Wall clock time and date at job start Tue Mar 31 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38232 * 119.99871 * 2 1 4 4 C 1.38234 * 119.99749 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00368 * 0.25489 * 4 3 2 6 6 S 1.76200 * 120.00275 * 179.72816 * 5 4 3 7 7 O 1.42096 * 106.40159 * 200.14793 * 6 5 4 8 8 O 1.42100 * 106.40125 * 333.06735 * 6 5 4 9 9 N 1.65603 * 107.21761 * 86.60808 * 6 5 4 10 10 C 1.46502 * 119.99884 * 275.73359 * 9 6 5 11 11 C 1.50692 * 109.46871 * 95.00218 * 10 9 6 12 12 H 1.08002 * 120.00231 * 0.02562 * 11 10 9 13 13 C 1.37880 * 120.00126 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00556 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99585 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47148 * 89.99857 * 15 13 11 17 17 H 1.48497 * 109.46940 * 209.99802 * 15 13 11 18 18 H 1.48497 * 109.47208 * 330.00008 * 15 13 11 19 19 C 1.46501 * 119.99861 * 95.73558 * 9 6 5 20 20 C 1.50701 * 109.47058 * 95.94326 * 19 9 6 21 21 C 1.38235 * 120.00192 * 264.80719 * 20 19 9 22 22 C 1.38235 * 120.00271 * 179.76678 * 21 20 19 23 23 C 1.38234 * 119.99563 * 0.50941 * 22 21 20 24 24 C 1.38234 * 120.00257 * 359.74320 * 23 22 21 25 25 C 1.38234 * 119.99780 * 85.08340 * 20 19 9 26 26 C 1.38240 * 119.99574 * 359.48769 * 5 4 3 27 27 C 1.38231 * 120.00185 * 0.48918 * 26 5 4 28 28 H 1.09002 * 109.46769 * 90.00470 * 1 2 3 29 29 H 1.08997 * 109.47409 * 209.99952 * 1 2 3 30 30 H 1.08994 * 109.47167 * 330.00354 * 1 2 3 31 31 H 1.07998 * 119.99989 * 359.97379 * 3 2 1 32 32 H 1.08000 * 119.99737 * 179.97438 * 4 3 2 33 33 H 1.09002 * 109.46807 * 215.00099 * 10 9 6 34 34 H 1.08996 * 109.46735 * 334.99979 * 10 9 6 35 35 H 0.97004 * 120.00483 * 180.02562 * 14 13 11 36 36 H 1.09002 * 109.47253 * 215.94167 * 19 9 6 37 37 H 1.09001 * 109.47319 * 335.94614 * 19 9 6 38 38 H 1.08008 * 119.99932 * 0.02562 * 21 20 19 39 39 H 1.07991 * 120.00146 * 180.23844 * 22 21 20 40 40 H 1.08002 * 119.99802 * 179.72891 * 23 22 21 41 41 H 1.07999 * 120.00104 * 179.97438 * 24 23 22 42 42 H 1.07992 * 120.00227 * 0.02562 * 25 20 19 43 43 H 1.07999 * 119.99902 * 180.25717 * 26 5 4 44 44 H 1.08000 * 120.00054 * 179.76389 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 -0.0043 6 16 6.0337 0.0001 -0.0108 7 8 6.4332 -1.2788 -0.4842 8 8 6.4326 1.2165 -0.6275 9 7 6.5298 0.0907 1.5666 10 6 6.6280 1.3933 2.2298 11 6 5.3561 1.6668 2.9904 12 1 4.5549 0.9426 2.9810 13 6 5.2156 2.8412 3.6991 14 7 4.1055 3.0802 4.3624 15 14 6.6016 4.0934 3.7158 16 1 6.4243 5.0433 2.5881 17 1 6.5792 4.8394 4.9996 18 1 7.9033 3.3930 3.5730 19 6 6.8704 -1.1317 2.2987 20 6 8.3599 -1.3535 2.2405 21 6 8.8981 -2.1814 1.2731 22 6 10.2648 -2.3810 1.2167 23 6 11.0923 -1.7611 2.1342 24 6 10.5536 -0.9373 3.1048 25 6 9.1873 -0.7335 3.1580 26 6 3.5805 -1.1971 0.0011 27 6 2.1982 -1.1972 0.0011 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6581 2.1324 -0.0004 32 1 4.1205 2.1324 0.0001 33 1 7.4705 1.3863 2.9214 34 1 6.7785 2.1715 1.4816 35 1 4.0065 3.9065 4.8607 36 1 6.5584 -1.0315 3.3383 37 1 6.3587 -1.9809 1.8460 38 1 8.2512 -2.6690 0.5588 39 1 10.6856 -3.0248 0.4586 40 1 12.1597 -1.9205 2.0929 41 1 11.2001 -0.4532 3.8219 42 1 8.7664 -0.0905 3.9167 43 1 4.1205 -2.1324 0.0016 44 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002840089.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:49 Heat of formation + Delta-G solvation = -23.219619 kcal Electronic energy + Delta-G solvation = -28420.251795 eV Core-core repulsion = 24622.336641 eV Total energy + Delta-G solvation = -3797.915154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.119 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -39.05164 -38.97129 -36.74961 -35.84360 -35.31461 -32.80311 -32.65373 -31.07265 -30.70963 -30.61480 -27.95334 -27.06501 -25.17439 -22.54686 -22.47942 -21.93854 -21.53439 -20.94460 -18.54172 -17.59243 -16.95095 -16.80672 -16.37026 -15.78716 -15.13258 -15.06506 -14.86723 -14.63402 -14.25649 -14.15561 -13.83907 -13.70622 -13.22922 -13.14969 -13.04652 -12.63362 -12.33734 -12.29970 -12.22399 -12.01234 -11.86409 -11.80337 -11.59280 -11.41997 -11.36650 -11.19502 -10.85850 -10.84982 -10.57494 -10.47723 -10.25735 -10.23321 -9.63503 -8.80600 -8.69850 -8.66161 -8.64077 -8.53788 -8.15247 -6.18757 -4.19640 0.88632 1.23843 1.61109 1.67329 1.67389 3.22988 3.30087 3.34125 3.48116 3.87383 4.07242 4.31486 4.34756 4.78247 4.94541 5.03128 5.09296 5.10818 5.14355 5.21160 5.23481 5.41505 5.43877 5.44805 5.57410 5.61721 5.79299 5.82757 5.84426 5.89240 6.09086 6.12687 6.15725 6.26039 6.27914 6.39877 6.45162 6.52079 6.69668 6.72290 6.74028 6.82771 6.92828 7.08611 7.19075 7.25577 7.30196 7.49586 8.37397 8.86474 9.41537 10.93332 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.005321 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.705505 B = 5260.586725 C = 7392.132109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.038 4.038 3 C -0.139 4.139 4 C 0.015 3.985 5 C -0.670 4.670 6 S 2.692 3.308 7 O -0.974 6.974 8 O -0.963 6.963 9 N -0.971 5.971 10 C 0.213 3.787 11 C -0.542 4.542 12 H 0.082 0.918 13 C 0.079 3.921 14 N -0.891 5.891 15 Si 0.863 3.137 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.262 1.262 19 C 0.168 3.832 20 C -0.101 4.101 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.124 4.124 24 C -0.129 4.129 25 C -0.098 4.098 26 C -0.022 4.022 27 C -0.151 4.151 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.127 0.873 32 H 0.140 0.860 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.265 0.735 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.546 -9.316 -5.864 11.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.038 4.038 3 C -0.158 4.158 4 C -0.004 4.004 5 C -0.757 4.757 6 S 2.783 3.217 7 O -0.964 6.964 8 O -0.954 6.954 9 N -0.808 5.808 10 C 0.089 3.911 11 C -0.581 4.581 12 H 0.100 0.900 13 C -0.124 4.124 14 N -0.529 5.529 15 Si 0.689 3.311 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.186 1.186 19 C 0.042 3.958 20 C -0.103 4.103 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.143 4.143 24 C -0.147 4.147 25 C -0.117 4.117 26 C -0.041 4.041 27 C -0.170 4.170 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.145 0.855 32 H 0.157 0.843 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.151 0.849 39 H 0.136 0.864 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.152 0.848 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.957 -9.193 -6.460 11.405 hybrid contribution -0.095 0.937 0.633 1.134 sum 1.862 -8.256 -5.828 10.276 Atomic orbital electron populations 1.20885 0.91147 1.03243 1.02316 1.20156 0.96050 0.93459 0.94174 1.21117 0.94355 0.97713 1.02644 1.20883 0.94497 0.96826 0.88230 1.30959 1.27449 0.99343 1.17907 1.01790 0.73876 0.73069 0.72956 1.93484 1.81624 1.41965 1.79367 1.93534 1.81206 1.46351 1.74263 1.57178 1.79697 1.13219 1.30678 1.19658 0.98645 0.78821 0.93931 1.21449 1.00953 1.05102 1.30559 0.89985 1.24815 0.95330 0.97628 0.94668 1.69890 1.25593 1.25625 1.31762 0.87045 0.83583 0.82437 0.78007 1.19711 1.21019 1.18627 1.20058 0.89961 0.86174 0.99612 1.20426 0.96903 0.97102 0.95840 1.21365 0.95352 0.97988 0.97702 1.21114 0.93791 1.00616 0.99211 1.21104 0.99345 0.97975 0.95836 1.21124 0.95255 0.99238 0.99059 1.21215 0.93331 0.98291 0.98815 1.20793 0.94577 0.96334 0.92401 1.21007 0.94160 0.97519 1.04328 0.90923 0.91312 0.91038 0.85456 0.84259 0.94104 0.93961 0.92515 0.88662 0.89982 0.84851 0.86401 0.86630 0.86393 0.85534 0.84841 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 10.01 36.01 0.36 -0.94 16 2 C -0.04 -0.56 5.88 -104.62 -0.62 -1.17 16 3 C -0.14 -2.32 9.70 -39.58 -0.38 -2.70 16 4 C 0.01 0.28 9.52 -39.59 -0.38 -0.09 16 5 C -0.67 -12.39 5.97 -39.58 -0.24 -12.63 16 6 S 2.69 52.53 5.65 -107.50 -0.61 51.92 16 7 O -0.97 -18.39 14.98 -57.17 -0.86 -19.24 16 8 O -0.96 -21.38 16.06 -57.17 -0.92 -22.29 16 9 N -0.97 -19.09 2.75 -116.95 -0.32 -19.41 16 10 C 0.21 4.78 4.51 -5.20 -0.02 4.76 16 11 C -0.54 -13.82 9.94 -34.44 -0.34 -14.16 16 12 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.89 -25.38 13.96 55.43 0.77 -24.60 16 15 Si 0.86 20.22 27.47 -169.99 -4.67 15.55 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 19 C 0.17 2.83 5.51 -5.19 -0.03 2.80 16 20 C -0.10 -1.64 5.45 -104.62 -0.57 -2.21 16 21 C -0.11 -1.61 9.51 -39.58 -0.38 -1.99 16 22 C -0.13 -1.75 10.05 -39.58 -0.40 -2.15 16 23 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 24 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 25 C -0.10 -1.53 9.21 -39.58 -0.36 -1.90 16 26 C -0.02 -0.35 9.53 -39.58 -0.38 -0.73 16 27 C -0.15 -2.19 9.70 -39.58 -0.38 -2.58 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 30 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 31 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.14 2.72 7.70 -52.49 -0.40 2.31 16 33 H 0.04 0.90 6.01 -51.93 -0.31 0.58 16 34 H 0.04 0.99 6.42 -51.93 -0.33 0.66 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.10 1.59 8.09 -51.93 -0.42 1.17 16 37 H 0.08 1.22 7.32 -51.93 -0.38 0.84 16 38 H 0.13 2.01 7.23 -52.48 -0.38 1.63 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 42 H 0.13 1.97 7.46 -52.49 -0.39 1.58 16 43 H 0.13 1.87 7.55 -52.49 -0.40 1.48 16 44 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 380.42 15.07 5.73 5.73 Total: -1.00 -31.31 380.42 -11.86 -43.17 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.98 Total: 7.02 kcal Atomic # 6 Polarization: -32.83 SS G_CDS: -5.01 Total: -37.84 kcal Atomic # 7 Polarization: -44.47 SS G_CDS: 0.45 Total: -44.02 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -1.77 Total: -41.54 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.67 Total: 15.55 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.61 Total: 51.92 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.31 -11.86 -43.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002840089.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.953 kcal (2) G-P(sol) polarization free energy of solvation -31.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds