Wall clock time and date at job start Tue Mar 31 2020 06:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31354 * 1 3 3 Si 1.86802 * 119.99940 * 2 1 4 4 H 1.48501 * 109.47099 * 240.00306 * 3 2 1 5 5 H 1.48503 * 109.46900 * 120.00032 * 3 2 1 6 6 H 1.48495 * 109.47399 * 0.02562 * 3 2 1 7 7 C 1.38923 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99498 * 155.45314 * 7 2 1 9 9 N 1.37484 * 119.99997 * 335.44338 * 7 2 1 10 10 C 1.37065 * 123.40517 * 150.84233 * 9 7 2 11 11 O 1.21226 * 127.10705 * 347.11243 * 10 9 7 12 12 C 1.49520 * 105.71853 * 167.03714 * 10 9 7 13 13 H 1.08993 * 110.14473 * 278.55675 * 12 10 9 14 14 C 1.55182 * 97.16795 * 32.77697 * 12 10 9 15 15 H 1.08997 * 92.25675 * 59.21462 * 14 12 10 16 16 C 1.37941 * 123.41340 * 331.13846 * 9 7 2 17 17 O 1.21226 * 128.31921 * 345.02312 * 16 9 7 18 18 C 1.47360 * 112.22956 * 161.33694 * 14 12 10 19 19 C 1.52020 * 111.24179 * 27.31657 * 18 14 12 20 20 C 1.36783 * 124.45477 * 130.50198 * 19 18 14 21 21 C 1.38805 * 118.89162 * 177.32672 * 20 19 18 22 22 C 1.38275 * 120.68453 * 359.82495 * 21 20 19 23 23 C 1.39014 * 120.25204 * 1.25651 * 22 21 20 24 24 C 1.36128 * 118.59812 * 359.78072 * 23 22 21 25 25 C 1.52621 * 121.60601 * 146.97258 * 12 10 9 26 26 C 1.52292 * 110.86692 * 279.79115 * 25 12 10 27 27 C 1.37093 * 123.34866 * 130.28781 * 26 25 12 28 28 C 1.38715 * 119.02191 * 172.90192 * 27 26 25 29 29 C 1.38271 * 120.96547 * 0.14959 * 28 27 26 30 30 C 1.39146 * 119.99587 * 1.23938 * 29 28 27 31 31 C 1.35653 * 118.41864 * 359.73441 * 30 29 28 32 32 H 0.97000 * 120.00115 * 174.29463 * 1 2 3 33 33 H 1.09003 * 114.13979 * 158.76767 * 18 14 12 34 34 H 1.07998 * 120.55308 * 357.34650 * 20 19 18 35 35 H 1.08003 * 119.65640 * 179.85305 * 21 20 19 36 36 H 1.08001 * 119.87216 * 181.20667 * 22 21 20 37 37 H 1.08003 * 120.70117 * 179.80380 * 23 22 21 38 38 H 1.09006 * 114.93806 * 51.09203 * 25 12 10 39 39 H 1.07995 * 120.48765 * 352.93157 * 27 26 25 40 40 H 1.08001 * 119.51774 * 180.17057 * 28 27 26 41 41 H 1.07998 * 119.99738 * 181.22329 * 29 28 27 42 42 H 1.07998 * 120.79073 * 179.74600 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 3.1012 1.6965 -1.2125 5 1 3.1013 1.6964 1.2125 6 1 1.2826 2.7465 0.0006 7 6 2.0081 -1.2031 -0.0005 8 1 3.0149 -1.2452 -0.3891 9 7 1.4139 -2.3401 0.4938 10 6 1.7133 -3.6020 0.0501 11 8 2.3421 -3.8980 -0.9431 12 6 1.1051 -4.5365 1.0463 13 1 1.7578 -4.6378 1.9132 14 6 -0.1219 -3.6592 1.4108 15 1 -0.4764 -3.6508 0.3801 16 6 0.4518 -2.3261 1.4822 17 8 0.1562 -1.4194 2.2306 18 6 -1.1944 -4.4398 2.0528 19 6 -0.6339 -5.6510 2.7806 20 6 -0.9395 -5.9887 4.0704 21 6 -0.4040 -7.1529 4.6037 22 6 0.4220 -7.9618 3.8451 23 6 0.7482 -7.6038 2.5421 24 6 0.2347 -6.4494 2.0355 25 6 0.5515 -5.8972 0.6323 26 6 -0.8409 -5.7564 0.0316 27 6 -1.2071 -6.3213 -1.1627 28 6 -2.5363 -6.2629 -1.5552 29 6 -3.4856 -5.6440 -0.7629 30 6 -3.1085 -5.0455 0.4354 31 6 -1.8022 -5.0930 0.7977 32 1 -0.4850 -0.8359 -0.0835 33 1 -1.8907 -3.8414 2.6403 34 1 -1.5869 -5.3600 4.6638 35 1 -0.6352 -7.4301 5.6217 36 1 0.8158 -8.8747 4.2668 37 1 1.3953 -8.2286 1.9442 38 1 1.2322 -6.5098 0.0411 39 1 -0.4717 -6.8049 -1.7884 40 1 -2.8342 -6.7078 -2.4932 41 1 -4.5195 -5.6249 -1.0742 42 1 -3.8386 -4.5551 1.0621 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000991103.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:53 Heat of formation + Delta-G solvation = 33.037446 kcal Electronic energy + Delta-G solvation = -30752.481744 eV Core-core repulsion = 26821.562128 eV Total energy + Delta-G solvation = -3930.919616 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.115 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -44.44971 -41.50657 -39.50859 -39.35287 -37.44053 -36.65632 -34.63209 -34.29963 -31.82662 -31.56613 -30.90582 -29.78559 -27.44319 -26.08806 -25.19725 -23.17914 -23.10381 -23.08067 -22.41929 -21.28786 -20.12939 -19.65006 -19.04531 -17.69592 -17.50411 -17.49175 -16.53016 -16.25086 -16.18287 -15.84068 -15.64824 -15.63712 -15.52163 -15.41172 -15.19228 -14.66088 -14.54333 -14.27198 -14.02092 -14.00603 -13.59861 -13.30536 -13.12206 -12.95922 -12.88495 -12.57954 -12.50643 -12.24242 -12.02234 -11.99108 -11.80160 -11.56872 -11.32004 -11.05763 -10.91592 -10.40312 -9.90364 -9.79521 -9.76545 -9.35244 -9.08998 -6.50263 0.12621 0.34798 0.49491 0.50317 0.60103 1.38844 1.45807 1.71575 1.75498 1.95778 2.42147 2.52635 2.70594 2.75919 2.86309 2.97680 3.30898 3.45245 3.60038 3.69754 3.79836 3.80984 3.85296 4.02304 4.05236 4.18386 4.22498 4.30487 4.36928 4.42005 4.42946 4.52706 4.68508 4.77632 4.78635 4.86256 5.04659 5.05230 5.18611 5.28008 5.44285 5.46009 5.50371 5.52634 5.54255 5.61003 5.75365 5.99022 6.04044 6.09748 6.12331 6.49891 6.90605 7.33760 8.22383 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012447 B = 0.004670 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.050235 B = 5994.796766 C = 6663.429829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C -0.012 4.012 3 Si 1.129 2.871 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.273 1.273 7 C -0.467 4.467 8 H 0.086 0.914 9 N -0.460 5.460 10 C 0.497 3.503 11 O -0.528 6.528 12 C -0.096 4.096 13 H 0.121 0.879 14 C -0.146 4.146 15 H 0.073 0.927 16 C 0.528 3.472 17 O -0.504 6.504 18 C 0.039 3.961 19 C -0.089 4.089 20 C -0.109 4.109 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.108 4.108 24 C -0.093 4.093 25 C 0.022 3.978 26 C -0.105 4.105 27 C -0.114 4.114 28 C -0.127 4.127 29 C -0.117 4.117 30 C -0.115 4.115 31 C -0.098 4.098 32 H 0.254 0.746 33 H 0.123 0.877 34 H 0.139 0.861 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -18.326 5.572 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.219 4.219 3 Si 0.945 3.055 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.198 1.198 7 C -0.592 4.592 8 H 0.103 0.897 9 N -0.194 5.194 10 C 0.290 3.710 11 O -0.405 6.405 12 C -0.117 4.117 13 H 0.139 0.861 14 C -0.168 4.168 15 H 0.091 0.909 16 C 0.322 3.678 17 O -0.378 6.378 18 C 0.021 3.979 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.125 4.125 24 C -0.093 4.093 25 C 0.004 3.996 26 C -0.105 4.105 27 C -0.131 4.131 28 C -0.145 4.145 29 C -0.135 4.135 30 C -0.132 4.132 31 C -0.098 4.098 32 H 0.064 0.936 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.165 0.835 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.170 0.830 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.980 -16.366 5.459 18.259 hybrid contribution 0.324 -1.057 -0.506 1.216 sum -5.655 -17.423 4.954 18.976 Atomic orbital electron populations 1.70800 1.08199 1.29888 1.39869 1.28141 0.95916 1.06279 0.91542 0.82818 0.74320 0.69720 0.78596 1.18100 1.19377 1.19761 1.20581 1.01429 0.88046 1.49177 0.89660 1.44686 1.36329 1.07903 1.30458 1.21333 0.80500 0.83978 0.85183 1.90526 1.41384 1.81213 1.27400 1.22259 0.96263 0.94998 0.98180 0.86119 1.20807 0.98682 0.93059 1.04204 0.90949 1.19506 0.80990 0.88843 0.78470 1.90592 1.63361 1.44714 1.39142 1.18636 0.93646 0.91798 0.93867 1.19815 0.98595 0.95387 0.95063 1.20914 1.00468 0.97830 0.93441 1.21565 0.97220 0.94051 1.01082 1.21663 0.97707 1.00550 0.93579 1.20807 1.00048 0.95210 0.96460 1.20302 0.98441 0.96145 0.94452 1.20076 0.93180 0.92370 0.94004 1.20243 0.94542 0.99776 0.95901 1.21066 0.97350 0.99538 0.95186 1.21550 0.92494 0.99682 1.00759 1.21705 1.00965 0.96963 0.93885 1.20691 0.94456 1.00173 0.97911 1.20522 0.94468 0.99189 0.95664 0.93636 0.85925 0.84271 0.83314 0.83001 0.83489 0.84712 0.84284 0.83384 0.82954 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -52.81 12.29 21.65 0.27 -52.54 16 2 C -0.01 -0.72 4.73 84.93 0.40 -0.31 16 3 Si 1.13 50.37 29.99 68.60 2.06 52.43 16 4 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.47 -27.82 9.58 83.97 0.80 -27.02 16 8 H 0.09 5.09 7.94 -2.91 -0.02 5.06 16 9 N -0.46 -25.34 2.68 -582.00 -1.56 -26.90 16 10 C 0.50 24.42 7.30 86.92 0.63 25.05 16 11 O -0.53 -27.99 17.84 -2.86 -0.05 -28.04 16 12 C -0.10 -3.63 2.39 -11.28 -0.03 -3.66 16 13 H 0.12 4.36 7.66 -2.39 -0.02 4.34 16 14 C -0.15 -5.94 3.22 -14.15 -0.05 -5.99 16 15 H 0.07 3.23 4.34 -2.39 -0.01 3.22 16 16 C 0.53 27.53 5.92 85.55 0.51 28.04 16 17 O -0.50 -29.22 16.17 -2.86 -0.05 -29.26 16 18 C 0.04 1.26 4.25 -12.54 -0.05 1.20 16 19 C -0.09 -2.43 4.79 -19.47 -0.09 -2.52 16 20 C -0.11 -2.44 9.95 22.06 0.22 -2.22 16 21 C -0.12 -2.18 10.03 22.41 0.22 -1.95 16 22 C -0.12 -2.02 10.06 22.46 0.23 -1.79 16 23 C -0.11 -2.21 9.96 21.96 0.22 -1.99 16 24 C -0.09 -2.45 4.22 -18.93 -0.08 -2.53 16 25 C 0.02 0.67 4.22 -10.79 -0.05 0.62 16 26 C -0.10 -3.19 4.24 -19.27 -0.08 -3.28 16 27 C -0.11 -3.05 9.91 22.11 0.22 -2.83 16 28 C -0.13 -2.94 10.01 22.39 0.22 -2.71 16 29 C -0.12 -2.67 10.08 22.50 0.23 -2.45 16 30 C -0.11 -3.01 9.99 21.89 0.22 -2.80 16 31 C -0.10 -3.00 4.03 -19.03 -0.08 -3.08 16 32 H 0.25 16.07 6.91 -92.71 -0.64 15.43 16 33 H 0.12 3.67 8.14 -2.39 -0.02 3.66 16 34 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 38 H 0.14 3.57 8.14 -2.38 -0.02 3.55 16 39 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -78.65 346.76 5.49 -73.16 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 1.20 Total: 23.37 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 3.62 Total: -12.21 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -1.29 Total: -79.44 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -0.10 Total: -57.31 kcal Atomic # 14 Polarization: 50.37 SS G_CDS: 2.06 Total: 52.43 kcal Total: -78.65 5.49 -73.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000991103.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.197 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds