Wall clock time and date at job start Tue Mar 31 2020 04:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99838 * 2 1 4 4 H 1.48498 * 109.47176 * 240.00381 * 3 2 1 5 5 H 1.48503 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47212 * 120.00091 * 3 2 1 7 7 C 1.37874 * 120.00375 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00061 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99929 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47318 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47305 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47010 * 180.02562 * 11 10 9 13 13 O 1.21254 * 120.00146 * 0.02562 * 12 11 10 14 14 C 1.47172 * 119.99651 * 180.02562 * 12 11 10 15 15 C 1.39868 * 120.17014 * 359.97438 * 14 12 11 16 16 C 1.37870 * 119.83827 * 180.02562 * 15 14 12 17 17 C 1.38417 * 120.17808 * 0.02562 * 16 15 14 18 18 C 1.38434 * 120.34489 * 359.97438 * 17 16 15 19 19 I 2.09498 * 119.92068 * 180.02562 * 18 17 16 20 20 C 1.37974 * 120.15672 * 0.02562 * 18 17 16 21 21 H 0.96995 * 120.00094 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47102 * 60.00082 * 9 7 2 23 23 H 1.08998 * 109.47215 * 300.00553 * 9 7 2 24 24 H 1.09001 * 109.46842 * 60.00075 * 10 9 7 25 25 H 1.08998 * 109.47554 * 300.00499 * 10 9 7 26 26 H 1.09001 * 109.46880 * 60.00379 * 11 10 9 27 27 H 1.08995 * 109.47706 * 300.00391 * 11 10 9 28 28 H 1.08005 * 120.08018 * 0.02562 * 15 14 12 29 29 H 1.07998 * 119.90838 * 180.02562 * 16 15 14 30 30 H 1.08003 * 119.82280 * 180.02562 * 17 16 15 31 31 H 1.08004 * 120.08696 * 180.26859 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 6 2.4598 -6.1324 -0.0018 13 8 3.6520 -5.9108 -0.0022 14 6 1.9693 -7.5200 -0.0019 15 6 0.5949 -7.7797 -0.0009 16 6 0.1429 -9.0822 -0.0005 17 6 1.0452 -10.1318 -0.0006 18 6 2.4071 -9.8834 -0.0016 19 53 3.7609 -11.4821 -0.0024 20 6 2.8749 -8.5854 -0.0020 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8896 24 1 2.8727 -3.6046 0.8877 25 1 2.8714 -3.6039 -0.8922 26 1 0.8529 -5.0447 -0.8905 27 1 0.8547 -5.0450 0.8894 28 1 -0.1105 -6.9618 -0.0005 29 1 -0.9181 -9.2840 -0.0001 30 1 0.6848 -11.1500 -0.0006 31 1 3.9376 -8.3929 -0.0071 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002392829.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:42 Heat of formation + Delta-G solvation = -35.786618 kcal Electronic energy + Delta-G solvation = -14902.464747 eV Core-core repulsion = 12199.700495 eV Total energy + Delta-G solvation = -2702.764252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 344.001 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.19830 -39.42822 -36.16825 -34.24064 -33.51708 -32.34764 -30.04572 -28.79491 -26.41216 -24.43677 -23.14840 -22.04461 -20.43183 -18.47879 -18.13858 -16.82609 -16.65387 -16.62102 -16.41822 -15.37004 -14.99806 -14.97180 -14.37002 -14.16115 -13.91835 -13.69749 -13.10314 -12.79896 -12.61391 -12.51950 -12.39939 -11.96992 -11.56821 -11.51888 -11.39549 -11.27975 -10.96899 -10.59225 -10.54123 -10.12727 -9.88039 -8.20442 -6.30386 -0.46665 0.04024 0.09800 1.33040 1.39414 1.41873 1.50006 2.40821 2.63034 2.93612 3.12540 3.76771 3.91587 3.98251 4.15347 4.20289 4.26380 4.30803 4.59537 4.76106 4.85069 4.96552 5.09678 5.12561 5.18154 5.22532 5.25376 5.52901 5.68950 5.75509 5.86669 6.27625 6.49620 6.85094 7.38245 8.90759 Molecular weight = 344.00amu Principal moments of inertia in cm(-1) A = 0.044400 B = 0.002190 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.482673 B =12782.393677 C =13387.129398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.027 3.973 10 C -0.091 4.091 11 C -0.157 4.157 12 C 0.399 3.601 13 O -0.491 6.491 14 C -0.178 4.178 15 C -0.049 4.049 16 C -0.117 4.117 17 C -0.053 4.053 18 C -0.125 4.125 19 I -0.034 7.034 20 C -0.047 4.047 21 H 0.265 0.735 22 H 0.002 0.998 23 H 0.002 0.998 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.162 0.838 29 H 0.175 0.825 30 H 0.156 0.844 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 -31.116 -0.003 31.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.010 4.010 10 C -0.129 4.129 11 C -0.194 4.194 12 C 0.279 3.721 13 O -0.369 6.369 14 C -0.180 4.180 15 C -0.068 4.068 16 C -0.137 4.137 17 C -0.074 4.074 18 C -0.265 4.265 19 I 0.116 6.884 20 C -0.068 4.068 21 H 0.074 0.926 22 H 0.021 0.979 23 H 0.021 0.979 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.180 0.820 29 H 0.192 0.808 30 H 0.174 0.826 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.210 -32.010 -0.005 32.086 hybrid contribution -0.161 2.050 0.001 2.056 sum 2.048 -29.960 -0.005 30.030 Atomic orbital electron populations 1.70047 1.07440 1.27868 1.51483 1.25881 0.95819 1.02976 0.94687 0.85588 0.78436 0.78545 0.79027 1.19490 1.20325 1.19476 1.21687 0.93331 0.92944 1.50874 0.93146 1.19004 0.94177 0.92214 0.95644 1.21249 0.97870 0.93596 1.00178 1.22093 0.98927 0.92233 1.06164 1.22987 0.89328 0.90289 0.69498 1.90501 1.20494 1.87873 1.38019 1.20585 0.95667 0.93597 1.08173 1.22001 0.93508 0.99318 0.91932 1.21629 1.01904 0.90927 0.99198 1.21703 0.90485 1.01673 0.93516 1.24316 0.97075 0.95105 1.10014 1.96855 1.56516 1.36253 1.98786 1.21317 1.00134 0.91204 0.94109 0.92626 0.97935 0.97925 0.94144 0.94134 0.86458 0.86465 0.82040 0.80784 0.82587 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 2 C 0.00 0.26 5.46 84.65 0.46 0.72 16 3 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.55 -32.16 9.11 25.60 0.23 -31.92 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.39 4.97 29.85 0.15 1.54 16 10 C -0.09 -3.91 4.44 30.59 0.14 -3.77 16 11 C -0.16 -4.85 4.31 29.85 0.13 -4.72 16 12 C 0.40 12.25 7.12 28.04 0.20 12.45 16 13 O -0.49 -18.90 15.98 -2.95 -0.05 -18.95 16 14 C -0.18 -4.22 5.87 -20.15 -0.12 -4.34 16 15 C -0.05 -0.81 9.47 22.58 0.21 -0.60 16 16 C -0.12 -1.41 10.03 22.23 0.22 -1.18 16 17 C -0.05 -0.73 9.75 22.36 0.22 -0.51 16 18 C -0.12 -2.33 6.19 22.25 0.14 -2.19 16 19 I -0.03 -0.57 40.26 -18.82 -0.76 -1.32 16 20 C -0.05 -1.10 9.30 22.59 0.21 -0.89 16 21 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 22 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 23 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 24 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 25 H 0.04 1.81 8.10 -2.39 -0.02 1.79 16 26 H 0.12 3.12 8.09 -2.39 -0.02 3.10 16 27 H 0.12 3.12 8.09 -2.39 -0.02 3.10 16 28 H 0.16 2.05 7.05 -2.91 -0.02 2.03 16 29 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 30 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.12 3.22 7.65 -2.91 -0.02 3.20 16 Total: -1.00 -69.61 301.93 4.82 -64.79 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.12 Total: -0.43 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 2.19 Total: -35.42 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.28 Total: -55.62 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.05 Total: -18.95 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Atomic # 53 Polarization: -0.57 SS G_CDS: -0.76 Total: -1.32 kcal Total: -69.61 4.82 -64.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002392829.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.007 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds