Wall clock time and date at job start Tue Mar 31 2020 06:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48491 * 109.47415 * 270.00333 * 3 2 1 5 5 H 1.48495 * 109.47118 * 30.00628 * 3 2 1 6 6 H 1.48503 * 109.47119 * 150.00043 * 3 2 1 7 7 C 1.38750 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00283 * 180.02562 * 7 2 1 9 9 O 1.34923 * 119.99868 * 359.97438 * 7 2 1 10 10 C 1.34313 * 117.00114 * 180.02562 * 9 7 2 11 11 O 1.21216 * 119.99698 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00290 * 180.02562 * 10 9 7 13 13 C 1.53038 * 109.45851 * 180.02562 * 12 10 9 14 14 C 1.53195 * 109.30921 * 178.62669 * 13 12 10 15 15 N 1.46930 * 108.77806 * 54.63324 * 14 13 12 16 16 S 1.65591 * 120.63187 * 126.36548 * 15 14 13 17 17 O 1.42100 * 106.40323 * 336.46374 * 16 15 14 18 18 O 1.42097 * 106.40600 * 203.54472 * 16 15 14 19 19 C 1.76205 * 107.21602 * 90.00482 * 16 15 14 20 20 C 1.33388 * 125.20425 * 90.00509 * 19 16 15 21 21 C 1.38421 * 114.92066 * 180.29370 * 20 19 16 22 22 C 1.33395 * 114.92147 * 359.48238 * 21 20 19 23 23 S 1.75885 * 125.20117 * 270.02125 * 19 16 15 24 24 C 1.46930 * 118.73809 * 306.64624 * 15 14 13 25 25 C 1.52762 * 109.00821 * 53.30343 * 24 15 14 26 26 H 0.97004 * 119.99937 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.45578 * 299.97242 * 12 10 9 28 28 H 1.08997 * 109.49908 * 58.67968 * 13 12 10 29 29 H 1.08997 * 109.52165 * 298.58758 * 13 12 10 30 30 H 1.09002 * 109.58762 * 294.84752 * 14 13 12 31 31 H 1.08995 * 109.70211 * 174.49148 * 14 13 12 32 32 H 1.08002 * 122.53671 * 0.02562 * 20 19 16 33 33 H 1.08001 * 122.54223 * 179.72513 * 21 20 19 34 34 H 1.07998 * 125.20353 * 180.21324 * 22 21 20 35 35 H 1.08999 * 109.58657 * 173.14120 * 24 15 14 36 36 H 1.08994 * 109.58690 * 293.56719 * 24 15 14 37 37 H 1.09002 * 109.56293 * 185.54854 * 25 24 15 38 38 H 1.09007 * 109.35698 * 65.50364 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 2.4958 2.0465 -1.4000 5 1 1.4459 2.6526 0.7001 6 1 3.5459 1.4402 0.7000 7 6 2.0081 -1.2016 -0.0005 8 1 3.0882 -1.2016 -0.0001 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2755 -3.4331 -0.0010 12 6 1.3809 -4.8393 -0.0011 13 6 2.4351 -5.9486 -0.0004 14 6 1.7364 -7.3115 0.0337 15 7 0.7854 -7.3835 -1.0840 16 16 0.8397 -8.6426 -2.1582 17 8 2.1630 -9.1578 -2.1060 18 8 0.2346 -8.1748 -3.3558 19 6 -0.2125 -9.9091 -1.5308 20 6 -1.5126 -10.0332 -1.8021 21 6 -2.1366 -11.1057 -1.1885 22 6 -1.3409 -11.8588 -0.4276 23 16 0.2909 -11.2029 -0.4508 24 6 -0.2106 -6.3139 -1.2341 25 6 0.5064 -4.9651 -1.2507 26 1 -0.4850 0.8401 0.0004 27 1 0.7582 -4.9299 0.8889 28 1 3.0723 -5.8444 0.8779 29 1 3.0431 -5.8740 -0.9019 30 1 1.2013 -7.4243 0.9766 31 1 2.4760 -8.1062 -0.0640 32 1 -2.0394 -9.3463 -2.4479 33 1 -3.1873 -11.3189 -1.3192 34 1 -1.6521 -12.7346 0.1224 35 1 -0.7538 -6.4490 -2.1694 36 1 -0.9078 -6.3436 -0.3968 37 1 -0.2293 -4.1608 -1.2625 38 1 1.1321 -4.8995 -2.1409 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003360118.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:03 Heat of formation + Delta-G solvation = -143.651061 kcal Electronic energy + Delta-G solvation = -25743.943594 eV Core-core repulsion = 21804.583903 eV Total energy + Delta-G solvation = -3939.359691 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.058 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27576 -39.27637 -38.86147 -38.34388 -37.18512 -37.05830 -34.33068 -33.70951 -32.14624 -30.86690 -27.97862 -26.23478 -25.38305 -24.40292 -22.72477 -21.34758 -21.08394 -20.04746 -19.84886 -19.26380 -18.80961 -18.31881 -17.18294 -16.84743 -16.71760 -16.44179 -16.23049 -15.86743 -15.61036 -15.29203 -14.81253 -14.64134 -14.57079 -14.17629 -13.87181 -13.76358 -13.63606 -13.50495 -13.40840 -13.24749 -13.10150 -13.05868 -12.58763 -12.52693 -12.34990 -12.22250 -12.17963 -12.01988 -11.83952 -11.66060 -11.60356 -10.92922 -10.68091 -10.36792 -10.10834 -9.56853 -8.52931 -6.31913 -0.84179 -0.45276 0.41820 0.84786 1.30944 1.34240 1.50063 1.50618 1.65707 1.92375 2.12438 2.63337 2.76200 2.98120 3.26525 3.58078 3.75716 3.94543 4.04419 4.07850 4.16332 4.33819 4.36792 4.43242 4.48833 4.68862 4.73788 4.79077 4.83938 4.88351 4.95662 5.05487 5.14666 5.15866 5.24170 5.30330 5.32788 5.53907 5.85018 6.69603 6.92841 7.79457 8.67364 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.026679 B = 0.002533 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.263587 B =11049.922138 C =11315.798328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.001 4.001 3 Si 1.013 2.987 4 H -0.262 1.262 5 H -0.258 1.258 6 H -0.266 1.266 7 C -0.422 4.422 8 H 0.076 0.924 9 O -0.239 6.239 10 C 0.396 3.604 11 O -0.587 6.587 12 C -0.060 4.060 13 C -0.109 4.109 14 C 0.124 3.876 15 N -0.995 5.995 16 S 2.725 3.275 17 O -0.980 6.980 18 O -0.977 6.977 19 C -0.810 4.810 20 C 0.009 3.991 21 C -0.171 4.171 22 C -0.156 4.156 23 S 0.191 5.809 24 C 0.127 3.873 25 C -0.121 4.121 26 H 0.278 0.722 27 H 0.125 0.875 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.109 0.891 31 H 0.104 0.896 32 H 0.165 0.835 33 H 0.179 0.821 34 H 0.206 0.794 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.330 -25.007 1.257 26.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.202 4.202 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.498 4.498 8 H 0.094 0.906 9 O -0.147 6.147 10 C 0.244 3.756 11 O -0.485 6.485 12 C -0.079 4.079 13 C -0.149 4.149 14 C -0.001 4.001 15 N -0.835 5.835 16 S 2.817 3.183 17 O -0.971 6.971 18 O -0.967 6.967 19 C -1.014 5.014 20 C -0.027 4.027 21 C -0.201 4.201 22 C -0.294 4.294 23 S 0.456 5.544 24 C 0.002 3.998 25 C -0.161 4.161 26 H 0.088 0.912 27 H 0.143 0.857 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.183 0.817 33 H 0.196 0.804 34 H 0.223 0.777 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.342 -25.310 1.190 26.119 hybrid contribution -1.005 1.180 -0.392 1.598 sum -7.346 -24.130 0.798 25.236 Atomic orbital electron populations 1.70053 1.07414 1.29276 1.46862 1.26433 0.96879 1.02087 0.94787 0.84692 0.77729 0.74961 0.79410 1.18710 1.18214 1.19047 1.21352 0.91987 0.81479 1.54955 0.90578 1.83892 1.40128 1.14025 1.76644 1.24589 0.86657 0.88454 0.75901 1.90517 1.17484 1.88712 1.51758 1.20904 0.98013 0.86638 1.02381 1.21702 0.96692 0.93072 1.03401 1.21657 0.91612 0.96864 0.89933 1.57597 1.44283 1.36549 1.45026 1.00651 0.72703 0.72326 0.72629 1.93546 1.36350 1.80424 1.86747 1.93544 1.78992 1.80508 1.43663 1.35588 1.15404 1.25369 1.25017 1.20442 0.90898 0.97003 0.94402 1.20752 1.03435 0.95827 1.00095 1.26697 0.95584 1.04576 1.02557 1.84357 1.10217 1.18381 1.41400 1.21532 0.89574 0.83506 1.05139 1.21754 0.99258 0.99246 0.95794 0.91216 0.85737 0.89616 0.93000 0.87318 0.87793 0.81728 0.80417 0.77715 0.87559 0.87335 0.89675 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.55 13.67 21.62 0.30 -52.25 16 2 C 0.00 -0.07 5.49 84.87 0.47 0.39 16 3 Si 1.01 43.77 29.55 68.60 2.03 45.80 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 7 C -0.42 -25.76 9.64 67.94 0.66 -25.11 16 8 H 0.08 4.78 6.86 -2.91 -0.02 4.76 16 9 O -0.24 -13.91 9.62 14.82 0.14 -13.77 16 10 C 0.40 19.80 7.20 71.24 0.51 20.31 16 11 O -0.59 -32.62 15.22 20.76 0.32 -32.31 16 12 C -0.06 -2.08 2.59 -11.51 -0.03 -2.11 16 13 C -0.11 -3.27 4.65 30.67 0.14 -3.13 16 14 C 0.12 2.63 6.48 86.36 0.56 3.18 16 15 N -1.00 -22.29 3.30 -513.83 -1.69 -23.98 16 16 S 2.73 66.82 5.87 -56.49 -0.33 66.49 16 17 O -0.98 -29.11 16.50 -128.00 -2.11 -31.22 16 18 O -0.98 -28.62 16.38 -128.00 -2.10 -30.72 16 19 C -0.81 -15.03 6.57 66.72 0.44 -14.60 16 20 C 0.01 0.13 9.84 21.22 0.21 0.34 16 21 C -0.17 -1.71 10.18 21.22 0.22 -1.50 16 22 C -0.16 -1.44 11.23 66.72 0.75 -0.69 16 23 S 0.19 2.90 23.22 -56.49 -1.31 1.58 16 24 C 0.13 2.77 6.45 86.22 0.56 3.33 16 25 C -0.12 -3.79 5.28 30.53 0.16 -3.63 16 26 H 0.28 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 28 H 0.09 2.53 8.07 -2.39 -0.02 2.51 16 29 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 2.07 6.92 -2.39 -0.02 2.06 16 32 H 0.17 1.99 8.05 -2.91 -0.02 1.97 16 33 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 34 H 0.21 0.46 8.06 -2.91 -0.02 0.43 16 35 H 0.11 2.15 6.91 -2.39 -0.02 2.13 16 36 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.08 2.86 8.08 -2.39 -0.02 2.84 16 38 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -82.99 350.27 0.96 -82.02 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 1.09 Total: 11.56 kcal Atomic # 6 Polarization: -27.85 SS G_CDS: 4.64 Total: -23.21 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -1.40 Total: -76.23 kcal Atomic # 8 Polarization: -104.26 SS G_CDS: -3.75 Total: -108.01 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 69.72 SS G_CDS: -1.64 Total: 68.07 kcal Total: -82.99 0.96 -82.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003360118.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.628 kcal (2) G-P(sol) polarization free energy of solvation -82.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds