Wall clock time and date at job start Tue Mar 31 2020 05:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31543 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.47329 * 270.00090 * 3 2 1 5 5 H 1.48498 * 109.47249 * 30.00302 * 3 2 1 6 6 H 1.48501 * 109.47195 * 149.99817 * 3 2 1 7 7 C 1.38771 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99685 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00128 * 180.02562 * 7 2 1 10 10 C 1.76198 * 99.99693 * 179.97438 * 9 7 2 11 11 N 1.30684 * 119.03114 * 0.26926 * 10 9 7 12 12 C 1.36186 * 121.68354 * 180.26516 * 11 10 9 13 13 C 1.40050 * 129.01121 * 179.73170 * 12 11 10 14 14 C 1.32681 * 115.82159 * 179.97438 * 13 12 11 15 15 S 1.75575 * 110.59323 * 0.02562 * 14 13 12 16 16 C 1.39250 * 118.37737 * 359.73079 * 12 11 10 17 17 C 1.41405 * 119.26453 * 359.97438 * 16 12 11 18 18 O 1.21964 * 120.58915 * 179.97438 * 17 16 12 19 19 N 1.34879 * 118.81892 * 0.02562 * 17 16 12 20 20 C 1.46505 * 120.04095 * 179.97438 * 19 17 16 21 21 C 1.50703 * 109.47064 * 90.00126 * 20 19 17 22 22 C 1.38234 * 119.99770 * 269.72527 * 21 20 19 23 23 C 1.38239 * 119.99901 * 179.76875 * 22 21 20 24 24 C 1.38240 * 119.99645 * 0.50240 * 23 22 21 25 25 C 1.38227 * 120.00205 * 359.74956 * 24 23 22 26 26 C 1.38232 * 119.99860 * 89.99969 * 21 20 19 27 27 H 0.97008 * 120.00218 * 359.97438 * 1 2 3 28 28 H 1.08006 * 122.08646 * 0.02562 * 13 12 11 29 29 H 1.08008 * 124.70651 * 180.02562 * 14 13 12 30 30 H 1.09002 * 109.47068 * 210.00095 * 20 19 17 31 31 H 1.09001 * 109.47372 * 330.00182 * 20 19 17 32 32 H 1.08001 * 120.00330 * 359.97438 * 22 21 20 33 33 H 1.08001 * 119.99843 * 180.23314 * 23 22 21 34 34 H 1.08002 * 119.99612 * 179.72381 * 24 23 22 35 35 H 1.07996 * 120.00251 * 179.97438 * 25 24 23 36 36 H 1.07998 * 120.00407 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5470 1.4402 0.7001 7 6 2.0093 -1.2018 -0.0005 8 1 1.4693 -2.1370 -0.0005 9 16 3.7713 -1.2018 0.0001 10 6 4.0772 -2.9370 -0.0001 11 7 3.0620 -3.7599 -0.0061 12 6 3.2361 -5.1106 -0.0012 13 6 2.2694 -6.1240 -0.0012 14 6 2.7348 -7.3665 0.0037 15 16 4.4905 -7.3684 0.0096 16 6 4.5358 -5.6104 0.0046 17 6 5.6237 -4.7071 0.0047 18 8 6.7719 -5.1184 0.0103 19 7 5.3691 -3.3826 -0.0003 20 6 6.4760 -2.4229 0.0003 21 6 6.8602 -2.0983 -1.4203 22 6 7.8247 -2.8504 -2.0645 23 6 8.1737 -2.5557 -3.3692 24 6 7.5656 -1.5023 -4.0262 25 6 6.6049 -0.7470 -3.3802 26 6 6.2522 -1.0449 -2.0772 27 1 -0.4851 0.8401 0.0004 28 1 1.2113 -5.9076 -0.0058 29 1 2.1190 -8.2539 0.0040 30 1 6.1659 -1.5108 0.5103 31 1 7.3319 -2.8557 0.5183 32 1 8.3032 -3.6704 -1.5496 33 1 8.9245 -3.1457 -3.8738 34 1 7.8414 -1.2693 -5.0440 35 1 6.1302 0.0763 -3.8933 36 1 5.5022 -0.4542 -1.5723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003059209.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:14 Heat of formation + Delta-G solvation = 52.541662 kcal Electronic energy + Delta-G solvation = -24599.494209 eV Core-core repulsion = 21073.669654 eV Total energy + Delta-G solvation = -3525.824555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 344.039 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.15424 -39.03357 -37.59795 -36.19986 -33.75529 -32.82606 -31.19287 -30.77671 -29.55650 -26.71961 -26.01117 -24.78510 -23.57119 -22.40241 -21.44484 -20.78474 -19.05748 -17.76031 -17.46420 -16.83262 -16.61701 -15.99409 -15.68852 -15.35224 -14.96100 -14.87117 -14.71641 -13.78022 -13.70618 -13.36867 -13.30498 -13.13792 -12.90099 -12.64479 -12.37558 -12.23958 -12.06559 -11.98356 -11.46719 -11.37281 -11.12209 -10.90156 -10.84850 -10.37175 -9.94059 -9.50682 -9.44011 -9.29449 -9.19332 -8.79279 -8.75006 -8.69501 -8.17580 -7.11737 -6.62153 -4.44196 0.56336 1.28939 1.53521 1.65137 1.77479 1.95857 2.24456 2.72362 2.97082 3.00042 3.02642 3.13099 3.86544 3.92905 3.97612 4.09255 4.63804 4.75326 4.76883 4.81893 5.04021 5.10701 5.24128 5.27550 5.37530 5.43934 5.56420 5.67603 5.75558 5.98292 6.06698 6.11988 6.18569 6.23033 6.55310 6.62033 6.63936 6.68644 6.91577 7.09841 7.63116 8.12201 8.28778 8.54533 8.74969 10.45590 Molecular weight = 344.04amu Principal moments of inertia in cm(-1) A = 0.008341 B = 0.005996 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3356.260106 B = 4669.028802 C = 7371.956977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.103 3.897 3 Si 0.836 3.164 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.238 1.238 7 C -0.531 4.531 8 H 0.133 0.867 9 S 0.085 5.915 10 C 0.359 3.641 11 N -0.505 5.505 12 C 0.203 3.797 13 C -0.125 4.125 14 C -0.176 4.176 15 S 0.160 5.840 16 C -0.364 4.364 17 C 0.581 3.419 18 O -0.548 6.548 19 N -0.517 5.517 20 C 0.135 3.865 21 C -0.113 4.113 22 C -0.091 4.091 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.125 4.125 26 C -0.094 4.094 27 H 0.278 0.722 28 H 0.152 0.848 29 H 0.174 0.826 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.124 0.876 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.394 -5.004 -2.815 11.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.109 4.109 3 Si 0.660 3.340 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.162 1.162 7 C -0.679 4.679 8 H 0.151 0.849 9 S 0.326 5.674 10 C -0.010 4.010 11 N -0.233 5.233 12 C 0.071 3.929 13 C -0.157 4.157 14 C -0.313 4.313 15 S 0.422 5.578 16 C -0.489 4.489 17 C 0.377 3.623 18 O -0.428 6.428 19 N -0.241 5.241 20 C 0.013 3.987 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.143 4.143 26 C -0.113 4.113 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.191 0.809 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.142 0.858 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.890 -5.054 -2.778 13.215 hybrid contribution -1.224 0.560 -0.090 1.349 sum 10.666 -4.494 -2.868 11.924 Atomic orbital electron populations 1.69852 1.05765 1.28268 1.44358 1.24745 0.94631 0.98407 0.93109 0.87124 0.81864 0.84534 0.80487 1.18357 1.18599 1.16239 1.22905 0.86405 0.99900 1.58645 0.84901 1.82898 1.13288 0.89267 1.81973 1.25369 0.80298 1.02749 0.92630 1.68998 1.27042 1.00419 1.26811 1.19135 0.90178 0.91255 0.92365 1.19586 1.00968 0.90132 1.05025 1.25615 0.98757 1.01042 1.05903 1.83709 1.00919 0.98756 1.74437 1.24192 0.97447 0.99150 1.28139 1.15697 0.88597 0.80805 0.77222 1.90836 1.21966 1.76985 1.53006 1.46382 1.06734 1.07497 1.63475 1.20796 0.89962 0.93079 0.94853 1.19950 0.98231 0.97243 0.96017 1.21194 0.96569 0.98403 0.94841 1.21105 1.00737 0.98095 0.94918 1.21186 0.96722 0.95654 0.99621 1.21168 0.97917 1.00227 0.94970 1.21533 0.97991 0.96714 0.95086 0.91170 0.83046 0.80883 0.87597 0.87412 0.85462 0.86225 0.86263 0.85797 0.84614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.99 13.96 55.49 0.77 -22.21 16 2 C 0.10 2.64 5.50 -17.48 -0.10 2.54 16 3 Si 0.84 17.64 27.74 -169.99 -4.71 12.92 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 6 H -0.24 -4.65 6.74 56.52 0.38 -4.27 16 7 C -0.53 -13.61 9.78 30.93 0.30 -13.31 16 8 H 0.13 3.80 6.74 -52.49 -0.35 3.44 16 9 S 0.08 1.77 15.00 -107.50 -1.61 0.16 16 10 C 0.36 7.57 7.77 -88.73 -0.69 6.88 16 11 N -0.51 -11.33 8.46 -11.12 -0.09 -11.42 16 12 C 0.20 4.06 6.99 -84.88 -0.59 3.47 16 13 C -0.12 -2.03 10.16 -40.79 -0.41 -2.45 16 14 C -0.18 -2.32 11.12 28.84 0.32 -2.00 16 15 S 0.16 2.42 23.29 -107.50 -2.50 -0.08 16 16 C -0.36 -7.05 6.48 -38.00 -0.25 -7.29 16 17 C 0.58 11.71 7.46 -15.01 -0.11 11.60 16 18 O -0.55 -11.33 16.35 4.95 0.08 -11.25 16 19 N -0.52 -9.91 2.60 -120.76 -0.31 -10.22 16 20 C 0.14 2.15 5.10 -5.19 -0.03 2.13 16 21 C -0.11 -1.76 5.46 -104.62 -0.57 -2.33 16 22 C -0.09 -1.35 9.70 -39.58 -0.38 -1.73 16 23 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 24 C -0.11 -1.41 10.05 -39.58 -0.40 -1.81 16 25 C -0.12 -1.69 10.05 -39.58 -0.40 -2.09 16 26 C -0.09 -1.44 9.31 -39.58 -0.37 -1.81 16 27 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.15 2.28 8.06 -52.48 -0.42 1.86 16 29 H 0.17 1.58 8.06 -52.48 -0.42 1.15 16 30 H 0.11 1.54 6.49 -51.93 -0.34 1.21 16 31 H 0.11 1.59 7.39 -51.93 -0.38 1.21 16 32 H 0.13 1.90 7.64 -52.49 -0.40 1.50 16 33 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.14 2.13 5.74 -52.49 -0.30 1.83 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -29.80 335.91 -10.44 -40.24 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -3.05 Total: 7.09 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -4.07 Total: -10.29 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.37 Total: -43.86 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -4.71 Total: 12.92 kcal Atomic # 16 Polarization: 4.19 SS G_CDS: -4.12 Total: 0.08 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.80 -10.44 -40.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003059209.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.779 kcal (2) G-P(sol) polarization free energy of solvation -29.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds