Wall clock time and date at job start Tue Mar 31 2020 05:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47285 * 2 1 4 4 C 1.52994 * 109.47458 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47458 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47321 * 179.97438 * 5 4 3 7 7 O 1.21290 * 119.99917 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00202 * 179.97438 * 6 5 4 9 9 C 1.39761 * 120.00268 * 174.67510 * 8 6 5 10 10 C 1.39034 * 119.93807 * 326.57730 * 9 8 6 11 11 C 1.37806 * 120.06656 * 179.76204 * 10 9 8 12 12 C 1.39556 * 119.93144 * 0.53657 * 11 10 9 13 13 C 1.48139 * 120.06240 * 179.70025 * 12 11 10 14 14 C 1.37291 * 122.47778 * 0.02562 * 13 12 11 15 15 S 1.71002 * 109.07744 * 179.97438 * 14 13 12 16 16 C 1.75984 * 90.64015 * 0.02562 * 15 14 13 17 17 C 1.39857 * 125.28681 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99813 * 186.60716 * 17 16 15 19 19 C 1.40145 * 120.00061 * 6.60775 * 17 16 15 20 20 N 1.30759 * 119.99878 * 353.43802 * 19 17 16 21 21 Si 1.86796 * 120.00176 * 173.43914 * 19 17 16 22 22 H 1.48503 * 109.46913 * 94.98288 * 21 19 17 23 23 H 1.48501 * 109.47278 * 214.98492 * 21 19 17 24 24 H 1.48502 * 109.46999 * 334.98397 * 21 19 17 25 25 N 1.31260 * 122.48213 * 179.72782 * 13 12 11 26 26 C 1.39552 * 119.87731 * 359.71735 * 12 11 10 27 27 C 1.37799 * 119.94073 * 0.02562 * 26 12 11 28 28 H 1.08992 * 109.47164 * 59.99840 * 1 2 3 29 29 H 1.08998 * 109.47107 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46709 * 299.99979 * 1 2 3 31 31 H 1.09003 * 109.46982 * 240.00455 * 2 1 3 32 32 H 1.09003 * 109.47406 * 119.99746 * 2 1 3 33 33 H 1.09001 * 109.47295 * 59.99794 * 3 2 1 34 34 H 1.09000 * 109.47096 * 300.00495 * 3 2 1 35 35 H 1.09001 * 109.47163 * 59.99556 * 4 3 2 36 36 H 1.09003 * 109.47192 * 299.99720 * 4 3 2 37 37 H 1.09001 * 109.47295 * 59.99637 * 5 4 3 38 38 H 1.09000 * 109.47096 * 300.00338 * 5 4 3 39 39 H 0.97006 * 119.99641 * 354.95591 * 8 6 5 40 40 H 1.08007 * 119.97043 * 0.02562 * 10 9 8 41 41 H 1.08001 * 120.03660 * 180.28368 * 11 10 9 42 42 H 1.07999 * 125.46160 * 359.93938 * 14 13 12 43 43 H 0.96993 * 119.99506 * 180.02562 * 20 19 17 44 44 H 1.08002 * 120.03233 * 180.02562 * 26 12 11 45 45 H 1.08000 * 119.97339 * 180.02562 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 6 5.5870 2.8850 0.0000 7 8 6.1934 1.8346 -0.0009 8 7 6.2609 4.0522 0.0000 9 6 7.6540 4.0548 0.1123 10 6 8.2905 3.0825 0.8755 11 6 9.6642 3.0796 0.9841 12 6 10.4159 4.0608 0.3362 13 6 11.8925 4.0644 0.4563 14 6 12.5746 3.1267 1.1914 15 16 14.2506 3.4519 1.0947 16 6 13.9412 4.8435 0.0629 17 6 14.9204 5.6891 -0.4683 18 1 14.6309 6.5810 -1.0040 19 6 16.2774 5.3790 -0.3054 20 7 16.6318 4.3723 0.4501 21 14 17.5797 6.4037 -1.1675 22 1 18.0736 7.4558 -0.2432 23 1 18.7100 5.5295 -1.5717 24 1 16.9907 7.0404 -2.3729 25 7 12.6458 4.9610 -0.1367 26 6 9.7741 5.0387 -0.4249 27 6 8.4005 5.0335 -0.5343 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9330 0.9288 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.7170 3.3984 0.8904 38 1 3.7163 3.3994 -0.8895 39 1 5.7787 4.8907 -0.0739 40 1 7.7079 2.3260 1.3804 41 1 10.1584 2.3213 1.5733 42 1 12.1247 2.3144 1.7428 43 1 17.5710 4.1579 0.5630 44 1 10.3535 5.7990 -0.9277 45 1 7.9033 5.7899 -1.1235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000003433804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:39 Heat of formation + Delta-G solvation = -19.413243 kcal Electronic energy + Delta-G solvation = -25272.535044 eV Core-core repulsion = 21572.503608 eV Total energy + Delta-G solvation = -3700.031435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.130 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.47589 -38.61987 -37.16664 -36.26772 -34.70324 -34.00920 -32.60637 -30.71571 -30.25421 -28.45171 -27.25687 -26.24612 -23.78660 -22.88501 -22.18668 -21.36214 -21.14721 -20.17345 -18.53917 -17.82650 -17.53579 -16.96269 -16.44622 -15.81022 -15.32113 -15.19081 -14.85953 -14.60671 -14.15958 -13.93021 -13.63035 -13.57946 -13.45987 -13.13378 -13.02648 -12.89659 -12.42300 -12.20204 -12.08982 -12.07822 -11.90222 -11.47092 -11.42380 -11.36627 -11.28258 -11.17134 -10.90477 -10.85183 -10.56898 -10.40347 -10.24097 -9.82971 -9.60136 -9.48613 -8.51318 -8.16868 -7.84876 -7.81013 -7.11137 -6.80227 -4.75557 1.42151 1.88431 2.43783 2.64358 2.92295 2.97751 3.00299 3.07517 3.47806 3.67328 3.92524 3.99096 4.36126 4.43589 4.52909 4.55170 4.79998 4.82106 4.95024 5.17516 5.18255 5.22277 5.27042 5.37725 5.40366 5.42444 5.52472 5.54373 5.64445 5.71006 5.81150 5.85882 5.88976 5.95224 5.96442 6.06914 6.44772 6.52667 6.62432 6.69178 6.80282 6.84982 6.94528 7.35619 7.38683 7.45953 7.53036 7.87861 8.07936 8.29826 8.38238 9.68969 9.79627 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.036379 B = 0.001622 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.500058 B =17253.310435 C =17769.193860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.106 4.106 5 C -0.139 4.139 6 C 0.506 3.494 7 O -0.520 6.520 8 N -0.672 5.672 9 C 0.120 3.880 10 C -0.121 4.121 11 C -0.096 4.096 12 C 0.000 4.000 13 C 0.132 3.868 14 C -0.445 4.445 15 S 0.119 5.881 16 C 0.204 3.796 17 C -0.376 4.376 18 H 0.103 0.897 19 C 0.056 3.944 20 N -0.781 5.781 21 Si 0.941 3.059 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.256 1.256 25 N -0.589 5.589 26 C -0.078 4.078 27 C -0.147 4.147 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.407 0.593 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.298 0.702 44 H 0.136 0.864 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.573 -1.428 -0.193 21.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C -0.144 4.144 5 C -0.179 4.179 6 C 0.294 3.706 7 O -0.394 6.394 8 N -0.317 5.317 9 C 0.026 3.974 10 C -0.141 4.141 11 C -0.116 4.116 12 C -0.003 4.003 13 C -0.007 4.007 14 C -0.590 4.590 15 S 0.380 5.620 16 C -0.050 4.050 17 C -0.419 4.419 18 H 0.121 0.879 19 C -0.167 4.167 20 N -0.410 5.410 21 Si 0.764 3.236 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.180 1.180 25 N -0.311 5.311 26 C -0.098 4.098 27 C -0.168 4.168 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.242 0.758 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.111 0.889 44 H 0.154 0.846 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.224 -2.426 0.025 20.369 hybrid contribution -0.652 0.684 -0.364 1.013 sum -20.876 -1.742 -0.339 20.952 Atomic orbital electron populations 1.21778 0.95950 1.01588 1.01703 1.21529 0.95702 0.96848 1.02315 1.21633 0.95029 0.97059 1.02024 1.21377 0.94723 0.94479 1.03863 1.21701 0.91183 1.00485 1.04500 1.20909 0.90442 0.83468 0.75789 1.90744 1.70223 1.31115 1.47368 1.43485 1.05653 1.09436 1.73091 1.17675 0.81953 0.98630 0.99103 1.20868 0.94440 0.99388 0.99358 1.21076 0.92713 0.98293 0.99500 1.18553 0.91274 0.94263 0.96188 1.18705 0.91906 0.93033 0.97078 1.26435 1.02755 1.10651 1.19181 1.84201 0.98941 1.29515 1.49328 1.23831 0.91558 0.94911 0.94686 1.18952 0.88518 1.06920 1.27463 0.87877 1.26168 1.00479 0.95523 0.94500 1.68826 1.20694 1.23254 1.28199 0.85711 0.78351 0.79403 0.80120 1.19018 1.19653 1.17991 1.67265 1.02534 1.29596 1.31690 1.21149 0.92749 0.98398 0.97517 1.20753 0.94122 1.00265 1.01635 0.92815 0.92824 0.92806 0.91910 0.91908 0.91946 0.91957 0.91056 0.91068 0.88698 0.88800 0.75814 0.85445 0.85787 0.84936 0.88887 0.84620 0.86248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.13 -0.79 5.93 -26.73 -0.16 -0.94 16 3 C -0.12 -0.72 5.21 -26.73 -0.14 -0.85 16 4 C -0.11 -0.84 4.50 -26.73 -0.12 -0.96 16 5 C -0.14 -0.99 5.70 -27.88 -0.16 -1.14 16 6 C 0.51 5.93 7.56 -10.99 -0.08 5.85 16 7 O -0.52 -8.36 13.67 5.55 0.08 -8.28 16 8 N -0.67 -7.57 5.33 -9.82 -0.05 -7.62 16 9 C 0.12 1.84 6.28 -83.65 -0.53 1.32 16 10 C -0.12 -2.09 8.64 -39.44 -0.34 -2.43 16 11 C -0.10 -1.85 9.47 -39.25 -0.37 -2.22 16 12 C 0.00 0.01 5.88 -104.85 -0.62 -0.61 16 13 C 0.13 3.33 6.65 -84.39 -0.56 2.76 16 14 C -0.45 -11.03 10.41 30.39 0.32 -10.71 16 15 S 0.12 3.05 20.15 -107.50 -2.17 0.88 16 16 C 0.20 5.57 7.10 -17.05 -0.12 5.45 16 17 C -0.38 -9.67 9.43 -38.26 -0.36 -10.03 16 18 H 0.10 2.55 7.86 -52.49 -0.41 2.14 16 19 C 0.06 1.29 5.49 -17.29 -0.09 1.20 16 20 N -0.78 -18.60 10.68 55.56 0.59 -18.01 16 21 Si 0.94 17.32 29.57 -169.99 -5.03 12.29 16 22 H -0.27 -4.78 7.11 56.52 0.40 -4.37 16 23 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 24 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 25 N -0.59 -15.95 10.01 -9.50 -0.10 -16.05 16 26 C -0.08 -1.51 9.62 -39.25 -0.38 -1.89 16 27 C -0.15 -2.30 9.94 -39.45 -0.39 -2.69 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.41 3.01 8.82 -40.82 -0.36 2.65 16 40 H 0.13 2.16 6.41 -52.48 -0.34 1.82 16 41 H 0.12 2.29 6.60 -52.49 -0.35 1.95 16 42 H 0.13 2.98 6.84 -52.49 -0.36 2.62 16 43 H 0.30 6.34 8.29 -40.82 -0.34 6.00 16 44 H 0.14 2.70 7.67 -52.49 -0.40 2.29 16 45 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 LS Contribution 388.49 15.07 5.85 5.85 Total: -1.00 -30.97 388.49 -10.97 -41.95 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -6.42 Total: 7.33 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.74 Total: -18.34 kcal Atomic # 7 Polarization: -42.12 SS G_CDS: 0.45 Total: -41.68 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.08 Total: -8.28 kcal Atomic # 14 Polarization: 17.32 SS G_CDS: -5.03 Total: 12.29 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.17 Total: 0.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.97 -10.97 -41.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003433804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.532 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds