Wall clock time and date at job start Tue Mar 31 2020 06:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00421 * 2 1 4 4 C 1.50702 * 109.46873 * 270.00099 * 3 2 1 5 5 H 1.08006 * 120.00158 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00160 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99632 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00504 * 180.02562 * 6 4 3 9 9 H 1.48506 * 109.46698 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47647 * 119.99672 * 8 6 4 11 11 H 1.48501 * 109.47155 * 240.00000 * 8 6 4 12 12 C 1.38802 * 119.99694 * 180.02562 * 2 1 3 13 13 C 1.39416 * 119.87873 * 359.97438 * 12 2 1 14 14 C 1.36450 * 120.11759 * 179.97438 * 13 12 2 15 15 C 1.40405 * 119.88061 * 359.97438 * 14 13 12 16 16 C 1.46155 * 120.11849 * 179.97438 * 15 14 13 17 17 C 1.38228 * 120.00151 * 45.75287 * 16 15 14 18 18 C 1.47626 * 121.47884 * 10.43594 * 17 16 15 19 19 O 1.21642 * 120.91665 * 0.02562 * 18 17 16 20 20 N 1.34900 * 118.16325 * 180.21741 * 18 17 16 21 21 C 1.34029 * 121.54413 * 359.54170 * 20 18 17 22 22 S 1.71199 * 118.22552 * 180.25672 * 21 20 18 23 23 N 1.34026 * 123.54402 * 0.27821 * 21 20 18 24 24 C 1.34891 * 121.54285 * 359.95606 * 23 21 20 25 25 O 1.21648 * 120.92025 * 180.02562 * 24 23 21 26 26 C 1.40416 * 119.76125 * 0.27959 * 15 14 13 27 27 C 1.36445 * 119.87780 * 359.43595 * 26 15 14 28 28 H 1.09002 * 109.46781 * 270.00206 * 1 2 3 29 29 H 1.08995 * 109.46982 * 29.99661 * 1 2 3 30 30 H 1.08991 * 109.47506 * 150.00375 * 1 2 3 31 31 H 1.08998 * 109.47233 * 29.99881 * 3 2 1 32 32 H 1.08998 * 109.47035 * 150.00674 * 3 2 1 33 33 H 0.97001 * 120.00145 * 179.97438 * 7 6 4 34 34 H 1.07997 * 119.93855 * 359.95804 * 13 12 2 35 35 H 1.08003 * 120.05449 * 179.97438 * 14 13 12 36 36 H 1.07997 * 120.00132 * 225.74064 * 16 15 14 37 37 H 0.97008 * 119.22565 * 179.81983 * 20 18 17 38 38 H 0.97002 * 119.22630 * 179.97438 * 23 21 20 39 39 H 1.08001 * 120.05629 * 179.69965 * 26 15 14 40 40 H 1.08002 * 119.94040 * 180.25086 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 1 2.0981 1.0956 -2.2418 6 6 3.1271 2.8772 -1.6729 7 7 3.5544 3.6173 -0.6733 8 14 3.4378 3.4169 -3.4340 9 1 2.8597 2.4168 -4.3673 10 1 2.8009 4.7379 -3.6667 11 1 4.9003 3.5243 -3.6681 12 6 2.1590 -1.2021 -0.0005 13 6 1.4593 -2.4080 -0.0005 14 6 2.1365 -3.5925 -0.0016 15 6 3.5406 -3.5955 -0.0032 16 6 4.2712 -4.8613 -0.0038 17 6 3.8924 -5.8777 -0.8606 18 6 2.9117 -5.6503 -1.9404 19 8 2.4078 -4.5557 -2.1066 20 7 2.5869 -6.6908 -2.7351 21 6 3.1384 -7.9007 -2.5665 22 16 2.6694 -9.1593 -3.6280 23 7 4.0368 -8.1786 -1.6115 24 6 4.4538 -7.2376 -0.7397 25 8 5.2702 -7.5021 0.1225 26 6 4.2402 -2.3781 0.0022 27 6 3.5531 -1.1993 -0.0027 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5137 31 1 1.6086 2.0284 0.5138 32 1 3.1500 1.1382 0.5137 33 1 4.0320 4.4428 -0.8505 34 1 0.3793 -2.4045 0.0006 35 1 1.5934 -4.5261 -0.0012 36 1 5.1073 -5.0025 0.6651 37 1 1.9421 -6.5593 -3.4478 38 1 4.3956 -9.0774 -1.5459 39 1 5.3202 -2.3748 0.0059 40 1 4.0902 -0.2623 -0.0026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003157686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:56 Heat of formation + Delta-G solvation = 19.079370 kcal Electronic energy + Delta-G solvation = -26794.204575 eV Core-core repulsion = 22894.583299 eV Total energy + Delta-G solvation = -3899.621276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.35818 -39.83464 -39.34855 -38.01785 -36.27079 -34.82702 -33.61547 -32.79167 -31.01642 -29.69326 -28.12352 -27.24937 -25.51936 -24.21190 -23.94656 -22.60640 -21.87151 -20.53319 -19.86545 -19.47149 -18.15790 -17.43424 -17.11045 -16.85241 -16.67599 -16.17627 -15.59912 -15.34720 -15.12294 -14.88980 -14.56069 -14.34996 -14.03627 -13.73453 -13.54107 -13.22857 -13.10025 -12.61678 -12.37724 -12.14273 -11.74874 -11.64945 -11.49377 -11.20524 -11.05291 -10.94812 -10.87976 -10.68454 -10.59989 -10.36587 -10.05488 -9.84886 -9.00322 -8.70698 -8.67854 -8.63761 -8.33542 -6.77233 -6.24949 -4.37969 -0.53948 0.48155 1.03620 1.59677 1.86802 2.00343 2.01912 2.25121 2.90687 3.14251 3.23389 3.27721 3.41686 3.74496 3.96111 4.15526 4.25333 4.63675 4.92141 5.03263 5.07865 5.12639 5.26664 5.47633 5.55226 5.59522 5.66842 5.76508 5.77676 5.89631 6.01348 6.10316 6.21075 6.24103 6.58402 6.67519 6.73684 6.86398 6.93237 7.05671 7.15948 7.23683 7.59725 7.83349 7.91554 8.04534 8.69906 9.30115 10.76573 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015628 B = 0.002520 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.175488 B =11107.492242 C =11463.721296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.588 5.588 3 C 0.240 3.760 4 C -0.538 4.538 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.281 1.281 12 C 0.287 3.713 13 C -0.236 4.236 14 C 0.032 3.968 15 C -0.235 4.235 16 C 0.188 3.812 17 C -0.344 4.344 18 C 0.549 3.451 19 O -0.442 6.442 20 N -0.616 5.616 21 C 0.562 3.438 22 S -0.545 6.545 23 N -0.618 5.618 24 C 0.563 3.437 25 O -0.481 6.481 26 C -0.011 4.011 27 C -0.208 4.208 28 H 0.046 0.954 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.266 0.734 34 H 0.121 0.879 35 H 0.107 0.893 36 H 0.151 0.849 37 H 0.445 0.555 38 H 0.444 0.556 39 H 0.122 0.878 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 -16.731 2.788 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.286 5.286 3 C 0.121 3.879 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.207 1.207 12 C 0.173 3.827 13 C -0.259 4.259 14 C 0.012 3.988 15 C -0.238 4.238 16 C 0.167 3.833 17 C -0.352 4.352 18 C 0.337 3.663 19 O -0.311 6.311 20 N -0.265 5.265 21 C 0.211 3.789 22 S -0.412 6.412 23 N -0.267 5.267 24 C 0.353 3.647 25 O -0.354 6.354 26 C -0.031 4.031 27 C -0.230 4.230 28 H 0.065 0.935 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.139 0.861 35 H 0.125 0.875 36 H 0.168 0.832 37 H 0.290 0.710 38 H 0.290 0.710 39 H 0.140 0.860 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.144 -16.270 2.779 16.546 hybrid contribution 0.279 0.644 -0.916 1.154 sum -0.865 -15.626 1.863 15.761 Atomic orbital electron populations 1.21692 0.80625 1.02835 1.00584 1.47356 1.05401 1.05324 1.70527 1.19523 0.92347 0.78317 0.97737 1.21516 1.37131 1.06827 0.92148 0.91995 1.24951 0.95120 0.96115 0.97684 1.69924 1.37858 1.14365 1.30867 0.86429 0.78195 0.78587 0.84247 1.19618 1.20788 1.20689 1.18341 0.91767 0.86094 0.86546 1.20259 0.99554 0.91074 1.14971 1.20424 0.91969 0.96845 0.89515 1.18348 0.93461 0.91397 1.20598 1.23331 0.88642 0.88271 0.83055 1.21479 1.12101 0.95430 1.06219 1.18874 0.81701 0.83822 0.81872 1.91079 1.49825 1.21381 1.68850 1.44336 1.40944 1.07293 1.33950 1.22070 0.81101 0.89700 0.86055 1.93893 1.70559 1.34754 1.42020 1.44121 1.37901 1.17027 1.27613 1.18824 0.80571 0.85034 0.80246 1.90921 1.30669 1.81382 1.32447 1.20697 0.98928 0.90621 0.92862 1.20591 0.92437 0.99249 1.10692 0.93547 0.90655 0.91953 0.94516 0.94040 0.92446 0.86101 0.87451 0.83151 0.70997 0.71049 0.86028 0.84143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.30 10.17 59.85 0.61 1.91 16 2 N -0.59 -11.03 2.97 -180.96 -0.54 -11.56 16 3 C 0.24 5.40 4.89 -5.19 -0.03 5.38 16 4 C -0.54 -13.57 9.39 -34.44 -0.32 -13.89 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 7 N -0.89 -23.98 13.29 55.43 0.74 -23.25 16 8 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 9 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C 0.29 5.02 6.56 -83.83 -0.55 4.47 16 13 C -0.24 -3.54 9.13 -39.79 -0.36 -3.90 16 14 C 0.03 0.43 6.58 -39.41 -0.26 0.17 16 15 C -0.24 -3.01 4.73 -105.09 -0.50 -3.51 16 16 C 0.19 1.90 9.43 -36.41 -0.34 1.56 16 17 C -0.34 -3.52 5.90 -102.24 -0.60 -4.12 16 18 C 0.55 5.97 7.34 -12.37 -0.09 5.87 16 19 O -0.44 -6.09 13.14 5.24 0.07 -6.02 16 20 N -0.62 -5.53 5.15 -14.14 -0.07 -5.60 16 21 C 0.56 5.17 7.77 -88.26 -0.69 4.49 16 22 S -0.55 -6.49 30.63 -107.50 -3.29 -9.78 16 23 N -0.62 -5.07 5.15 -14.15 -0.07 -5.14 16 24 C 0.56 5.47 7.96 -12.38 -0.10 5.37 16 25 O -0.48 -5.59 17.41 5.23 0.09 -5.50 16 26 C -0.01 -0.16 9.75 -39.41 -0.38 -0.54 16 27 C -0.21 -3.57 9.13 -39.79 -0.36 -3.93 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.06 0.83 6.16 -51.93 -0.32 0.51 16 31 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.04 0.98 6.16 -51.93 -0.32 0.66 16 33 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 34 H 0.12 1.62 6.10 -52.49 -0.32 1.30 16 35 H 0.11 1.28 7.15 -52.48 -0.38 0.90 16 36 H 0.15 1.19 7.80 -52.49 -0.41 0.78 16 37 H 0.44 3.47 8.65 -40.82 -0.35 3.11 16 38 H 0.44 2.93 8.64 -40.82 -0.35 2.57 16 39 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 40 H 0.14 2.68 6.10 -52.49 -0.32 2.36 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -29.92 358.00 -10.78 -40.70 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.00 Total: 4.67 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -4.08 Total: 0.89 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.05 Total: -45.55 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.16 Total: -11.52 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 16 Polarization: -6.49 SS G_CDS: -3.29 Total: -9.78 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.92 -10.78 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003157686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.783 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds