Wall clock time and date at job start Tue Mar 31 2020 06:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31358 * 1 3 3 Si 1.86793 * 120.00180 * 2 1 4 4 H 1.48504 * 109.47156 * 90.00263 * 3 2 1 5 5 H 1.48492 * 109.47221 * 330.00151 * 3 2 1 6 6 H 1.48506 * 109.47313 * 209.99974 * 3 2 1 7 7 C 1.38930 * 119.99732 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00074 * 203.54002 * 7 2 1 9 9 N 1.37496 * 119.99822 * 23.53653 * 7 2 1 10 10 C 1.36538 * 123.20436 * 30.16424 * 9 7 2 11 11 O 1.21227 * 127.00503 * 19.19652 * 10 9 7 12 12 C 1.52647 * 106.08904 * 199.08025 * 10 9 7 13 13 H 1.08995 * 113.88047 * 85.57432 * 12 10 9 14 14 C 1.55495 * 94.85291 * 325.61664 * 12 10 9 15 15 H 1.09002 * 86.26556 * 306.28902 * 14 12 10 16 16 C 1.37372 * 123.20023 * 210.44754 * 9 7 2 17 17 O 1.21217 * 128.31595 * 7.92144 * 16 9 7 18 18 C 1.48114 * 116.22648 * 212.88910 * 14 12 10 19 19 C 1.52879 * 108.77622 * 330.74262 * 18 14 12 20 20 C 1.36715 * 123.92556 * 227.95189 * 19 18 14 21 21 C 1.38835 * 118.85598 * 183.69282 * 20 19 18 22 22 C 1.38263 * 120.64521 * 359.94693 * 21 20 19 23 23 C 1.38985 * 120.29971 * 359.31586 * 22 21 20 24 24 C 1.36213 * 118.65988 * 0.18150 * 23 22 21 25 25 C 1.53057 * 125.03288 * 181.38525 * 24 23 22 26 26 C 1.50880 * 102.77131 * 236.53096 * 25 24 23 27 27 C 1.37248 * 124.13159 * 127.47586 * 26 25 24 28 28 C 1.38638 * 119.16975 * 183.63227 * 27 26 25 29 29 C 1.38287 * 120.94555 * 0.18404 * 28 27 26 30 30 C 1.39099 * 119.92173 * 358.34014 * 29 28 27 31 31 C 1.35765 * 118.49763 * 0.23606 * 30 29 28 32 32 H 0.96998 * 120.00393 * 185.75674 * 1 2 3 33 33 H 1.09001 * 115.00407 * 200.40355 * 18 14 12 34 34 H 1.08001 * 120.56760 * 3.71246 * 20 19 18 35 35 H 1.08001 * 119.67665 * 179.97438 * 21 20 19 36 36 H 1.07992 * 119.85516 * 179.31030 * 22 21 20 37 37 H 1.07998 * 120.67201 * 180.18249 * 23 22 21 38 38 H 1.09008 * 113.46942 * 359.66374 * 25 24 23 39 39 H 1.07995 * 120.41436 * 3.66484 * 27 26 25 40 40 H 1.07998 * 119.52930 * 180.16151 * 28 27 26 41 41 H 1.07995 * 120.03753 * 178.35956 * 29 28 27 42 42 H 1.08004 * 120.74972 * 180.21315 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6176 0.0000 4 1 2.4952 2.0463 1.4001 5 1 1.4451 2.6526 -0.7000 6 1 3.5452 1.4401 -0.7001 7 6 2.0082 -1.2032 -0.0005 8 1 3.0207 -1.2423 0.3730 9 7 1.4064 -2.3442 -0.4766 10 6 0.4579 -2.3352 -1.4587 11 8 0.2415 -1.4481 -2.2560 12 6 -0.2741 -3.6705 -1.3520 13 1 -1.0910 -3.6694 -0.6303 14 6 0.9830 -4.4752 -0.9160 15 1 1.4635 -4.0696 -1.8064 16 6 1.6982 -3.6011 -0.0054 17 8 2.3873 -3.9067 0.9439 18 6 1.0500 -5.8826 -1.3726 19 6 -0.3735 -6.4193 -1.5233 20 6 -0.7943 -7.6184 -1.0191 21 6 -2.0906 -8.0389 -1.2841 22 6 -2.9431 -7.2592 -2.0437 23 6 -2.5160 -6.0338 -2.5415 24 6 -1.2459 -5.6245 -2.2681 25 6 -0.6362 -4.2937 -2.7154 26 6 0.5873 -4.7288 -3.4836 27 6 0.8799 -4.3211 -4.7611 28 6 1.9941 -4.8444 -5.3989 29 6 2.8059 -5.7691 -4.7678 30 6 2.5277 -6.1599 -3.4621 31 6 1.4498 -5.6179 -2.8395 32 1 -0.4851 -0.8358 0.0843 33 1 1.7211 -6.5217 -0.7987 34 1 -0.1298 -8.2278 -0.4246 35 1 -2.4367 -8.9841 -0.8926 36 1 -3.9452 -7.6038 -2.2514 37 1 -3.1777 -5.4186 -3.1330 38 1 -1.3208 -3.6763 -3.2972 39 1 0.2504 -3.6013 -5.2629 40 1 2.2312 -4.5257 -6.4031 41 1 3.6550 -6.1871 -5.2879 42 1 3.1548 -6.8784 -2.9553 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000991106.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:59 Heat of formation + Delta-G solvation = 54.542835 kcal Electronic energy + Delta-G solvation = -30829.313546 eV Core-core repulsion = 26899.326473 eV Total energy + Delta-G solvation = -3929.987073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.115 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.66142 -41.46360 -39.52904 -39.35307 -37.43497 -36.67365 -34.59660 -34.28306 -31.84007 -31.54080 -30.92600 -29.76002 -27.39997 -26.02222 -25.18721 -23.30846 -23.11809 -22.99687 -22.49089 -21.31183 -19.96055 -19.66037 -19.02565 -17.77141 -17.51371 -17.45061 -16.55800 -16.25431 -16.15661 -15.88951 -15.62792 -15.56370 -15.54609 -15.41785 -15.19971 -14.69869 -14.46903 -14.30831 -14.04318 -13.97151 -13.71063 -13.30624 -13.15171 -12.92095 -12.88047 -12.56013 -12.40330 -12.20156 -12.04663 -12.01748 -11.80164 -11.52965 -11.28487 -11.05685 -10.93270 -10.35248 -9.91995 -9.77399 -9.74992 -9.35601 -9.09115 -6.51253 0.09791 0.31713 0.47543 0.48610 0.60116 1.36098 1.46529 1.68938 1.73792 2.02805 2.33203 2.45628 2.65125 2.73900 2.88812 2.95251 3.27056 3.40501 3.54770 3.69533 3.76017 3.80214 3.85877 4.02082 4.05256 4.16199 4.23593 4.29975 4.34758 4.40967 4.42570 4.52653 4.65886 4.76853 4.79483 4.84484 5.02355 5.04944 5.18913 5.26930 5.41386 5.47591 5.49735 5.50495 5.54824 5.61718 5.75224 5.96062 6.04252 6.10450 6.14481 6.49641 6.90952 7.34207 8.23538 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.004721 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.891622 B = 5929.473959 C = 6554.662382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C -0.009 4.009 3 Si 1.128 2.872 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.269 1.269 7 C -0.467 4.467 8 H 0.081 0.919 9 N -0.464 5.464 10 C 0.493 3.507 11 O -0.502 6.502 12 C -0.077 4.077 13 H 0.131 0.869 14 C -0.184 4.184 15 H 0.083 0.917 16 C 0.537 3.463 17 O -0.527 6.527 18 C 0.053 3.947 19 C -0.088 4.088 20 C -0.106 4.106 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.111 4.111 24 C -0.093 4.093 25 C 0.009 3.991 26 C -0.104 4.104 27 C -0.114 4.114 28 C -0.128 4.128 29 C -0.114 4.114 30 C -0.113 4.113 31 C -0.103 4.103 32 H 0.257 0.743 33 H 0.140 0.860 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 -17.729 -9.384 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.216 4.216 3 Si 0.945 3.055 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.099 0.901 9 N -0.198 5.198 10 C 0.285 3.715 11 O -0.375 6.375 12 C -0.098 4.098 13 H 0.149 0.851 14 C -0.205 4.205 15 H 0.100 0.900 16 C 0.331 3.669 17 O -0.405 6.405 18 C 0.035 3.965 19 C -0.088 4.088 20 C -0.123 4.123 21 C -0.138 4.138 22 C -0.136 4.136 23 C -0.129 4.129 24 C -0.093 4.093 25 C -0.010 4.010 26 C -0.104 4.104 27 C -0.132 4.132 28 C -0.146 4.146 29 C -0.132 4.132 30 C -0.131 4.131 31 C -0.103 4.103 32 H 0.067 0.933 33 H 0.158 0.842 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.148 0.852 40 H 0.165 0.835 41 H 0.175 0.825 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.091 -15.723 -9.460 18.608 hybrid contribution 0.243 -0.920 0.344 1.011 sum -2.848 -16.643 -9.117 19.189 Atomic orbital electron populations 1.70772 1.08072 1.30082 1.40284 1.28078 0.95997 1.06057 0.91423 0.82824 0.74224 0.69775 0.78646 1.18247 1.19883 1.19348 1.20550 1.00862 0.87991 1.49806 0.90101 1.44368 1.37394 1.07684 1.30317 1.22028 0.81874 0.88749 0.78849 1.90568 1.67675 1.42482 1.36820 1.23234 0.97087 0.89764 0.99757 0.85142 1.21509 0.99164 0.98644 1.01230 0.90003 1.19280 0.81514 0.83745 0.82322 1.90534 1.41307 1.80709 1.27966 1.19126 0.95729 0.90522 0.91136 1.20024 0.93549 0.95996 0.99225 1.20954 0.97256 0.94786 0.99334 1.21592 0.93086 1.00870 0.98274 1.21620 1.00893 0.93762 0.97367 1.20763 0.94228 0.97492 1.00369 1.20042 0.95256 0.94645 0.99329 1.19840 0.95408 0.93983 0.91743 1.19848 0.96273 0.98678 0.95620 1.21027 0.98594 0.99394 0.94194 1.21525 0.94384 0.97353 1.01319 1.21746 0.99932 0.97066 0.94420 1.20785 0.96417 1.00328 0.95557 1.20815 0.96692 0.97445 0.95311 0.93292 0.84188 0.83546 0.83133 0.83223 0.84234 0.86577 0.85211 0.83510 0.82539 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -52.40 12.41 21.65 0.27 -52.13 16 2 C -0.01 -0.54 4.71 84.93 0.40 -0.14 16 3 Si 1.13 50.55 29.98 68.60 2.06 52.61 16 4 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 5 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.47 -27.91 9.57 83.97 0.80 -27.10 16 8 H 0.08 4.88 7.93 -2.91 -0.02 4.86 16 9 N -0.46 -25.60 2.64 -580.22 -1.53 -27.13 16 10 C 0.49 25.24 4.69 88.01 0.41 25.65 16 11 O -0.50 -28.51 16.30 -2.86 -0.05 -28.56 16 12 C -0.08 -3.04 3.42 -9.64 -0.03 -3.08 16 13 H 0.13 5.00 8.07 -2.39 -0.02 4.98 16 14 C -0.18 -7.23 3.74 -13.88 -0.05 -7.28 16 15 H 0.08 3.45 2.75 -2.39 -0.01 3.45 16 16 C 0.54 26.88 7.78 85.58 0.67 27.54 16 17 O -0.53 -28.43 17.88 -2.83 -0.05 -28.48 16 18 C 0.05 1.59 4.46 -11.92 -0.05 1.54 16 19 C -0.09 -2.34 4.84 -19.20 -0.09 -2.43 16 20 C -0.11 -2.21 9.94 22.06 0.22 -1.99 16 21 C -0.12 -2.11 10.03 22.42 0.22 -1.88 16 22 C -0.12 -2.13 10.06 22.45 0.23 -1.91 16 23 C -0.11 -2.47 9.97 21.98 0.22 -2.25 16 24 C -0.09 -2.54 4.51 -19.25 -0.09 -2.62 16 25 C 0.01 0.29 3.60 -11.05 -0.04 0.25 16 26 C -0.10 -3.31 4.06 -19.71 -0.08 -3.39 16 27 C -0.11 -3.32 9.93 22.13 0.22 -3.10 16 28 C -0.13 -3.08 10.01 22.38 0.22 -2.85 16 29 C -0.11 -2.51 10.09 22.49 0.23 -2.29 16 30 C -0.11 -2.79 9.97 21.90 0.22 -2.57 16 31 C -0.10 -3.04 4.05 -18.91 -0.08 -3.12 16 32 H 0.26 15.89 6.92 -92.71 -0.64 15.25 16 33 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 35 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 38 H 0.12 3.62 8.14 -2.38 -0.02 3.60 16 39 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 41 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -78.52 346.37 5.44 -73.07 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 1.20 Total: 23.64 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 3.55 Total: -13.02 kcal Atomic # 7 Polarization: -78.00 SS G_CDS: -1.27 Total: -79.27 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -0.10 Total: -57.04 kcal Atomic # 14 Polarization: 50.55 SS G_CDS: 2.06 Total: 52.61 kcal Total: -78.52 5.44 -73.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000991106.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.617 kcal (2) G-P(sol) polarization free energy of solvation -78.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds