Wall clock time and date at job start Tue Mar 31 2020 06:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47099 * 240.00306 * 3 2 1 5 5 H 1.48503 * 109.46900 * 120.00032 * 3 2 1 6 6 H 1.48495 * 109.47399 * 0.02562 * 3 2 1 7 7 C 1.38923 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99498 * 155.45314 * 7 2 1 9 9 N 1.37484 * 119.99997 * 335.44338 * 7 2 1 10 10 C 1.37065 * 123.40517 * 150.84233 * 9 7 2 11 11 O 1.21226 * 127.10705 * 347.11243 * 10 9 7 12 12 C 1.49520 * 105.71853 * 167.03714 * 10 9 7 13 13 H 1.08993 * 110.14473 * 278.55675 * 12 10 9 14 14 C 1.55182 * 97.16795 * 32.77697 * 12 10 9 15 15 H 1.08997 * 92.25675 * 59.21462 * 14 12 10 16 16 C 1.37941 * 123.41340 * 331.13846 * 9 7 2 17 17 O 1.21226 * 128.31921 * 345.02312 * 16 9 7 18 18 C 1.47360 * 112.22956 * 161.33694 * 14 12 10 19 19 C 1.52020 * 111.24179 * 27.31657 * 18 14 12 20 20 C 1.36783 * 124.45477 * 130.50198 * 19 18 14 21 21 C 1.38805 * 118.89162 * 177.32672 * 20 19 18 22 22 C 1.38275 * 120.68453 * 359.82495 * 21 20 19 23 23 C 1.39014 * 120.25204 * 1.25651 * 22 21 20 24 24 C 1.36128 * 118.59812 * 359.78072 * 23 22 21 25 25 C 1.52621 * 121.60601 * 146.97258 * 12 10 9 26 26 C 1.52292 * 110.86692 * 279.79115 * 25 12 10 27 27 C 1.37093 * 123.34866 * 130.28781 * 26 25 12 28 28 C 1.38715 * 119.02191 * 172.90192 * 27 26 25 29 29 C 1.38271 * 120.96547 * 0.14959 * 28 27 26 30 30 C 1.39146 * 119.99587 * 1.23938 * 29 28 27 31 31 C 1.35653 * 118.41864 * 359.73441 * 30 29 28 32 32 H 0.97000 * 120.00115 * 174.29463 * 1 2 3 33 33 H 1.09003 * 114.13979 * 158.76767 * 18 14 12 34 34 H 1.07998 * 120.55308 * 357.34650 * 20 19 18 35 35 H 1.08003 * 119.65640 * 179.85305 * 21 20 19 36 36 H 1.08001 * 119.87216 * 181.20667 * 22 21 20 37 37 H 1.08003 * 120.70117 * 179.80380 * 23 22 21 38 38 H 1.09006 * 114.93806 * 51.09203 * 25 12 10 39 39 H 1.07995 * 120.48765 * 352.93157 * 27 26 25 40 40 H 1.08001 * 119.51774 * 180.17057 * 28 27 26 41 41 H 1.07998 * 119.99738 * 181.22329 * 29 28 27 42 42 H 1.07998 * 120.79073 * 179.74600 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.1012 1.6965 -1.2125 5 1 3.1013 1.6964 1.2125 6 1 1.2826 2.7465 0.0006 7 6 2.0081 -1.2031 -0.0005 8 1 3.0149 -1.2452 -0.3891 9 7 1.4139 -2.3401 0.4938 10 6 1.7133 -3.6020 0.0501 11 8 2.3421 -3.8980 -0.9431 12 6 1.1051 -4.5365 1.0463 13 1 1.7578 -4.6378 1.9132 14 6 -0.1219 -3.6592 1.4108 15 1 -0.4764 -3.6508 0.3801 16 6 0.4518 -2.3261 1.4822 17 8 0.1562 -1.4194 2.2306 18 6 -1.1944 -4.4398 2.0528 19 6 -0.6339 -5.6510 2.7806 20 6 -0.9395 -5.9887 4.0704 21 6 -0.4040 -7.1529 4.6037 22 6 0.4220 -7.9618 3.8451 23 6 0.7482 -7.6038 2.5421 24 6 0.2347 -6.4494 2.0355 25 6 0.5515 -5.8972 0.6323 26 6 -0.8409 -5.7564 0.0316 27 6 -1.2071 -6.3213 -1.1627 28 6 -2.5363 -6.2629 -1.5552 29 6 -3.4856 -5.6440 -0.7629 30 6 -3.1085 -5.0455 0.4354 31 6 -1.8022 -5.0930 0.7977 32 1 -0.4850 -0.8359 -0.0835 33 1 -1.8907 -3.8414 2.6403 34 1 -1.5869 -5.3600 4.6638 35 1 -0.6352 -7.4301 5.6217 36 1 0.8158 -8.8747 4.2668 37 1 1.3953 -8.2286 1.9442 38 1 1.2322 -6.5098 0.0411 39 1 -0.4717 -6.8049 -1.7884 40 1 -2.8342 -6.7078 -2.4932 41 1 -4.5195 -5.6249 -1.0742 42 1 -3.8386 -4.5551 1.0621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000991103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:54 Heat of formation + Delta-G solvation = 51.630836 kcal Electronic energy + Delta-G solvation = -30751.675474 eV Core-core repulsion = 26821.562128 eV Total energy + Delta-G solvation = -3930.113346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.115 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.01705 -39.93299 -38.56010 -37.32795 -36.08614 -34.66630 -33.18498 -32.74671 -30.87001 -29.99938 -29.84903 -28.63802 -25.79129 -24.43438 -23.60879 -22.12188 -22.01444 -21.97959 -21.05974 -19.45064 -18.84834 -17.69504 -17.49991 -16.43018 -16.18680 -15.86311 -15.18835 -14.88108 -14.76335 -14.54234 -14.38382 -14.09415 -14.01786 -13.83196 -13.69889 -13.39662 -13.11546 -12.96987 -12.89277 -12.47195 -12.21874 -12.13261 -11.87812 -11.59803 -11.47004 -11.25629 -11.04762 -10.99241 -10.75719 -10.25414 -10.19563 -9.99476 -9.61974 -9.23569 -9.13573 -8.83742 -8.78751 -8.66743 -8.34826 -8.24659 -6.85309 -4.25583 1.13968 1.32298 1.45895 1.56674 2.44994 3.24797 3.32276 3.50639 3.54228 3.63124 3.75773 3.85989 4.11447 4.21233 4.37849 4.62563 4.69766 4.76739 4.85955 4.92841 4.94723 4.97140 5.01627 5.09691 5.17473 5.29415 5.34513 5.39169 5.51780 5.63409 5.66276 5.70667 5.75476 5.78197 5.83945 5.98707 6.02506 6.05959 6.15690 6.40700 6.44835 6.47462 6.50274 6.54840 6.78967 6.92073 7.03394 7.43201 7.59053 8.21582 8.25039 8.45925 9.04895 9.40109 10.46206 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.004670 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.050235 B = 5994.796766 C = 6663.429829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.029 3.971 3 Si 1.084 2.916 4 H -0.281 1.281 5 H -0.280 1.280 6 H -0.276 1.276 7 C -0.439 4.439 8 H 0.096 0.904 9 N -0.435 5.435 10 C 0.499 3.501 11 O -0.503 6.503 12 C -0.115 4.115 13 H 0.112 0.888 14 C -0.166 4.166 15 H 0.091 0.909 16 C 0.533 3.467 17 O -0.466 6.466 18 C 0.040 3.960 19 C -0.069 4.069 20 C -0.102 4.102 21 C -0.123 4.123 22 C -0.122 4.122 23 C -0.106 4.106 24 C -0.080 4.080 25 C 0.019 3.981 26 C -0.081 4.081 27 C -0.101 4.101 28 C -0.124 4.124 29 C -0.118 4.118 30 C -0.104 4.104 31 C -0.082 4.082 32 H 0.270 0.730 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.393 -15.856 4.707 17.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.184 4.184 3 Si 0.908 3.092 4 H -0.207 1.207 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.564 4.564 8 H 0.114 0.886 9 N -0.168 5.168 10 C 0.290 3.710 11 O -0.379 6.379 12 C -0.137 4.137 13 H 0.130 0.870 14 C -0.188 4.188 15 H 0.109 0.891 16 C 0.324 3.676 17 O -0.338 6.338 18 C 0.021 3.979 19 C -0.069 4.069 20 C -0.120 4.120 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.080 4.080 25 C 0.000 4.000 26 C -0.081 4.081 27 C -0.119 4.119 28 C -0.143 4.143 29 C -0.136 4.136 30 C -0.122 4.122 31 C -0.082 4.082 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.145 0.855 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.433 -13.851 4.604 15.574 hybrid contribution 0.160 -1.711 -0.233 1.734 sum -5.273 -15.562 4.371 17.002 Atomic orbital electron populations 1.70675 1.07357 1.30972 1.37280 1.26579 0.95868 1.02947 0.93030 0.83308 0.74969 0.73712 0.77165 1.20724 1.20555 1.20084 1.20402 1.01390 0.86457 1.48149 0.88624 1.44341 1.35423 1.07398 1.29639 1.20506 0.81848 0.83696 0.84964 1.90565 1.40512 1.80740 1.26087 1.22267 0.97291 0.94042 1.00073 0.87022 1.20894 0.97505 0.95685 1.04683 0.89142 1.18793 0.81825 0.87293 0.79667 1.90644 1.62438 1.42921 1.37754 1.18608 0.94925 0.91524 0.92863 1.19877 0.97274 0.95734 0.94053 1.20654 1.00229 0.96923 0.94149 1.21190 0.98154 0.95028 0.99779 1.21260 0.98677 0.99749 0.94280 1.20490 1.00369 0.95926 0.95636 1.20399 0.97229 0.94890 0.95464 1.20042 0.92969 0.94685 0.92284 1.20089 0.94493 0.98562 0.94963 1.20765 0.96145 0.99492 0.95535 1.21168 0.93073 1.00229 0.99781 1.21313 0.99424 0.98138 0.94682 1.20351 0.94667 1.00100 0.97067 1.20470 0.93587 0.98351 0.95759 0.91895 0.86380 0.85489 0.86164 0.86120 0.85531 0.86100 0.85547 0.86156 0.85904 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.65 12.29 55.49 0.68 -23.97 16 2 C 0.03 0.80 4.73 -17.50 -0.08 0.72 16 3 Si 1.08 24.60 29.99 -169.99 -5.10 19.51 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.44 -12.51 9.58 -14.76 -0.14 -12.65 16 8 H 0.10 2.72 7.94 -52.49 -0.42 2.30 16 9 N -0.44 -11.43 2.68 -61.46 -0.16 -11.60 16 10 C 0.50 11.80 7.30 -10.50 -0.08 11.73 16 11 O -0.50 -12.91 17.84 5.60 0.10 -12.81 16 12 C -0.12 -2.15 2.39 -91.38 -0.22 -2.37 16 13 H 0.11 2.00 7.66 -51.93 -0.40 1.60 16 14 C -0.17 -3.27 3.22 -95.80 -0.31 -3.58 16 15 H 0.09 1.93 4.34 -51.93 -0.23 1.70 16 16 C 0.53 13.24 5.92 -11.99 -0.07 13.17 16 17 O -0.47 -12.87 16.17 5.60 0.09 -12.78 16 18 C 0.04 0.63 4.25 -93.32 -0.40 0.23 16 19 C -0.07 -0.99 4.79 -104.01 -0.50 -1.49 16 20 C -0.10 -1.25 9.95 -39.90 -0.40 -1.64 16 21 C -0.12 -1.33 10.03 -39.36 -0.39 -1.73 16 22 C -0.12 -1.29 10.06 -39.28 -0.40 -1.68 16 23 C -0.11 -1.25 9.96 -40.05 -0.40 -1.65 16 24 C -0.08 -1.11 4.22 -103.18 -0.44 -1.55 16 25 C 0.02 0.29 4.22 -90.61 -0.38 -0.09 16 26 C -0.08 -1.26 4.24 -103.71 -0.44 -1.70 16 27 C -0.10 -1.42 9.91 -39.82 -0.39 -1.81 16 28 C -0.12 -1.57 10.01 -39.39 -0.39 -1.96 16 29 C -0.12 -1.46 10.08 -39.23 -0.40 -1.85 16 30 C -0.10 -1.42 9.99 -40.17 -0.40 -1.82 16 31 C -0.08 -1.26 4.03 -103.34 -0.42 -1.67 16 32 H 0.27 8.10 6.91 -40.82 -0.28 7.82 16 33 H 0.12 1.73 8.14 -51.93 -0.42 1.31 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 38 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 346.76 15.07 5.23 5.23 Total: -1.00 -34.24 346.76 -10.15 -44.38 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.35 Total: 5.43 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -6.64 Total: -13.39 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.52 Total: -35.57 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: 0.19 Total: -25.59 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.10 Total: 19.51 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.24 -10.15 -44.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000991103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.014 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds