Wall clock time and date at job start Tue Mar 31 2020 04:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00213 * 2 1 4 4 H 1.48498 * 109.47123 * 269.99671 * 3 2 1 5 5 H 1.48506 * 109.46940 * 29.99793 * 3 2 1 6 6 H 1.48509 * 109.47046 * 149.99421 * 3 2 1 7 7 C 1.37885 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99816 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99908 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46946 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.46947 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.47238 * 179.97438 * 11 10 9 13 13 O 1.21254 * 119.99638 * 0.02562 * 12 11 10 14 14 C 1.47118 * 120.00102 * 180.02562 * 12 11 10 15 15 C 1.39886 * 120.16558 * 359.72596 * 14 12 11 16 16 C 1.37851 * 119.82705 * 179.74338 * 15 14 12 17 17 C 1.38481 * 120.16688 * 0.51018 * 16 15 14 18 18 I 2.09502 * 119.83011 * 179.74231 * 17 16 15 19 19 C 1.38481 * 120.33952 * 359.76502 * 17 16 15 20 20 C 1.37856 * 120.16466 * 359.97438 * 19 17 16 21 21 H 0.96996 * 119.99562 * 0.02562 * 1 2 3 22 22 H 1.08992 * 109.46894 * 60.00093 * 9 7 2 23 23 H 1.08996 * 109.46805 * 300.00243 * 9 7 2 24 24 H 1.09001 * 109.47372 * 60.00128 * 10 9 7 25 25 H 1.09004 * 109.47108 * 299.99872 * 10 9 7 26 26 H 1.09001 * 109.46832 * 59.99979 * 11 10 9 27 27 H 1.09000 * 109.47611 * 300.00276 * 11 10 9 28 28 H 1.07993 * 120.08175 * 359.97438 * 15 14 12 29 29 H 1.07999 * 119.91252 * 180.25794 * 16 15 14 30 30 H 1.07998 * 119.92208 * 179.97438 * 19 17 16 31 31 H 1.07994 * 120.08337 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5468 1.4401 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0011 10 6 4.0215 -2.6367 0.0010 11 6 5.5515 -2.6367 0.0009 12 6 6.0538 -4.0576 0.0015 13 8 5.2658 -4.9791 0.0014 14 6 7.5002 -4.3264 0.0021 15 6 8.4123 -3.2658 -0.0036 16 6 9.7661 -3.5257 0.0024 17 6 10.2238 -4.8327 0.0033 18 53 12.2835 -5.2156 0.0042 19 6 9.3270 -5.8879 0.0031 20 6 7.9702 -5.6439 0.0026 21 1 -0.4849 0.8400 -0.0004 22 1 3.8745 -0.6802 0.8911 23 1 3.8752 -0.6805 -0.8888 24 1 3.6585 -3.1503 -0.8893 25 1 3.6578 -3.1507 0.8908 26 1 5.9148 -2.1229 0.8910 27 1 5.9149 -2.1228 -0.8890 28 1 8.0568 -2.2461 -0.0089 29 1 10.4715 -2.7079 0.0022 30 1 9.6914 -6.9046 0.0035 31 1 7.2720 -6.4678 0.0021 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002392824.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:34 Heat of formation + Delta-G solvation = -15.200588 kcal Electronic energy + Delta-G solvation = -14913.778595 eV Core-core repulsion = 12211.907020 eV Total energy + Delta-G solvation = -2701.871575 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 344.001 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.25672 -38.50613 -34.43706 -32.98826 -32.13324 -31.44545 -29.26254 -27.95831 -24.47346 -23.14853 -22.42938 -20.30283 -19.56325 -17.21081 -16.71568 -15.76562 -15.49933 -15.40042 -14.64926 -14.26502 -13.94689 -13.84851 -13.72480 -13.02277 -12.66481 -11.98405 -11.68831 -11.67433 -11.55905 -10.98669 -10.81810 -10.70692 -10.33080 -10.13735 -9.90481 -9.74047 -9.45131 -9.39046 -9.15873 -9.14682 -8.53213 -6.02917 -4.00974 0.22671 0.67303 0.92830 2.24070 3.29946 3.37283 3.39667 3.40073 3.94714 4.35712 4.45094 4.49114 4.89712 4.91335 5.16886 5.23909 5.30346 5.48004 5.52154 5.55562 5.75794 5.79196 5.96528 6.17246 6.35076 6.49047 6.62566 6.86422 7.31388 7.41444 7.57689 7.80023 8.56381 9.03388 9.59029 11.10767 Molecular weight = 344.00amu Principal moments of inertia in cm(-1) A = 0.039629 B = 0.002188 C = 0.002077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.376547 B =12796.537631 C =13477.163973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.094 4.094 11 C -0.168 4.168 12 C 0.390 3.610 13 O -0.441 6.441 14 C -0.143 4.143 15 C -0.068 4.068 16 C -0.099 4.099 17 C -0.079 4.079 18 I -0.042 7.042 19 C -0.099 4.099 20 C -0.062 4.062 21 H 0.263 0.737 22 H 0.016 0.984 23 H 0.011 0.989 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.063 -11.347 0.026 34.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.132 4.132 11 C -0.205 4.205 12 C 0.267 3.733 13 O -0.315 6.315 14 C -0.144 4.144 15 C -0.088 4.088 16 C -0.120 4.120 17 C -0.219 4.219 18 I 0.108 6.892 19 C -0.120 4.120 20 C -0.082 4.082 21 H 0.072 0.928 22 H 0.034 0.966 23 H 0.030 0.970 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.114 0.886 28 H 0.163 0.837 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 32.925 -11.990 0.029 35.041 hybrid contribution -0.700 1.206 -0.022 1.395 sum 32.225 -10.784 0.007 33.982 Atomic orbital electron populations 1.69922 1.06324 1.26835 1.51231 1.25061 0.94749 0.99185 0.94657 0.86759 0.80324 0.83617 0.78437 1.20325 1.21432 1.19014 1.21163 0.89540 0.94534 1.50604 0.90978 1.19595 0.97328 0.92065 0.96161 1.21328 0.89616 0.99885 1.02360 1.22217 1.00709 0.93573 1.04040 1.22798 0.86852 0.92351 0.71305 1.90527 1.58177 1.47811 1.34968 1.20966 0.96175 0.94134 1.03135 1.21606 0.92083 0.99663 0.95474 1.21089 0.96118 0.95205 0.99541 1.24529 0.95585 0.96178 1.05641 1.96889 0.97554 1.96129 1.98619 1.21072 0.92623 0.98587 0.99669 1.21524 0.95103 0.96785 0.94747 0.92763 0.96604 0.97048 0.92169 0.92138 0.88608 0.88605 0.83746 0.84703 0.84834 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.87 4.44 -26.73 -0.12 -1.99 16 11 C -0.17 -2.43 4.31 -27.88 -0.12 -2.55 16 12 C 0.39 5.56 7.12 -30.70 -0.22 5.35 16 13 O -0.44 -7.73 15.97 5.58 0.09 -7.64 16 14 C -0.14 -1.63 5.87 -105.06 -0.62 -2.24 16 15 C -0.07 -0.63 9.47 -39.11 -0.37 -1.00 16 16 C -0.10 -0.84 9.73 -39.63 -0.39 -1.22 16 17 C -0.08 -0.69 6.21 -39.40 -0.24 -0.93 16 18 I -0.04 -0.32 40.25 -73.02 -2.94 -3.26 16 19 C -0.10 -0.89 9.73 -39.63 -0.39 -1.27 16 20 C -0.06 -0.65 9.60 -39.11 -0.38 -1.02 16 21 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 22 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 23 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 24 H 0.06 1.26 8.10 -51.93 -0.42 0.83 16 25 H 0.06 1.26 8.10 -51.93 -0.42 0.84 16 26 H 0.10 1.21 8.09 -51.93 -0.42 0.79 16 27 H 0.10 1.20 8.08 -51.93 -0.42 0.78 16 28 H 0.14 1.08 7.05 -52.49 -0.37 0.71 16 29 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.14 1.46 7.65 -52.49 -0.40 1.06 16 LS Contribution 298.32 15.07 4.50 4.50 Total: -1.00 -32.10 298.32 -9.28 -41.38 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -3.65 Total: -3.54 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -3.38 Total: -20.89 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.77 Total: -27.39 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Atomic # 53 Polarization: -0.32 SS G_CDS: -2.94 Total: -3.26 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -32.10 -9.28 -41.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392824.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.180 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds