Wall clock time and date at job start Tue Mar 31 2020 07:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 120.00065 * 2 1 4 4 H 1.48499 * 109.47229 * 270.00401 * 3 2 1 5 5 H 1.48500 * 109.46718 * 30.00142 * 3 2 1 6 6 H 1.48504 * 109.47132 * 149.99928 * 3 2 1 7 7 C 1.38819 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00064 * 162.10820 * 7 2 1 9 9 N 1.36937 * 119.99380 * 342.10252 * 7 2 1 10 10 C 1.46924 * 120.65079 * 327.38182 * 9 7 2 11 11 C 1.53186 * 108.74775 * 126.31378 * 10 9 7 12 12 C 1.52975 * 109.38183 * 54.57807 * 11 10 9 13 13 O 1.42901 * 109.41640 * 178.97381 * 12 11 10 14 14 C 1.52968 * 109.62157 * 58.97485 * 12 11 10 15 15 C 1.53022 * 109.41624 * 179.47950 * 14 12 11 16 16 C 1.52991 * 109.49082 * 59.92104 * 15 14 12 17 17 C 1.53004 * 109.51958 * 300.13782 * 16 15 14 18 18 C 1.53039 * 109.42763 * 60.04165 * 17 16 15 19 19 H 1.09002 * 109.87929 * 179.52053 * 18 17 16 20 20 C 1.46920 * 120.64141 * 147.40333 * 9 7 2 21 21 H 1.08999 * 109.57806 * 113.92534 * 20 9 7 22 22 C 1.50700 * 109.58267 * 353.52078 * 20 9 7 23 23 C 1.38250 * 119.92941 * 306.69562 * 22 20 9 24 24 C 1.38239 * 120.14792 * 179.78068 * 23 22 20 25 25 C 1.38550 * 120.02250 * 0.48136 * 24 23 22 26 26 C 1.39268 * 119.83012 * 359.77782 * 25 24 23 27 27 C 1.38238 * 119.93127 * 126.97266 * 22 20 9 28 28 O 1.36497 * 108.63830 * 179.97438 * 26 25 24 29 29 C 1.43987 * 105.48871 * 17.27536 * 28 26 25 30 30 O 1.36503 * 131.53225 * 179.73013 * 25 24 23 31 31 H 0.96998 * 119.99843 * 359.97438 * 1 2 3 32 32 H 1.08995 * 109.59131 * 6.53047 * 10 9 7 33 33 H 1.08997 * 109.58998 * 246.08891 * 10 9 7 34 34 H 1.08999 * 109.48043 * 294.60546 * 11 10 9 35 35 H 1.08998 * 109.50351 * 174.56326 * 11 10 9 36 36 H 0.96698 * 113.99995 * 299.87703 * 13 12 11 37 37 H 1.09002 * 109.47847 * 59.49749 * 14 12 11 38 38 H 1.08998 * 109.48046 * 299.46665 * 14 12 11 39 39 H 1.08991 * 109.47017 * 299.91625 * 15 14 12 40 40 H 1.08999 * 109.46275 * 179.91641 * 15 14 12 41 41 H 1.09003 * 109.46334 * 60.14630 * 16 15 14 42 42 H 1.09000 * 109.46023 * 180.12496 * 16 15 14 43 43 H 1.08997 * 109.47953 * 180.02562 * 17 16 15 44 44 H 1.08999 * 109.47651 * 300.04976 * 17 16 15 45 45 H 1.08008 * 119.92807 * 0.02562 * 23 22 20 46 46 H 1.07994 * 119.98996 * 180.25669 * 24 23 22 47 47 H 1.08005 * 119.97991 * 359.97438 * 27 22 20 48 48 H 1.09000 * 110.57140 * 91.44455 * 29 28 26 49 49 H 1.09006 * 110.57060 * 214.32188 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0511 -1.2246 -0.2879 9 7 1.3752 -2.3595 0.3634 10 6 0.3095 -2.3430 1.3747 11 6 -0.9359 -3.0153 0.7886 12 6 -0.5689 -4.4122 0.2845 13 8 -1.7353 -5.0493 -0.2407 14 6 -0.0110 -5.2451 1.4399 15 6 0.3423 -6.6452 0.9335 16 6 1.3924 -6.5376 -0.1739 17 6 0.8349 -5.7014 -1.3276 18 6 0.4859 -4.3009 -0.8189 19 1 0.0957 -3.6959 -1.6374 20 6 1.7467 -3.6421 -0.2495 21 1 2.1900 -4.2924 0.5046 22 6 2.7372 -3.4032 -1.3598 23 6 2.4426 -2.5005 -2.3646 24 6 3.3499 -2.2745 -3.3828 25 6 4.5535 -2.9605 -3.4038 26 6 4.8479 -3.8739 -2.3946 27 6 3.9360 -4.0914 -1.3746 28 8 6.0783 -4.4122 -2.6388 29 6 6.7073 -3.5226 -3.5801 30 8 5.5993 -2.9269 -4.2805 31 1 -0.4850 0.8400 0.0004 32 1 0.0765 -1.3127 1.6433 33 1 0.6370 -2.8885 2.2597 34 1 -1.3155 -2.4178 -0.0402 35 1 -1.7023 -3.0966 1.5593 36 1 -2.4481 -5.1578 0.4037 37 1 -0.7605 -5.3219 2.2277 38 1 0.8841 -4.7649 1.8351 39 1 -0.5531 -7.1257 0.5395 40 1 0.7413 -7.2390 1.7559 41 1 2.2889 -6.0596 0.2209 42 1 1.6420 -7.5350 -0.5358 43 1 1.5833 -5.6256 -2.1163 44 1 -0.0620 -6.1789 -1.7222 45 1 1.5032 -1.9676 -2.3519 46 1 3.1189 -1.5657 -4.1642 47 1 4.1617 -4.7991 -0.5905 48 1 7.2856 -2.7598 -3.0586 49 1 7.3410 -4.0803 -4.2697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002407091.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:18 Heat of formation + Delta-G solvation = -65.258642 kcal Electronic energy + Delta-G solvation = -33212.120309 eV Core-core repulsion = 29105.462429 eV Total energy + Delta-G solvation = -4106.657880 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.177 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.77189 -40.21992 -37.60763 -35.93088 -35.34643 -34.84798 -32.11430 -31.75776 -30.06174 -29.78984 -29.06049 -27.58605 -25.58326 -25.11736 -23.37576 -22.63984 -22.29925 -21.77006 -20.94012 -20.18697 -18.04441 -17.47412 -17.18503 -16.94237 -16.35942 -15.94295 -15.75836 -15.12247 -15.02330 -14.56095 -14.21959 -14.07604 -13.66558 -13.51619 -13.44629 -13.19323 -12.87062 -12.67918 -12.64553 -12.54760 -12.30177 -12.26026 -11.99335 -11.59142 -11.39555 -11.32609 -10.97625 -10.83985 -10.77902 -10.54537 -10.47698 -10.42529 -10.36314 -10.26453 -9.95935 -9.81488 -9.68590 -9.23429 -8.88817 -8.49166 -8.31095 -7.49095 -6.62846 -5.88261 -3.35102 1.68901 1.78672 3.10399 3.31996 3.40160 3.43363 3.74283 4.14237 4.43192 4.72969 4.85343 4.94672 5.02181 5.10636 5.12297 5.25390 5.32574 5.35171 5.52824 5.54430 5.64247 5.67090 5.71704 5.83306 5.87882 5.97182 5.98225 6.00477 6.06281 6.13913 6.22887 6.33901 6.35696 6.41019 6.50246 6.54530 6.56392 6.62680 6.65677 6.78272 6.79799 6.85127 6.95383 6.98869 7.07245 7.30220 7.44671 7.55455 7.60580 7.75774 8.18022 8.38658 9.10631 9.71692 10.31086 11.15800 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.008649 B = 0.006215 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3236.754091 B = 4504.389976 C = 7004.356269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.011 3.989 3 Si 0.893 3.107 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.066 0.934 9 N -0.582 5.582 10 C 0.165 3.835 11 C -0.149 4.149 12 C 0.145 3.855 13 O -0.564 6.564 14 C -0.147 4.147 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.110 4.110 18 C -0.074 4.074 19 H 0.076 0.924 20 C 0.214 3.786 21 H 0.047 0.953 22 C -0.044 4.044 23 C -0.048 4.048 24 C -0.112 4.112 25 C 0.017 3.983 26 C 0.010 3.990 27 C -0.095 4.095 28 O -0.316 6.316 29 C 0.215 3.785 30 O -0.317 6.317 31 H 0.254 0.746 32 H 0.095 0.905 33 H 0.004 0.996 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.364 0.636 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.063 0.937 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.149 0.851 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.076 0.924 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.482 -9.706 -1.109 10.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.189 4.189 3 Si 0.722 3.278 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.375 4.375 8 H 0.084 0.916 9 N -0.305 5.305 10 C 0.040 3.960 11 C -0.188 4.188 12 C 0.105 3.895 13 O -0.369 6.369 14 C -0.185 4.185 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.148 4.148 18 C -0.094 4.094 19 H 0.095 0.905 20 C 0.108 3.892 21 H 0.064 0.936 22 C -0.045 4.045 23 C -0.067 4.067 24 C -0.131 4.131 25 C -0.026 4.026 26 C -0.034 4.034 27 C -0.114 4.114 28 O -0.233 6.233 29 C 0.102 3.898 30 O -0.233 6.233 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.022 0.978 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.210 0.790 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.167 0.833 46 H 0.144 0.856 47 H 0.143 0.857 48 H 0.094 0.906 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.875 -9.658 -1.777 10.558 hybrid contribution 0.321 1.076 0.418 1.198 sum 4.197 -8.583 -1.359 9.650 Atomic orbital electron populations 1.69988 1.05185 1.25635 1.52239 1.25072 0.95114 0.98276 1.00433 0.86451 0.79474 0.83952 0.77905 1.21242 1.21574 1.20461 1.19047 0.92818 0.84329 1.41325 0.91639 1.44252 1.41949 1.01835 1.42454 1.20842 0.85714 1.01051 0.88418 1.22569 0.99589 0.95338 1.01297 1.21120 0.84857 0.91072 0.92488 1.86520 1.26427 1.82267 1.41698 1.22294 1.02011 0.96132 0.98013 1.21422 0.99080 0.96724 0.97652 1.21555 0.98518 0.99246 0.96317 1.21500 1.00428 0.95640 0.97268 1.21574 0.94964 0.95594 0.97296 0.90546 1.19711 0.90114 0.89239 0.90093 0.93595 1.19530 0.93434 0.95410 0.96083 1.20988 0.99748 0.95118 0.90840 1.20090 0.91417 1.00604 1.01018 1.19744 0.92307 1.00443 0.90153 1.19560 0.88122 0.97564 0.98156 1.19846 0.92670 1.02530 0.96337 1.87279 1.26954 1.47305 1.61768 1.25448 0.88701 0.89073 0.86544 1.87290 1.19551 1.79394 1.37110 0.93542 0.88743 0.97832 0.89876 0.94037 0.79041 0.92713 0.90253 0.91982 0.93041 0.91890 0.92881 0.92486 0.91872 0.83296 0.85558 0.85737 0.90634 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.04 11.32 55.49 0.63 -22.41 16 2 C 0.01 0.28 4.91 -17.43 -0.09 0.20 16 3 Si 0.89 20.58 29.59 -169.99 -5.03 15.55 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.01 6.79 -15.06 -0.10 -6.11 16 8 H 0.07 1.66 6.74 -52.49 -0.35 1.31 16 9 N -0.58 -12.85 2.95 -166.08 -0.49 -13.34 16 10 C 0.17 3.52 5.22 -3.71 -0.02 3.50 16 11 C -0.15 -2.85 5.24 -26.65 -0.14 -2.99 16 12 C 0.14 2.44 0.72 -90.62 -0.07 2.37 16 13 O -0.56 -9.03 11.54 -35.23 -0.41 -9.43 16 14 C -0.15 -2.18 4.27 -26.74 -0.11 -2.30 16 15 C -0.11 -1.49 5.77 -26.72 -0.15 -1.64 16 16 C -0.12 -1.67 5.64 -26.73 -0.15 -1.82 16 17 C -0.11 -1.75 5.12 -26.71 -0.14 -1.88 16 18 C -0.07 -1.33 1.81 -90.45 -0.16 -1.49 16 19 H 0.08 1.59 7.61 -51.93 -0.40 1.19 16 20 C 0.21 4.07 1.87 -68.74 -0.13 3.94 16 21 H 0.05 0.86 4.51 -51.93 -0.23 0.63 16 22 C -0.04 -0.82 2.88 -104.62 -0.30 -1.13 16 23 C -0.05 -0.94 7.11 -39.58 -0.28 -1.22 16 24 C -0.11 -2.04 10.06 -39.47 -0.40 -2.44 16 25 C 0.02 0.31 7.15 -39.08 -0.28 0.03 16 26 C 0.01 0.17 7.15 -39.09 -0.28 -0.11 16 27 C -0.09 -1.67 9.68 -39.47 -0.38 -2.05 16 28 O -0.32 -5.09 11.40 -45.68 -0.52 -5.61 16 29 C 0.21 2.77 8.89 101.05 0.90 3.67 16 30 O -0.32 -5.17 11.40 -45.70 -0.52 -5.69 16 31 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 32 H 0.09 2.30 5.76 -51.93 -0.30 2.00 16 33 H 0.00 0.08 6.73 -51.93 -0.35 -0.27 16 34 H 0.08 1.88 8.14 -51.93 -0.42 1.45 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.36 4.48 9.04 45.56 0.41 4.90 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 1.29 5.02 -51.93 -0.26 1.03 16 39 H 0.06 0.83 7.66 -51.93 -0.40 0.43 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.90 6.26 -51.93 -0.33 0.58 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.92 7.43 -51.93 -0.39 0.53 16 44 H 0.06 1.02 7.64 -51.93 -0.40 0.62 16 45 H 0.15 3.21 7.28 -52.48 -0.38 2.83 16 46 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 47 H 0.12 1.99 7.96 -52.48 -0.42 1.57 16 48 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 362.85 15.07 5.47 5.47 Total: -1.00 -27.38 362.85 -9.46 -36.84 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -6.30 Total: 10.11 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -2.28 Total: -11.48 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.14 Total: -35.76 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -1.45 Total: -20.74 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.38 -9.46 -36.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002407091.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.416 kcal (2) G-P(sol) polarization free energy of solvation -27.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds