Wall clock time and date at job start Tue Mar 31 2020 06:35:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31358 * 1 3 3 Si 1.86793 * 120.00180 * 2 1 4 4 H 1.48504 * 109.47156 * 90.00263 * 3 2 1 5 5 H 1.48492 * 109.47221 * 330.00151 * 3 2 1 6 6 H 1.48506 * 109.47313 * 209.99974 * 3 2 1 7 7 C 1.38930 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 203.54002 * 7 2 1 9 9 N 1.37496 * 119.99822 * 23.53653 * 7 2 1 10 10 C 1.36538 * 123.20436 * 30.16424 * 9 7 2 11 11 O 1.21227 * 127.00503 * 19.19652 * 10 9 7 12 12 C 1.52647 * 106.08904 * 199.08025 * 10 9 7 13 13 H 1.08995 * 113.88047 * 85.57432 * 12 10 9 14 14 C 1.55495 * 94.85291 * 325.61664 * 12 10 9 15 15 H 1.09002 * 86.26556 * 306.28902 * 14 12 10 16 16 C 1.37372 * 123.20023 * 210.44754 * 9 7 2 17 17 O 1.21217 * 128.31595 * 7.92144 * 16 9 7 18 18 C 1.48114 * 116.22648 * 212.88910 * 14 12 10 19 19 C 1.52879 * 108.77622 * 330.74262 * 18 14 12 20 20 C 1.36715 * 123.92556 * 227.95189 * 19 18 14 21 21 C 1.38835 * 118.85598 * 183.69282 * 20 19 18 22 22 C 1.38263 * 120.64521 * 359.94693 * 21 20 19 23 23 C 1.38985 * 120.29971 * 359.31586 * 22 21 20 24 24 C 1.36213 * 118.65988 * 0.18150 * 23 22 21 25 25 C 1.53057 * 125.03288 * 181.38525 * 24 23 22 26 26 C 1.50880 * 102.77131 * 236.53096 * 25 24 23 27 27 C 1.37248 * 124.13159 * 127.47586 * 26 25 24 28 28 C 1.38638 * 119.16975 * 183.63227 * 27 26 25 29 29 C 1.38287 * 120.94555 * 0.18404 * 28 27 26 30 30 C 1.39099 * 119.92173 * 358.34014 * 29 28 27 31 31 C 1.35765 * 118.49763 * 0.23606 * 30 29 28 32 32 H 0.96998 * 120.00393 * 185.75674 * 1 2 3 33 33 H 1.09001 * 115.00407 * 200.40355 * 18 14 12 34 34 H 1.08001 * 120.56760 * 3.71246 * 20 19 18 35 35 H 1.08001 * 119.67665 * 179.97438 * 21 20 19 36 36 H 1.07992 * 119.85516 * 179.31030 * 22 21 20 37 37 H 1.07998 * 120.67201 * 180.18249 * 23 22 21 38 38 H 1.09008 * 113.46942 * 359.66374 * 25 24 23 39 39 H 1.07995 * 120.41436 * 3.66484 * 27 26 25 40 40 H 1.07998 * 119.52930 * 180.16151 * 28 27 26 41 41 H 1.07995 * 120.03753 * 178.35956 * 29 28 27 42 42 H 1.08004 * 120.74972 * 180.21315 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6176 0.0000 4 1 2.4952 2.0463 1.4001 5 1 1.4451 2.6526 -0.7000 6 1 3.5452 1.4401 -0.7001 7 6 2.0082 -1.2032 -0.0005 8 1 3.0207 -1.2423 0.3730 9 7 1.4064 -2.3442 -0.4766 10 6 0.4579 -2.3352 -1.4587 11 8 0.2415 -1.4481 -2.2560 12 6 -0.2741 -3.6705 -1.3520 13 1 -1.0910 -3.6694 -0.6303 14 6 0.9830 -4.4752 -0.9160 15 1 1.4635 -4.0696 -1.8064 16 6 1.6982 -3.6011 -0.0054 17 8 2.3873 -3.9067 0.9439 18 6 1.0500 -5.8826 -1.3726 19 6 -0.3735 -6.4193 -1.5233 20 6 -0.7943 -7.6184 -1.0191 21 6 -2.0906 -8.0389 -1.2841 22 6 -2.9431 -7.2592 -2.0437 23 6 -2.5160 -6.0338 -2.5415 24 6 -1.2459 -5.6245 -2.2681 25 6 -0.6362 -4.2937 -2.7154 26 6 0.5873 -4.7288 -3.4836 27 6 0.8799 -4.3211 -4.7611 28 6 1.9941 -4.8444 -5.3989 29 6 2.8059 -5.7691 -4.7678 30 6 2.5277 -6.1599 -3.4621 31 6 1.4498 -5.6179 -2.8395 32 1 -0.4851 -0.8358 0.0843 33 1 1.7211 -6.5217 -0.7987 34 1 -0.1298 -8.2278 -0.4246 35 1 -2.4367 -8.9841 -0.8926 36 1 -3.9452 -7.6038 -2.2514 37 1 -3.1777 -5.4186 -3.1330 38 1 -1.3208 -3.6763 -3.2972 39 1 0.2504 -3.6013 -5.2629 40 1 2.2312 -4.5257 -6.4031 41 1 3.6550 -6.1871 -5.2879 42 1 3.1548 -6.8784 -2.9553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000991106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:00 Heat of formation + Delta-G solvation = 73.095973 kcal Electronic energy + Delta-G solvation = -30828.509022 eV Core-core repulsion = 26899.326473 eV Total energy + Delta-G solvation = -3929.182548 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.115 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.22065 -39.90657 -38.57152 -37.33901 -36.08156 -34.69231 -33.17041 -32.70660 -30.87776 -30.01866 -29.82743 -28.60835 -25.73856 -24.36542 -23.62032 -22.14903 -22.06313 -21.93214 -21.10744 -19.56520 -18.64114 -17.68542 -17.49761 -16.43142 -16.24411 -15.81696 -15.21425 -14.87058 -14.77325 -14.55267 -14.37145 -14.08396 -14.00940 -13.80844 -13.71480 -13.40040 -13.13792 -12.98870 -12.86672 -12.52475 -12.22921 -12.17958 -11.82274 -11.58279 -11.43747 -11.18605 -11.04565 -10.98461 -10.75171 -10.26505 -10.21232 -9.94274 -9.55622 -9.23668 -9.14534 -8.84445 -8.76790 -8.70132 -8.35303 -8.16297 -6.85872 -4.27070 1.13197 1.32210 1.44355 1.54686 2.41525 3.22253 3.33805 3.45660 3.52624 3.63183 3.79723 3.85765 3.99349 4.25482 4.35290 4.61503 4.62779 4.71851 4.85019 4.93885 4.94308 4.94994 5.01205 5.07565 5.16586 5.26839 5.35911 5.38680 5.51147 5.60030 5.66503 5.69909 5.74640 5.76470 5.83619 5.98084 6.01930 6.07236 6.15491 6.41072 6.44893 6.45671 6.49474 6.53658 6.78100 6.92084 7.02207 7.43117 7.61888 8.20126 8.26985 8.44377 9.05122 9.39696 10.46511 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.004721 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.891622 B = 5929.473959 C = 6554.662382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.030 3.970 3 Si 1.085 2.915 4 H -0.282 1.282 5 H -0.276 1.276 6 H -0.281 1.281 7 C -0.438 4.438 8 H 0.094 0.906 9 N -0.439 5.439 10 C 0.494 3.506 11 O -0.466 6.466 12 C -0.091 4.091 13 H 0.127 0.873 14 C -0.204 4.204 15 H 0.092 0.908 16 C 0.543 3.457 17 O -0.499 6.499 18 C 0.049 3.951 19 C -0.070 4.070 20 C -0.104 4.104 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.104 4.104 24 C -0.077 4.077 25 C 0.006 3.994 26 C -0.080 4.080 27 C -0.095 4.095 28 C -0.124 4.124 29 C -0.117 4.117 30 C -0.109 4.109 31 C -0.086 4.086 32 H 0.271 0.729 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.920 -15.169 -8.342 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.182 4.182 3 Si 0.910 3.090 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.206 1.206 7 C -0.563 4.563 8 H 0.112 0.888 9 N -0.172 5.172 10 C 0.284 3.716 11 O -0.338 6.338 12 C -0.113 4.113 13 H 0.144 0.856 14 C -0.226 4.226 15 H 0.109 0.891 16 C 0.336 3.664 17 O -0.376 6.376 18 C 0.030 3.970 19 C -0.070 4.070 20 C -0.122 4.122 21 C -0.142 4.142 22 C -0.140 4.140 23 C -0.122 4.122 24 C -0.077 4.077 25 C -0.013 4.013 26 C -0.080 4.080 27 C -0.113 4.113 28 C -0.142 4.142 29 C -0.135 4.135 30 C -0.126 4.126 31 C -0.086 4.086 32 H 0.082 0.918 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.843 -13.126 -8.424 15.853 hybrid contribution 0.162 -1.614 0.053 1.623 sum -2.681 -14.740 -8.371 17.162 Atomic orbital electron populations 1.70658 1.07331 1.30960 1.37970 1.26563 0.95899 1.02871 0.92868 0.83301 0.74970 0.73610 0.77160 1.20804 1.20093 1.20635 1.20394 1.00931 0.86366 1.48605 0.88794 1.44020 1.36475 1.07310 1.29407 1.21178 0.82648 0.87476 0.80287 1.90621 1.66967 1.40621 1.35607 1.23263 0.97578 0.93340 0.97101 0.85567 1.21515 1.00304 0.96153 1.04590 0.89052 1.18619 0.82054 0.83385 0.82388 1.90573 1.40124 1.80235 1.26636 1.19023 0.93873 0.93006 0.91060 1.20066 0.94463 0.94745 0.97724 1.20645 0.96215 0.95488 0.99814 1.21192 0.93832 0.99902 0.99238 1.21241 0.99569 0.94696 0.98457 1.20494 0.94882 0.96527 1.00315 1.20142 0.94186 0.95466 0.97912 1.19916 0.94649 0.92991 0.93728 1.19718 0.95853 0.97586 0.94876 1.20786 0.97513 0.98912 0.94097 1.21166 0.95166 0.97674 1.00204 1.21319 0.99462 0.97914 0.94755 1.20378 0.97009 1.00317 0.94942 1.20728 0.95826 0.96677 0.95368 0.91827 0.85950 0.85559 0.86200 0.86121 0.85532 0.86631 0.85413 0.86033 0.85849 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.60 12.41 55.49 0.69 -23.91 16 2 C 0.03 0.85 4.71 -17.50 -0.08 0.76 16 3 Si 1.09 24.70 29.98 -169.99 -5.10 19.61 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.44 -12.51 9.57 -14.75 -0.14 -12.65 16 8 H 0.09 2.69 7.93 -52.49 -0.42 2.28 16 9 N -0.44 -11.56 2.64 -60.69 -0.16 -11.72 16 10 C 0.49 12.08 4.69 -9.21 -0.04 12.04 16 11 O -0.47 -12.63 16.30 5.60 0.09 -12.54 16 12 C -0.09 -1.74 3.42 -88.83 -0.30 -2.05 16 13 H 0.13 2.33 8.07 -51.93 -0.42 1.91 16 14 C -0.20 -3.93 3.74 -95.38 -0.36 -4.29 16 15 H 0.09 1.87 2.75 -51.93 -0.14 1.73 16 16 C 0.54 13.09 7.78 -12.36 -0.10 12.99 16 17 O -0.50 -13.01 17.88 5.61 0.10 -12.91 16 18 C 0.05 0.75 4.46 -92.36 -0.41 0.34 16 19 C -0.07 -0.99 4.84 -103.59 -0.50 -1.49 16 20 C -0.10 -1.24 9.94 -39.91 -0.40 -1.64 16 21 C -0.12 -1.32 10.03 -39.35 -0.39 -1.72 16 22 C -0.12 -1.31 10.06 -39.30 -0.40 -1.70 16 23 C -0.10 -1.27 9.97 -40.03 -0.40 -1.67 16 24 C -0.08 -1.09 4.51 -103.68 -0.47 -1.56 16 25 C 0.01 0.09 3.60 -91.01 -0.33 -0.24 16 26 C -0.08 -1.28 4.06 -104.38 -0.42 -1.70 16 27 C -0.10 -1.39 9.93 -39.79 -0.40 -1.79 16 28 C -0.12 -1.60 10.01 -39.42 -0.39 -1.99 16 29 C -0.12 -1.44 10.09 -39.24 -0.40 -1.83 16 30 C -0.11 -1.45 9.97 -40.15 -0.40 -1.85 16 31 C -0.09 -1.32 4.05 -103.14 -0.42 -1.73 16 32 H 0.27 7.96 6.92 -40.82 -0.28 7.68 16 33 H 0.12 1.66 8.14 -51.93 -0.42 1.23 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 38 H 0.12 1.74 8.14 -51.92 -0.42 1.31 16 39 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 42 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 346.37 15.07 5.22 5.22 Total: -1.00 -34.22 346.37 -10.19 -44.40 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -4.28 Total: 5.62 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -6.75 Total: -13.77 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.53 Total: -35.63 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.19 Total: -25.45 kcal Atomic # 14 Polarization: 24.70 SS G_CDS: -5.10 Total: 19.61 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.22 -10.19 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000991106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.501 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds