 * 67.73454 * 10 7 6 12 12 C 1.39566 * 119.84335 * 313.76602 * 11 10 7 13 13 C 1.36342 * 120.15981 * 180.23464 * 12 11 10 14 14 C 1.40884 * 119.83408 * 359.52785 * 13 12 11 15 15 C 1.41143 * 120.15381 * 180.27421 * 14 13 12 16 16 H 1.07998 * 119.99955 * 145.80383 * 15 14 13 17 17 C 1.39867 * 119.99689 * 325.79978 * 15 14 13 18 18 N 1.30898 * 120.00535 * 2.64243 * 17 15 14 19 19 Si 1.86805 * 119.99676 * 182.63641 * 17 15 14 20 20 H 1.48498 * 109.46970 * 90.00541 * 19 17 15 21 21 H 1.48506 * 109.46960 * 210.00317 * 19 17 15 22 22 H 1.48494 * 109.47531 * 330.00193 * 19 17 15 23 23 C 1.40882 * 119.69428 * 0.24953 * 14 13 12 24 24 C 1.36343 * 119.83648 * 0.02562 * 23 14 13 25 25 C 1.38231 * 120.00118 * 0.27730 * 6 4 3 26 26 C 1.50697 * 120.00221 * 179.72412 * 25 6 4 27 27 C 1.38231 * 120.00146 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47274 * 89.99389 * 1 2 3 29 29 H 1.09004 * 109.47470 * 210.00122 * 1 2 3 30 30 H 1.09005 * 109.46866 * 329.99528 * 1 2 3 31 31 H 1.07994 * 120.00136 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.46988 * 257.73647 * 5 4 3 33 33 H 1.08998 * 109.46729 * 17.74094 * 5 4 3 34 34 H 1.09006 * 109.46650 * 137.73583 * 5 4 3 35 35 H 0.97003 * 120.00322 * 247.72904 * 10 7 6 36 36 H 1.07999 * 119.91965 * 0.03621 * 12 11 10 37 37 H 1.07997 * 120.08301 * 179.80149 * 13 12 11 38 38 H 0.96996 * 120.00563 * 179.97438 * 18 17 15 39 39 H 1.08002 * 120.08628 * 180.02562 * 23 14 13 40 40 H 1.07997 * 119.92201 * 180.02562 * 24 23 14 41 41 H 1.08999 * 109.46883 * 93.95752 * 26 25 6 42 42 H 1.09002 * 109.47590 * 213.95758 * 26 25 6 43 43 H 1.08996 * 109.47248 * 333.95990 * 26 25 6 44 44 H 1.08001 * 119.99694 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3340 2.5023 0.0011 6 6 4.2717 0.0000 0.0016 7 16 6.0337 0.0000 0.0016 8 8 6.4349 -0.9573 0.9723 9 8 6.4349 1.3625 0.0417 10 7 6.5239 -0.5890 -1.4664 11 6 6.2942 0.1468 -2.6214 12 6 5.0403 0.7183 -2.8429 13 6 4.8062 1.4380 -3.9770 14 6 5.8369 1.6125 -4.9216 15 6 5.6037 2.3611 -6.0952 16 1 6.3968 2.9571 -6.5220 17 6 4.3455 2.3310 -6.7054 18 7 3.3696 1.6502 -6.1599 19 14 4.0577 3.2627 -8.2987 20 1 4.3627 2.3778 -9.4515 21 1 2.6391 3.6963 -8.3693 22 1 4.9423 4.4546 -8.3419 23 6 7.1015 1.0367 -4.6891 24 6 7.3196 0.3147 -3.5533 25 6 3.5805 -1.1971 -0.0037 26 6 4.3340 -2.5022 -0.0088 27 6 2.1982 -1.1971 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.7051 2.7080 -1.0029 33 1 3.6679 3.3062 0.3142 34 1 5.1741 2.4364 0.6926 35 1 6.9716 -1.4479 -1.5195 36 1 4.2526 0.5873 -2.1158 37 1 3.8346 1.8769 -4.1487 38 1 2.4969 1.6296 -6.5829 39 1 7.8962 1.1668 -5.4088 40 1 8.2886 -0.1269 -3.3734 41 1 4.4538 -2.8565 1.0150 42 1 3.7778 -3.2407 -0.5861 43 1 5.3155 -2.3534 -0.4589 44 1 1.6581 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000617575.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:36 Heat of formation + Delta-G solvation = -43.187159 kcal Electronic energy + Delta-G solvation = -28791.730458 eV Core-core repulsion = 24992.949447 eV Total energy + Delta-G solvation = -3798.781012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.119 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.83386 -39.80769 -38.54189 -37.06707 -36.54748 -34.76901 -34.67794 -34.33883 -31.44338 -30.50122 -28.96205 -28.14715 -27.71450 -26.54481 -23.16733 -22.73486 -22.25061 -21.99048 -20.53444 -19.24036 -18.84736 -18.64514 -17.99490 -17.18798 -16.99278 -16.20753 -15.92875 -15.69451 -15.32519 -15.21574 -15.11055 -14.62064 -14.39501 -14.20378 -14.14132 -13.92961 -13.85110 -13.76269 -13.58815 -13.42377 -13.17002 -13.10815 -13.08803 -12.96523 -12.89034 -12.74578 -12.45040 -12.31240 -12.18930 -12.09987 -11.65877 -11.44170 -11.34847 -11.14792 -10.86577 -9.95433 -9.60811 -9.49444 -8.86261 -8.49992 -6.32502 -0.66036 -0.18881 0.30033 0.87078 1.13511 1.41498 1.49892 1.54069 1.94873 2.24895 2.39321 2.70753 2.80744 3.33974 3.63518 3.66762 3.70622 3.77139 4.20811 4.23667 4.36323 4.37024 4.41876 4.46625 4.52603 4.56095 4.65676 4.73613 4.79418 4.84463 4.91394 5.00126 5.05391 5.16027 5.17109 5.22016 5.29944 5.32218 5.38729 5.45822 5.49517 5.69350 5.76875 5.92660 6.00348 6.11010 6.29605 6.38699 6.69944 6.97782 7.03492 8.42908 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.011482 B = 0.004392 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.954145 B = 6373.945245 C = 7752.404759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.023 4.023 3 C -0.165 4.165 4 C 0.018 3.982 5 C -0.156 4.156 6 C -0.701 4.701 7 S 2.698 3.302 8 O -0.979 6.979 9 O -0.971 6.971 10 N -1.035 6.035 11 C 0.033 3.967 12 C -0.139 4.139 13 C -0.150 4.150 14 C 0.069 3.931 15 C -0.494 4.494 16 H 0.076 0.924 17 C 0.030 3.970 18 N -0.839 5.839 19 Si 0.985 3.015 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.260 1.260 23 C -0.210 4.210 24 C -0.103 4.103 25 C 0.016 3.984 26 C -0.143 4.143 27 C -0.160 4.160 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.424 0.576 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.284 0.716 39 H 0.109 0.891 40 H 0.127 0.873 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.056 0.944 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.929 -5.711 10.399 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.023 4.023 3 C -0.184 4.184 4 C 0.017 3.983 5 C -0.213 4.213 6 C -0.791 4.791 7 S 2.793 3.207 8 O -0.969 6.969 9 O -0.961 6.961 10 N -0.788 5.788 11 C -0.062 4.062 12 C -0.159 4.159 13 C -0.170 4.170 14 C 0.066 3.934 15 C -0.525 4.525 16 H 0.094 0.906 17 C -0.183 4.183 18 N -0.466 5.466 19 Si 0.806 3.194 20 H -0.190 1.190 21 H -0.194 1.194 22 H -0.184 1.184 23 C -0.231 4.231 24 C -0.124 4.124 25 C 0.014 3.986 26 C -0.199 4.199 27 C -0.179 4.179 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.262 0.738 36 H 0.133 0.867 37 H 0.131 0.869 38 H 0.094 0.906 39 H 0.127 0.873 40 H 0.145 0.855 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.075 0.925 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.667 -5.374 11.112 13.582 hybrid contribution -0.502 -0.023 -1.208 1.308 sum -6.169 -5.397 9.904 12.856 Atomic orbital electron populations 1.20995 0.88123 1.04733 1.03692 1.20614 0.98172 0.92605 0.90939 1.21340 0.92852 0.99482 1.04686 1.19771 0.95056 0.93495 0.90014 1.21667 1.01214 0.93571 1.04809 1.30250 1.25532 0.99644 1.23672 1.01563 0.74413 0.72844 0.71848 1.93544 1.82546 1.62755 1.58076 1.93537 1.82086 1.34777 1.85741 1.52452 1.73783 1.31760 1.20793 1.16810 0.93949 1.04925 0.90513 1.20959 0.94741 1.01380 0.98859 1.21047 1.00518 1.02623 0.92829 1.18060 0.91912 0.91057 0.92330 1.19745 0.97686 1.26311 1.08719 0.90630 1.26691 0.94662 0.94616 1.02302 1.69849 1.03129 1.34530 1.39129 0.85150 0.78277 0.78869 0.77059 1.19017 1.19427 1.18375 1.20974 0.98449 1.04159 0.99473 1.20577 0.97280 0.99891 0.94684 1.19782 0.95224 0.93311 0.90265 1.21306 0.99537 0.94016 1.05053 1.21315 0.92848 0.99326 1.04397 0.89904 0.89186 0.89809 0.83536 0.91143 0.89426 0.87709 0.73830 0.86677 0.86925 0.90565 0.87293 0.85469 0.87940 0.87658 0.92490 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.89 10.01 71.23 0.71 -1.17 16 2 C -0.02 -0.55 5.88 -19.87 -0.12 -0.67 16 3 C -0.16 -4.53 9.32 22.27 0.21 -4.32 16 4 C 0.02 0.59 4.47 -19.86 -0.09 0.50 16 5 C -0.16 -5.17 8.39 71.24 0.60 -4.57 16 6 C -0.70 -23.08 3.89 22.27 0.09 -23.00 16 7 S 2.70 94.32 4.67 -56.49 -0.26 94.06 16 8 O -0.98 -34.52 16.12 -128.00 -2.06 -36.59 16 9 O -0.97 -38.80 12.99 -128.00 -1.66 -40.46 16 10 N -1.03 -35.35 4.87 -51.06 -0.25 -35.60 16 11 C 0.03 1.39 6.00 38.67 0.23 1.62 16 12 C -0.14 -6.33 8.53 22.15 0.19 -6.14 16 13 C -0.15 -7.76 8.60 22.48 0.19 -7.57 16 14 C 0.07 3.65 5.55 -21.27 -0.12 3.53 16 15 C -0.49 -26.12 9.03 23.38 0.21 -25.91 16 16 H 0.08 3.85 7.85 -2.91 -0.02 3.83 16 17 C 0.03 1.47 5.41 85.23 0.46 1.93 16 18 N -0.84 -43.11 10.61 21.82 0.23 -42.88 16 19 Si 0.98 38.00 29.56 68.60 2.03 40.03 16 20 H -0.27 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 23 C -0.21 -9.95 9.74 22.48 0.22 -9.73 16 24 C -0.10 -4.34 9.90 22.15 0.22 -4.12 16 25 C 0.02 0.44 5.87 -19.87 -0.12 0.33 16 26 C -0.14 -3.38 8.80 71.23 0.63 -2.75 16 27 C -0.16 -3.88 9.37 22.27 0.21 -3.67 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.07 8.09 -2.38 -0.02 1.05 16 30 H 0.08 1.12 8.09 -2.38 -0.02 1.10 16 31 H 0.15 3.34 8.02 -2.91 -0.02 3.31 16 32 H 0.07 2.71 7.26 -2.39 -0.02 2.69 16 33 H 0.09 2.34 7.98 -2.39 -0.02 2.32 16 34 H 0.10 3.61 5.46 -5.84 -0.03 3.58 16 35 H 0.42 11.72 8.53 -96.74 -0.83 10.89 16 36 H 0.12 4.88 4.06 -2.91 -0.01 4.87 16 37 H 0.11 6.17 6.15 -2.91 -0.02 6.15 16 38 H 0.28 13.29 8.30 -92.71 -0.77 12.52 16 39 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 40 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 41 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.10 1.92 8.11 -2.39 -0.02 1.90 16 43 H 0.06 1.42 4.94 -2.39 -0.01 1.41 16 44 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -65.67 362.20 1.95 -63.72 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: 0.20 Total: 43.43 kcal Atomic # 6 Polarization: -89.44 SS G_CDS: 3.73 Total: -85.71 kcal Atomic # 7 Polarization: -78.46 SS G_CDS: -0.02 Total: -78.48 kcal Atomic # 8 Polarization: -73.32 SS G_CDS: -3.73 Total: -77.04 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 94.32 SS G_CDS: -0.26 Total: 94.06 kcal Total: -65.67 1.95 -63.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000617575.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.536 kcal (2) G-P(sol) polarization free energy of solvation -65.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds