Wall clock time and date at job start Tue Mar 31 2020 06:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48491 * 109.47415 * 270.00333 * 3 2 1 5 5 H 1.48495 * 109.47118 * 30.00628 * 3 2 1 6 6 H 1.48503 * 109.47119 * 150.00043 * 3 2 1 7 7 C 1.38750 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00283 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.34313 * 117.00114 * 180.02562 * 9 7 2 11 11 O 1.21216 * 119.99698 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.02562 * 10 9 7 13 13 C 1.53038 * 109.45851 * 180.02562 * 12 10 9 14 14 C 1.53195 * 109.30921 * 178.62669 * 13 12 10 15 15 N 1.46930 * 108.77806 * 54.63324 * 14 13 12 16 16 S 1.65591 * 120.63187 * 126.36548 * 15 14 13 17 17 O 1.42100 * 106.40323 * 336.46374 * 16 15 14 18 18 O 1.42097 * 106.40600 * 203.54472 * 16 15 14 19 19 C 1.76205 * 107.21602 * 90.00482 * 16 15 14 20 20 C 1.33388 * 125.20425 * 90.00509 * 19 16 15 21 21 C 1.38421 * 114.92066 * 180.29370 * 20 19 16 22 22 C 1.33395 * 114.92147 * 359.48238 * 21 20 19 23 23 S 1.75885 * 125.20117 * 270.02125 * 19 16 15 24 24 C 1.46930 * 118.73809 * 306.64624 * 15 14 13 25 25 C 1.52762 * 109.00821 * 53.30343 * 24 15 14 26 26 H 0.97004 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.45578 * 299.97242 * 12 10 9 28 28 H 1.08997 * 109.49908 * 58.67968 * 13 12 10 29 29 H 1.08997 * 109.52165 * 298.58758 * 13 12 10 30 30 H 1.09002 * 109.58762 * 294.84752 * 14 13 12 31 31 H 1.08995 * 109.70211 * 174.49148 * 14 13 12 32 32 H 1.08002 * 122.53671 * 0.02562 * 20 19 16 33 33 H 1.08001 * 122.54223 * 179.72513 * 21 20 19 34 34 H 1.07998 * 125.20353 * 180.21324 * 22 21 20 35 35 H 1.08999 * 109.58657 * 173.14120 * 24 15 14 36 36 H 1.08994 * 109.58690 * 293.56719 * 24 15 14 37 37 H 1.09002 * 109.56293 * 185.54854 * 25 24 15 38 38 H 1.09007 * 109.35698 * 65.50364 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5459 1.4402 0.7000 7 6 2.0081 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0011 13 6 2.4351 -5.9486 -0.0004 14 6 1.7364 -7.3115 0.0337 15 7 0.7854 -7.3835 -1.0840 16 16 0.8397 -8.6426 -2.1582 17 8 2.1630 -9.1578 -2.1060 18 8 0.2346 -8.1748 -3.3558 19 6 -0.2125 -9.9091 -1.5308 20 6 -1.5126 -10.0332 -1.8021 21 6 -2.1366 -11.1057 -1.1885 22 6 -1.3409 -11.8588 -0.4276 23 16 0.2909 -11.2029 -0.4508 24 6 -0.2106 -6.3139 -1.2341 25 6 0.5064 -4.9651 -1.2507 26 1 -0.4850 0.8401 0.0004 27 1 0.7582 -4.9299 0.8889 28 1 3.0723 -5.8444 0.8779 29 1 3.0431 -5.8740 -0.9019 30 1 1.2013 -7.4243 0.9766 31 1 2.4760 -8.1062 -0.0640 32 1 -2.0394 -9.3463 -2.4479 33 1 -3.1873 -11.3189 -1.3192 34 1 -1.6521 -12.7346 0.1224 35 1 -0.7538 -6.4490 -2.1694 36 1 -0.9078 -6.3436 -0.3968 37 1 -0.2293 -4.1608 -1.2625 38 1 1.1321 -4.8995 -2.1409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003360118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:04 Heat of formation + Delta-G solvation = -118.057288 kcal Electronic energy + Delta-G solvation = -25742.833765 eV Core-core repulsion = 21804.583903 eV Total energy + Delta-G solvation = -3938.249862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.058 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.48969 -38.22127 -37.88307 -37.35755 -36.00613 -35.15860 -32.53974 -32.04905 -31.04265 -30.26107 -26.14920 -24.82061 -24.57292 -23.26662 -21.27042 -20.57383 -19.69967 -19.32179 -18.25566 -17.72891 -17.69138 -16.51588 -16.39236 -15.90096 -15.18748 -14.82720 -14.62017 -14.61213 -14.38673 -14.21610 -13.71200 -13.50555 -13.32987 -13.17878 -12.92709 -12.90466 -12.48812 -12.22366 -12.18696 -11.95856 -11.73845 -11.62389 -11.27739 -11.22685 -11.12127 -11.09999 -10.52762 -10.48357 -10.38499 -10.28665 -9.76132 -9.74249 -9.24256 -8.96015 -8.87642 -8.55994 -6.39836 -4.07108 -0.01677 0.27624 1.06438 1.40458 2.07495 2.80701 3.12297 3.20158 3.25902 3.54040 3.55508 3.94482 4.23090 4.46501 4.47599 4.63747 4.85731 4.92661 4.99257 5.11874 5.18121 5.26766 5.38191 5.39846 5.44131 5.57408 5.61965 5.72320 5.74903 5.84741 5.94930 6.03300 6.30881 6.35984 6.55754 6.59870 6.86923 7.41728 7.97493 8.74132 9.09750 9.88350 10.78209 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.002533 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.263587 B =11049.922138 C =11315.798328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.042 3.958 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.381 4.381 8 H 0.094 0.906 9 O -0.213 6.213 10 C 0.400 3.600 11 O -0.556 6.556 12 C -0.067 4.067 13 C -0.111 4.111 14 C 0.118 3.882 15 N -0.993 5.993 16 S 2.713 3.287 17 O -0.950 6.950 18 O -0.947 6.947 19 C -0.790 4.790 20 C 0.004 3.996 21 C -0.163 4.163 22 C -0.178 4.178 23 S 0.213 5.787 24 C 0.120 3.880 25 C -0.123 4.123 26 H 0.269 0.731 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.097 0.903 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.430 -23.429 0.240 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.120 6.120 10 C 0.247 3.753 11 O -0.453 6.453 12 C -0.087 4.087 13 C -0.151 4.151 14 C -0.007 4.007 15 N -0.833 5.833 16 S 2.800 3.200 17 O -0.940 6.940 18 O -0.937 6.937 19 C -0.990 4.990 20 C -0.031 4.031 21 C -0.194 4.194 22 C -0.316 4.316 23 S 0.478 5.522 24 C -0.005 4.005 25 C -0.162 4.162 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.173 0.827 33 H 0.167 0.833 34 H 0.190 0.810 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.458 -23.739 0.191 24.154 hybrid contribution -1.555 0.835 -0.079 1.767 sum -6.013 -22.903 0.111 23.680 Atomic orbital electron populations 1.69983 1.05942 1.27590 1.46812 1.25301 0.95796 0.98790 0.96276 0.85703 0.79051 0.79900 0.78722 1.19913 1.20382 1.19169 1.21205 0.92338 0.79967 1.52258 0.88820 1.83867 1.39340 1.13322 1.75513 1.23123 0.86622 0.87148 0.78440 1.90554 1.15794 1.88081 1.50860 1.20700 0.97261 0.90395 1.00342 1.21698 0.97179 0.91638 1.04546 1.21600 0.91194 0.99316 0.88542 1.57687 1.44066 1.36338 1.45172 1.01477 0.73222 0.72168 0.73097 1.93590 1.34196 1.79888 1.86326 1.93587 1.78628 1.79664 1.41838 1.36164 1.15142 1.25067 1.22652 1.20084 0.91403 0.96550 0.95086 1.20452 1.01990 0.96521 1.00405 1.26262 0.97418 1.04315 1.03564 1.84255 1.08132 1.18345 1.41465 1.21507 0.89806 0.86151 1.03001 1.21783 0.99914 0.96840 0.97646 0.92152 0.88553 0.89666 0.90486 0.90902 0.88702 0.82690 0.83279 0.80994 0.88584 0.90724 0.88477 0.90933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.05 13.67 55.48 0.76 -24.29 16 2 C 0.04 1.18 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.31 29.55 -169.99 -5.02 16.29 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.38 -11.21 9.64 30.92 0.30 -10.91 16 8 H 0.09 2.79 6.86 -52.48 -0.36 2.43 16 9 O -0.21 -5.96 9.62 -20.72 -0.20 -6.16 16 10 C 0.40 9.62 7.20 36.01 0.26 9.88 16 11 O -0.56 -14.75 15.22 -19.06 -0.29 -15.04 16 12 C -0.07 -1.16 2.59 -91.73 -0.24 -1.40 16 13 C -0.11 -1.66 4.65 -26.61 -0.12 -1.79 16 14 C 0.12 1.35 6.48 -3.71 -0.02 1.33 16 15 N -0.99 -11.76 3.30 -113.76 -0.37 -12.13 16 16 S 2.71 34.02 5.87 -107.50 -0.63 33.39 16 17 O -0.95 -14.02 16.50 -57.17 -0.94 -14.96 16 18 O -0.95 -13.91 16.38 -57.17 -0.94 -14.85 16 19 C -0.79 -8.05 6.57 29.04 0.19 -7.86 16 20 C 0.00 0.04 9.84 -41.21 -0.41 -0.37 16 21 C -0.16 -1.13 10.18 -41.21 -0.42 -1.55 16 22 C -0.18 -1.17 11.23 29.04 0.33 -0.84 16 23 S 0.21 1.84 23.22 -107.50 -2.50 -0.66 16 24 C 0.12 1.40 6.45 -3.93 -0.03 1.38 16 25 C -0.12 -1.90 5.28 -26.83 -0.14 -2.04 16 26 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 28 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 29 H 0.08 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.00 6.92 -51.93 -0.36 0.64 16 32 H 0.16 1.13 8.05 -52.49 -0.42 0.71 16 33 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 34 H 0.17 0.62 8.06 -52.49 -0.42 0.20 16 35 H 0.10 1.03 6.91 -51.93 -0.36 0.68 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.10 1.59 8.08 -51.93 -0.42 1.17 16 38 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -36.48 350.27 -9.69 -46.17 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.43 Total: 0.06 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: -0.40 Total: -13.08 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.38 Total: -36.43 kcal Atomic # 8 Polarization: -48.64 SS G_CDS: -2.37 Total: -51.01 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 35.86 SS G_CDS: -3.13 Total: 32.73 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.48 -9.69 -46.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003360118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.887 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds