Wall clock time and date at job start Tue Mar 31 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35897 * 117.00338 * 2 1 4 4 C 1.38728 * 120.05882 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94525 * 180.02562 * 4 3 2 6 6 C 1.38259 * 120.05398 * 0.02637 * 5 4 3 7 7 C 1.50698 * 119.94568 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47106 * 89.99613 * 7 6 5 9 9 N 1.46504 * 109.47191 * 180.02562 * 8 7 6 10 10 C 1.46503 * 119.99644 * 90.00278 * 9 8 7 11 11 C 1.50709 * 109.47114 * 83.39724 * 10 9 8 12 12 H 1.07998 * 119.99478 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99965 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00107 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99776 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47256 * 60.00890 * 15 13 11 17 17 H 1.48512 * 109.47164 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47666 * 300.00164 * 15 13 11 19 19 C 1.34776 * 120.00283 * 270.00336 * 9 8 7 20 20 O 1.21275 * 119.99814 * 3.92373 * 19 9 8 21 21 C 1.50696 * 119.99922 * 183.92337 * 19 9 8 22 22 Cl 1.80300 * 109.46963 * 151.04583 * 21 19 9 23 23 Cl 1.80296 * 109.47196 * 271.04719 * 21 19 9 24 24 C 1.38265 * 120.11692 * 0.25329 * 6 5 4 25 25 C 1.38154 * 120.05119 * 359.44730 * 24 6 5 26 26 H 1.09001 * 109.46941 * 59.99868 * 1 2 3 27 27 H 1.09000 * 109.47367 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47045 * 300.00060 * 1 2 3 29 29 H 1.08005 * 120.02620 * 0.02562 * 4 3 2 30 30 H 1.08000 * 119.97184 * 180.02562 * 5 4 3 31 31 H 1.08995 * 109.47836 * 210.00032 * 7 6 5 32 32 H 1.09010 * 109.46775 * 330.00367 * 7 6 5 33 33 H 1.09004 * 109.47539 * 300.00454 * 8 7 6 34 34 H 1.08996 * 109.47206 * 60.00791 * 8 7 6 35 35 H 1.09000 * 109.47319 * 203.39205 * 10 9 8 36 36 H 1.09000 * 109.47189 * 323.39657 * 10 9 8 37 37 H 0.96999 * 120.00251 * 179.97438 * 14 13 11 38 38 H 1.08999 * 109.47184 * 31.04681 * 21 19 9 39 39 H 1.07995 * 119.97737 * 179.70809 * 24 6 5 40 40 H 1.07997 * 120.02829 * 180.25464 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0562 2.5169 0.0011 6 6 3.3020 3.6757 0.0016 7 6 3.9861 5.0184 0.0028 8 6 4.2182 5.4738 -1.4393 9 7 4.8838 6.7789 -1.4382 10 6 6.3469 6.8549 -1.4378 11 6 6.8574 6.7189 -2.8493 12 1 6.1615 6.5884 -3.6648 13 6 8.2126 6.7610 -3.0993 14 7 9.0599 6.9194 -2.1060 15 14 8.8452 6.5916 -4.8487 16 1 8.2924 7.6883 -5.6834 17 1 10.3284 6.6688 -4.8484 18 1 8.4183 5.2826 -5.4050 19 6 4.1503 7.9096 -1.4375 20 8 2.9412 7.8479 -1.3659 21 6 4.8325 9.2504 -1.5257 22 17 3.7339 10.4318 -2.3307 23 17 5.2294 9.8330 0.1338 24 6 1.9212 3.6048 0.0069 25 6 1.2915 2.3751 0.0002 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 4.0209 0.3798 0.0005 30 1 5.1346 2.5750 0.0011 31 1 3.3580 5.7459 0.5169 32 1 4.9440 4.9377 0.5169 33 1 4.8464 4.7464 -1.9535 34 1 3.2605 5.5546 -1.9534 35 1 6.6607 7.8154 -1.0290 36 1 6.7524 6.0494 -0.8256 37 1 10.0133 6.9486 -2.2818 38 1 5.7501 9.1537 -2.1059 39 1 1.3343 4.5114 0.0121 40 1 0.2130 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000001614586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:06 Heat of formation + Delta-G solvation = -70.800714 kcal Electronic energy + Delta-G solvation = -25108.782048 eV Core-core repulsion = 21168.493972 eV Total energy + Delta-G solvation = -3940.288076 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.069 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.19584 -39.43561 -37.76374 -36.25498 -35.74788 -35.41959 -33.20118 -32.17333 -31.05860 -29.31643 -27.98550 -27.50451 -26.37658 -23.43584 -22.94640 -22.60358 -20.83352 -18.78557 -18.20617 -17.03802 -16.70185 -16.26258 -16.10340 -15.85544 -15.46823 -15.21810 -14.60022 -14.37772 -14.17842 -13.86941 -13.59022 -13.43925 -13.31571 -12.80504 -12.65023 -12.44200 -12.11385 -12.05082 -11.66565 -11.37519 -11.24785 -11.06578 -10.97892 -10.94368 -10.89504 -10.84497 -10.51673 -10.50098 -10.48508 -10.22444 -9.93151 -9.32978 -8.97598 -8.69699 -8.25303 -7.86013 -6.32082 -4.42512 1.36586 1.41654 1.53229 1.96130 3.16492 3.17717 3.23583 3.25139 3.36865 3.47970 3.79784 4.21486 4.69043 4.73680 4.85195 4.93807 4.95843 5.00517 5.09983 5.18032 5.23984 5.32013 5.43268 5.54082 5.64997 5.69228 5.96604 5.99509 6.18859 6.27709 6.36064 6.43462 6.52894 6.76824 6.78465 6.96349 7.22073 7.32783 7.59718 7.83284 7.97247 8.44657 8.68312 9.27315 10.74196 Molecular weight = 345.07amu Principal moments of inertia in cm(-1) A = 0.009342 B = 0.003325 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.562234 B = 8418.407611 C =10407.712516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.115 3.885 4 C -0.150 4.150 5 C -0.074 4.074 6 C -0.106 4.106 7 C -0.093 4.093 8 C 0.129 3.871 9 N -0.577 5.577 10 C 0.227 3.773 11 C -0.553 4.553 12 H 0.064 0.936 13 C 0.070 3.930 14 N -0.884 5.884 15 Si 0.897 3.103 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.274 1.274 19 C 0.510 3.490 20 O -0.534 6.534 21 C 0.049 3.951 22 Cl -0.118 7.118 23 Cl -0.119 7.119 24 C -0.074 4.074 25 C -0.207 4.207 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.269 0.731 38 H 0.167 0.833 39 H 0.126 0.874 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 -6.232 4.560 13.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.235 6.235 3 C 0.070 3.930 4 C -0.169 4.169 5 C -0.092 4.092 6 C -0.107 4.107 7 C -0.131 4.131 8 C 0.006 3.994 9 N -0.308 5.308 10 C 0.108 3.892 11 C -0.592 4.592 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.521 5.521 15 Si 0.724 3.276 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.294 3.706 20 O -0.412 6.412 21 C -0.024 4.024 22 Cl -0.091 7.091 23 Cl -0.092 7.092 24 C -0.092 4.092 25 C -0.226 4.226 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.185 0.815 39 H 0.144 0.856 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.379 -6.322 4.708 13.843 hybrid contribution 0.356 0.167 -0.921 1.002 sum -11.023 -6.155 3.787 13.181 Atomic orbital electron populations 1.23015 0.78689 1.03639 1.01340 1.86047 1.21158 1.27235 1.89035 1.19028 0.92415 0.83971 0.97551 1.20407 0.91232 0.98655 1.06562 1.20974 1.00224 0.90850 0.97141 1.19764 0.93438 0.95130 1.02343 1.20931 1.00781 0.92968 0.98410 1.21355 0.98367 0.84173 0.95461 1.48210 1.09734 1.03987 1.68853 1.19673 0.72050 0.99367 0.98153 1.21431 0.92187 1.52817 0.92723 0.91767 1.24936 0.96584 0.94282 0.97646 1.69905 1.03076 1.47913 1.31243 0.86556 0.77792 0.79080 0.84144 1.19896 1.21004 1.19958 1.19670 0.87279 0.85032 0.78617 1.90691 1.13343 1.86716 1.50463 1.27182 0.98848 0.89363 0.86982 1.98746 1.68868 1.61480 1.80032 1.98762 1.94105 1.89622 1.26741 1.20920 0.94157 0.97055 0.97096 1.21187 0.99776 0.92364 1.09258 0.92694 0.88483 0.92782 0.85360 0.84933 0.90797 0.90493 0.89470 0.90653 0.93924 0.93761 0.92161 0.81514 0.85602 0.85757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.21 16 2 O -0.32 -3.72 10.50 -19.42 -0.20 -3.92 16 3 C 0.12 1.44 6.69 -39.22 -0.26 1.18 16 4 C -0.15 -1.88 9.99 -39.43 -0.39 -2.28 16 5 C -0.07 -0.96 9.69 -39.61 -0.38 -1.34 16 6 C -0.11 -1.45 5.13 -104.61 -0.54 -1.99 16 7 C -0.09 -1.38 5.67 -27.88 -0.16 -1.54 16 8 C 0.13 2.20 5.37 -4.04 -0.02 2.18 16 9 N -0.58 -11.13 2.46 -175.05 -0.43 -11.56 16 10 C 0.23 4.91 4.77 -5.19 -0.02 4.88 16 11 C -0.55 -13.28 9.13 -34.44 -0.31 -13.59 16 12 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 13 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 14 N -0.88 -22.89 13.29 55.43 0.74 -22.16 16 15 Si 0.90 19.50 29.54 -169.99 -5.02 14.48 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 19 C 0.51 9.94 6.91 -10.99 -0.08 9.86 16 20 O -0.53 -11.13 15.97 5.56 0.09 -11.04 16 21 C 0.05 0.88 3.29 36.00 0.12 1.00 16 22 Cl -0.12 -2.00 28.17 -51.86 -1.46 -3.46 16 23 Cl -0.12 -2.01 28.16 -51.86 -1.46 -3.47 16 24 C -0.07 -0.96 9.69 -39.60 -0.38 -1.34 16 25 C -0.21 -2.46 9.04 -39.43 -0.36 -2.82 16 26 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 31 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 32 H 0.08 1.15 8.09 -51.92 -0.42 0.73 16 33 H 0.09 1.50 8.07 -51.93 -0.42 1.08 16 34 H 0.08 1.31 7.48 -51.93 -0.39 0.92 16 35 H 0.04 0.95 5.87 -51.93 -0.30 0.64 16 36 H 0.04 1.01 8.12 -51.93 -0.42 0.58 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.17 3.13 6.55 -51.93 -0.34 2.79 16 39 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.12 1.19 6.30 -52.49 -0.33 0.86 16 LS Contribution 372.35 15.07 5.61 5.61 Total: -1.00 -27.07 372.35 -9.12 -36.18 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -5.08 Total: 2.28 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: -1.90 Total: -2.94 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.31 Total: -33.72 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.12 Total: -14.96 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 17 Polarization: -4.01 SS G_CDS: -2.92 Total: -6.93 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.07 -9.12 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000001614586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.618 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds