Wall clock time and date at job start Tue Mar 31 2020 05:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86802 * 119.99900 * 2 1 4 4 H 1.48498 * 109.47505 * 275.00177 * 3 2 1 5 5 H 1.48500 * 109.47019 * 35.00583 * 3 2 1 6 6 H 1.48502 * 109.46625 * 155.00131 * 3 2 1 7 7 C 1.40123 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07989 * 120.00134 * 185.07302 * 7 2 1 9 9 C 1.46195 * 119.99712 * 5.06938 * 7 2 1 10 10 O 1.21728 * 120.00089 * 5.07096 * 9 7 2 11 11 N 1.34777 * 119.99683 * 185.07107 * 9 7 2 12 12 C 1.39099 * 119.99611 * 175.43261 * 11 9 7 13 13 C 1.39265 * 119.93285 * 215.16894 * 12 11 9 14 14 C 1.37624 * 120.05940 * 180.02562 * 13 12 11 15 15 C 1.39790 * 119.93988 * 359.97438 * 14 13 12 16 16 C 1.47567 * 120.06292 * 179.97438 * 15 14 13 17 17 O 1.21596 * 120.00299 * 359.72379 * 16 15 14 18 18 N 1.34780 * 119.99479 * 179.97438 * 16 15 14 19 19 C 1.39847 * 119.99539 * 175.10708 * 18 16 15 20 20 C 1.38927 * 120.06372 * 214.82943 * 19 18 16 21 21 C 1.38091 * 119.94954 * 179.74186 * 20 19 18 22 22 C 1.38289 * 120.08514 * 0.51676 * 21 20 19 23 23 C 1.38377 * 120.13406 * 359.75727 * 22 21 20 24 24 Cl 1.73600 * 119.97978 * 179.97438 * 23 22 21 25 25 C 1.38252 * 120.04641 * 359.97438 * 23 22 21 26 26 C 1.39790 * 119.87039 * 0.25358 * 15 14 13 27 27 C 1.37625 * 119.93866 * 359.51597 * 26 15 14 28 28 H 0.97005 * 119.99688 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99866 * 355.43784 * 11 9 7 30 30 H 1.08002 * 119.96899 * 0.02562 * 13 12 11 31 31 H 1.08007 * 120.02929 * 179.97438 * 14 13 12 32 32 H 0.96994 * 120.00414 * 355.10941 * 18 16 15 33 33 H 1.07997 * 120.02243 * 359.97438 * 20 19 18 34 34 H 1.08001 * 119.95570 * 180.25389 * 21 20 19 35 35 H 1.08004 * 119.92992 * 179.74274 * 22 21 20 36 36 H 1.07991 * 120.04349 * 180.02562 * 25 23 22 37 37 H 1.08001 * 120.03148 * 179.72373 * 26 15 14 38 38 H 1.08001 * 119.97023 * 180.20854 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.3822 2.1076 -1.3947 5 1 1.4947 2.6198 0.8032 6 1 3.5868 1.4119 0.5917 7 6 2.0070 -1.2135 -0.0005 8 1 3.0837 -1.2154 0.0822 9 6 1.2803 -2.4770 -0.1130 10 8 0.0773 -2.4728 -0.2988 11 7 1.9423 -3.6465 -0.0109 12 6 1.2394 -4.8468 -0.0226 13 6 1.6774 -5.9161 0.7547 14 6 0.9843 -7.1051 0.7448 15 6 -0.1606 -7.2386 -0.0462 16 6 -0.9055 -8.5124 -0.0594 17 8 -0.5209 -9.4487 0.6143 18 7 -2.0095 -8.6395 -0.8221 19 6 -2.6568 -9.8756 -0.9147 20 6 -3.2569 -10.2594 -2.1074 21 6 -3.8909 -11.4829 -2.1978 22 6 -3.9383 -12.3219 -1.0995 23 6 -3.3466 -11.9407 0.0919 24 17 -3.4092 -12.9967 1.4684 25 6 -2.7057 -10.7194 0.1869 26 6 -0.5950 -6.1651 -0.8291 27 6 0.0993 -4.9769 -0.8116 28 1 -0.4850 0.8401 0.0004 29 1 2.9088 -3.6512 0.0707 30 1 2.5617 -5.8123 1.3660 31 1 1.3246 -7.9342 1.3475 32 1 -2.3549 -7.8736 -1.3068 33 1 -3.2244 -9.6030 -2.9644 34 1 -4.3539 -11.7831 -3.1262 35 1 -4.4384 -13.2764 -1.1717 36 1 -2.2436 -10.4222 1.1166 37 1 -1.4766 -6.2669 -1.4446 38 1 -0.2378 -4.1461 -1.4137 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003358048.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:14 Heat of formation + Delta-G solvation = -24.507933 kcal Electronic energy + Delta-G solvation = -25238.675990 eV Core-core repulsion = 21264.713737 eV Total energy + Delta-G solvation = -3973.962253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.80722 -39.43659 -38.55766 -36.92154 -36.63592 -34.88476 -33.69259 -32.64459 -31.03301 -30.77355 -30.24147 -28.89469 -26.53269 -24.07100 -23.09405 -22.54900 -22.17732 -20.68250 -19.83160 -18.49194 -17.77485 -17.40703 -16.56567 -16.38086 -15.70709 -15.65061 -15.29781 -14.80109 -14.60765 -14.41470 -14.12669 -13.85069 -13.70123 -13.60522 -13.24971 -12.91872 -12.65136 -12.30806 -12.15629 -12.05888 -11.91685 -11.72563 -11.41285 -11.22399 -11.17385 -10.89370 -10.74986 -10.49043 -10.44361 -9.89813 -9.53327 -9.04685 -9.02813 -8.69572 -8.43413 -7.91299 -7.37623 -6.50951 -4.96739 0.79430 0.98442 1.26151 1.78977 1.90339 2.88665 2.92335 2.99666 3.06701 3.09945 3.43373 3.87138 4.10043 4.34002 4.40933 4.55019 4.77601 4.81779 4.83473 5.04232 5.12987 5.18100 5.29267 5.45037 5.52495 5.65025 5.84422 5.89585 5.97630 6.01304 6.05227 6.13540 6.35627 6.54907 6.66063 6.67613 6.84477 7.09125 7.16555 7.25602 7.52823 7.82966 7.98362 8.05673 8.70573 8.99353 10.18991 10.40019 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.028209 B = 0.001852 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.354579 B =15112.053653 C =15571.223382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.757 5.757 2 C 0.086 3.914 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.074 0.926 9 C 0.540 3.460 10 O -0.558 6.558 11 N -0.695 5.695 12 C 0.229 3.771 13 C -0.188 4.188 14 C -0.029 4.029 15 C -0.200 4.200 16 C 0.571 3.429 17 O -0.528 6.528 18 N -0.675 5.675 19 C 0.168 3.832 20 C -0.145 4.145 21 C -0.088 4.088 22 C -0.133 4.133 23 C -0.016 4.016 24 Cl -0.070 7.070 25 C -0.116 4.116 26 C -0.062 4.062 27 C -0.141 4.141 28 H 0.274 0.726 29 H 0.397 0.603 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.414 0.586 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.118 0.882 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 -18.398 -3.736 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.348 3.652 10 O -0.440 6.440 11 N -0.336 5.336 12 C 0.127 3.873 13 C -0.210 4.210 14 C -0.048 4.048 15 C -0.204 4.204 16 C 0.364 3.636 17 O -0.405 6.405 18 N -0.321 5.321 19 C 0.072 3.928 20 C -0.165 4.165 21 C -0.107 4.107 22 C -0.152 4.152 23 C -0.043 4.043 24 Cl -0.041 7.041 25 C -0.137 4.137 26 C -0.081 4.081 27 C -0.162 4.162 28 H 0.085 0.915 29 H 0.231 0.769 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.252 0.748 33 H 0.151 0.849 34 H 0.153 0.847 35 H 0.150 0.850 36 H 0.170 0.830 37 H 0.136 0.864 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.640 -18.822 -3.241 19.914 hybrid contribution 0.729 1.153 -0.024 1.364 sum -4.911 -17.668 -3.264 18.626 Atomic orbital electron populations 1.69959 1.07240 1.28116 1.33143 1.25756 0.94738 1.00662 0.92396 0.86227 0.80195 0.80737 0.78956 1.19519 1.20201 1.18671 1.20868 0.94268 0.88917 1.53119 0.90747 1.18460 0.87273 0.81979 0.77499 1.90616 1.14724 1.85828 1.52860 1.44246 1.10036 1.04396 1.74971 1.18272 0.92410 0.86271 0.90348 1.20908 1.03706 0.93950 1.02411 1.20835 0.92131 0.96720 0.95148 1.19363 1.00539 0.93551 1.06975 1.18514 0.78955 0.88220 0.77960 1.90742 1.67803 1.40677 1.41316 1.43503 1.27879 1.10643 1.50063 1.17599 0.95058 0.87030 0.93094 1.21061 1.01532 0.97833 0.96091 1.20871 0.98467 0.93097 0.98289 1.21018 1.01523 1.01039 0.91628 1.20744 1.01490 0.92730 0.89346 1.98372 1.97301 1.65326 1.43071 1.21228 0.99567 0.93113 0.99787 1.21049 0.98158 0.92243 0.96681 1.21433 0.96680 0.97701 1.00406 0.91518 0.76874 0.85563 0.85204 0.74762 0.84923 0.84686 0.84986 0.83044 0.86445 0.83205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.90 11.87 55.55 0.66 -20.24 16 2 C 0.09 2.21 5.49 -17.35 -0.10 2.12 16 3 Si 0.91 18.56 29.56 -169.99 -5.03 13.54 16 4 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.54 -13.77 9.53 -35.68 -0.34 -14.11 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.54 13.94 7.56 -13.07 -0.10 13.84 16 10 O -0.56 -16.18 12.48 5.16 0.06 -16.11 16 11 N -0.69 -14.26 5.30 -11.18 -0.06 -14.32 16 12 C 0.23 4.34 6.29 -83.80 -0.53 3.81 16 13 C -0.19 -3.01 9.95 -39.42 -0.39 -3.41 16 14 C -0.03 -0.44 9.58 -39.23 -0.38 -0.82 16 15 C -0.20 -3.04 5.88 -104.93 -0.62 -3.66 16 16 C 0.57 8.37 7.61 -12.45 -0.09 8.28 16 17 O -0.53 -8.98 13.77 5.28 0.07 -8.90 16 18 N -0.68 -7.89 5.28 -10.80 -0.06 -7.95 16 19 C 0.17 1.94 6.30 -83.72 -0.53 1.41 16 20 C -0.14 -1.29 9.97 -39.38 -0.39 -1.68 16 21 C -0.09 -0.70 10.04 -39.62 -0.40 -1.09 16 22 C -0.13 -1.18 9.83 -39.51 -0.39 -1.57 16 23 C -0.02 -0.18 6.32 -39.52 -0.25 -0.43 16 24 Cl -0.07 -0.75 28.95 -51.86 -1.50 -2.25 16 25 C -0.12 -1.48 8.48 -39.35 -0.33 -1.81 16 26 C -0.06 -0.94 9.52 -39.23 -0.37 -1.31 16 27 C -0.14 -2.66 8.66 -39.43 -0.34 -3.00 16 28 H 0.27 6.84 8.29 -40.82 -0.34 6.50 16 29 H 0.40 6.86 8.80 -40.82 -0.36 6.50 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 31 H 0.13 1.85 7.64 -52.48 -0.40 1.45 16 32 H 0.41 3.79 6.86 -40.82 -0.28 3.51 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.15 2.20 6.22 -52.49 -0.33 1.88 16 37 H 0.12 1.37 6.40 -52.49 -0.34 1.03 16 38 H 0.15 3.22 6.21 -52.49 -0.33 2.90 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -32.29 350.02 -9.38 -41.67 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -3.27 Total: 12.73 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: -5.54 Total: -3.45 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.54 Total: -42.50 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: 0.14 Total: -25.02 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.29 -9.38 -41.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003358048.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.161 kcal (2) G-P(sol) polarization free energy of solvation -32.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds