Wall clock time and date at job start Tue Mar 31 2020 06:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29391 * 1 3 3 Si 1.86801 * 119.99659 * 2 1 4 4 H 1.48501 * 109.47059 * 239.99278 * 3 2 1 5 5 H 1.48496 * 109.47314 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47403 * 119.99598 * 3 2 1 7 7 C 1.46580 * 120.00472 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00312 * 180.02562 * 7 2 1 9 9 O 1.22326 * 119.99975 * 0.02562 * 7 2 1 10 10 C 1.35552 * 117.00267 * 174.49788 * 9 7 2 11 11 C 1.38749 * 120.16514 * 353.99051 * 10 9 7 12 12 C 1.38113 * 120.09072 * 180.27257 * 11 10 9 13 13 C 1.38567 * 120.43038 * 359.97438 * 12 11 10 14 14 C 1.37848 * 120.33362 * 0.02562 * 13 12 11 15 15 C 1.39791 * 119.90497 * 359.97438 * 14 13 12 16 16 C 1.47084 * 120.21616 * 179.97438 * 15 14 13 17 17 C 1.34677 * 119.99895 * 0.02996 * 16 15 14 18 18 C 1.46932 * 119.99948 * 179.97438 * 17 16 15 19 19 N 1.34464 * 120.21595 * 6.22337 * 18 17 16 20 20 C 1.31212 * 121.16529 * 179.97438 * 19 18 17 21 21 O 1.34905 * 119.23472 * 180.02562 * 20 19 18 22 22 N 1.35950 * 121.53394 * 0.02665 * 20 19 18 23 23 H 0.96996 * 119.85208 * 179.97438 * 22 20 19 24 24 C 1.34918 * 120.29217 * 359.95220 * 22 20 19 25 25 O 1.22069 * 120.56945 * 180.02562 * 24 22 20 26 26 C 1.39189 * 120.20959 * 185.94775 * 18 17 16 27 27 N 1.48037 * 120.71528 * 0.02562 * 26 18 17 28 28 O 1.31700 * 119.99665 * 6.22402 * 27 26 18 29 29 O 1.31699 * 120.00067 * 186.23011 * 27 26 18 30 30 H 0.97002 * 120.00325 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.95972 * 0.27053 * 11 10 9 32 32 H 1.07997 * 119.78536 * 180.02562 * 12 11 10 33 33 H 1.07995 * 119.83362 * 180.02562 * 13 12 11 34 34 H 1.08002 * 120.04587 * 180.02562 * 14 13 12 35 35 H 1.08003 * 120.00266 * 180.02562 * 16 15 14 36 36 H 1.07997 * 119.99411 * 359.97438 * 17 16 15 37 37 H 0.96706 * 113.99975 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2939 0.0000 0.0000 3 14 2.2278 1.6178 0.0000 4 1 3.0817 1.6964 -1.2124 5 1 1.2628 2.7465 -0.0006 6 1 3.0815 1.6966 1.2125 7 6 2.0269 -1.2694 0.0006 8 1 3.1070 -1.2693 0.0010 9 8 1.4154 -2.3288 0.0006 10 6 2.1489 -3.4628 -0.1147 11 6 3.5142 -3.3891 -0.3507 12 6 4.2591 -4.5456 -0.4735 13 6 3.6524 -5.7864 -0.3620 14 6 2.2972 -5.8802 -0.1277 15 6 1.5298 -4.7186 -0.0010 16 6 0.0832 -4.8107 0.2485 17 6 -0.5060 -6.0169 0.3564 18 6 -1.9510 -6.1089 0.6062 19 7 -2.7102 -4.9991 0.6038 20 6 -4.0023 -5.0597 0.8242 21 8 -4.7268 -3.9218 0.8122 22 7 -4.6278 -6.2426 1.0643 23 1 -5.5843 -6.2591 1.2246 24 6 -3.9242 -7.3937 1.0802 25 8 -4.4808 -8.4587 1.2949 26 6 -2.5437 -7.3462 0.8413 27 7 -1.7329 -8.5847 0.8442 28 8 -0.4215 -8.5134 0.7455 29 8 -2.3228 -9.7578 0.9455 30 1 -0.4851 0.8400 -0.0004 31 1 3.9951 -2.4261 -0.4386 32 1 5.3216 -4.4825 -0.6567 33 1 4.2442 -6.6845 -0.4592 34 1 1.8292 -6.8497 -0.0412 35 1 -0.5064 -3.9111 0.3454 36 1 0.0836 -6.9165 0.2592 37 1 -4.2066 -3.1261 0.6347 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004565351.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:34 Heat of formation + Delta-G solvation = 43.469985 kcal Electronic energy + Delta-G solvation = -29012.504469 eV Core-core repulsion = 24535.354884 eV Total energy + Delta-G solvation = -4477.149585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.088 amu Computer time = 3.37 seconds Orbital eigenvalues (eV) -41.94498 -40.92197 -39.13199 -38.01346 -37.56514 -37.08643 -34.92833 -33.57424 -33.54659 -33.01573 -31.06146 -29.57373 -29.09673 -26.18512 -25.85213 -24.72634 -23.61643 -22.43237 -21.56948 -20.02913 -19.56607 -19.20143 -18.97911 -18.40547 -17.69308 -16.80343 -16.74397 -16.54861 -15.84880 -15.49295 -15.17534 -15.07085 -15.04520 -14.89994 -14.59599 -14.26000 -13.98954 -13.76088 -13.19271 -12.79594 -12.59597 -12.51162 -11.92561 -11.88819 -11.49136 -11.23086 -11.15561 -11.04259 -10.97507 -10.71947 -10.40526 -10.14525 -9.96452 -9.87284 -9.72975 -9.63688 -9.57437 -8.85644 -8.03885 -7.63323 -7.36903 -4.17685 -0.49599 0.95128 1.34529 1.46437 1.88187 2.13383 2.14043 2.58643 2.64358 2.68367 2.93041 3.25271 3.27161 3.64215 3.95801 4.04170 4.27317 4.43731 4.65276 4.90931 5.26507 5.49114 5.54352 5.68304 5.70948 5.94469 5.97442 6.01715 6.17015 6.19795 6.47122 6.53112 6.59861 6.64627 6.76225 6.88554 7.03243 7.16234 7.21670 7.36002 7.51218 7.54008 7.59780 7.70872 7.80962 9.07240 9.52067 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011064 B = 0.003479 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.061799 B = 8047.360279 C =10546.149596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.038 3.962 3 Si 0.954 3.046 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.347 4.347 8 H 0.105 0.895 9 O -0.067 6.067 10 C 0.089 3.911 11 C -0.225 4.225 12 C -0.052 4.052 13 C -0.229 4.229 14 C -0.023 4.023 15 C -0.181 4.181 16 C 0.063 3.937 17 C -0.265 4.265 18 C 0.340 3.660 19 N -0.573 5.573 20 C 0.612 3.388 21 O -0.446 6.446 22 N -0.631 5.631 23 H 0.425 0.575 24 C 0.574 3.426 25 O -0.489 6.489 26 C -0.256 4.256 27 N 0.053 4.947 28 O -0.240 6.240 29 O -0.215 6.215 30 H 0.299 0.701 31 H 0.126 0.874 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.180 0.820 37 H 0.447 0.553 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.428 4.599 -0.261 5.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.390 5.390 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.181 1.181 5 H -0.192 1.192 6 H -0.181 1.181 7 C -0.425 4.425 8 H 0.122 0.878 9 O 0.043 5.957 10 C 0.030 3.970 11 C -0.243 4.243 12 C -0.071 4.071 13 C -0.248 4.248 14 C -0.041 4.041 15 C -0.183 4.183 16 C 0.042 3.958 17 C -0.285 4.285 18 C 0.219 3.781 19 N -0.317 5.317 20 C 0.310 3.690 21 O -0.243 6.243 22 N -0.287 5.287 23 H 0.266 0.734 24 C 0.371 3.629 25 O -0.362 6.362 26 C -0.359 4.359 27 N 0.502 4.498 28 O -0.408 6.408 29 O -0.394 6.394 30 H 0.112 0.888 31 H 0.143 0.857 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.196 0.804 37 H 0.309 0.691 Dipole moment (debyes) X Y Z Total from point charges -3.503 4.976 -0.144 6.088 hybrid contribution 0.100 0.506 0.075 0.521 sum -3.404 5.482 -0.069 6.453 Atomic orbital electron populations 1.68885 1.08250 1.31755 1.30144 1.27305 0.95569 0.99751 0.95595 0.85506 0.79422 0.76777 0.80793 1.18086 1.19168 1.18067 1.21579 0.94174 0.82650 1.44048 0.87807 1.80254 1.38446 1.12536 1.64480 1.19288 0.90389 0.85125 1.02238 1.20808 0.93628 0.98906 1.10994 1.20859 0.98402 0.92237 0.95607 1.20576 0.94944 0.96926 1.12336 1.21196 0.93491 0.96973 0.92412 1.17756 0.92638 0.90401 1.17502 1.22497 0.92799 0.97715 0.82774 1.22813 0.89037 1.01477 1.15201 1.19691 0.94492 0.83960 0.79910 1.69041 1.00637 1.29325 1.32724 1.20372 0.85406 0.81720 0.81472 1.84631 1.38480 1.16128 1.85066 1.44126 1.14885 1.04853 1.64812 0.73429 1.15553 0.86145 0.82568 0.78630 1.91135 1.71076 1.25641 1.48394 1.21010 0.91311 0.85049 1.38579 1.49111 1.02010 1.02497 0.96177 1.95978 0.89715 1.94425 1.60713 1.96272 1.73947 1.10713 1.58485 0.88785 0.85678 0.87196 0.87070 0.85349 0.85111 0.80426 0.69104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 55. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -15.83 13.66 55.99 0.76 -15.07 16 2 C 0.04 0.76 5.69 -15.22 -0.09 0.67 16 3 Si 0.95 14.47 29.64 -169.99 -5.04 9.43 16 4 H -0.26 -3.84 7.11 56.52 0.40 -3.44 16 5 H -0.27 -3.92 7.11 56.52 0.40 -3.52 16 6 H -0.26 -3.85 7.11 56.52 0.40 -3.45 16 7 C -0.35 -7.23 9.43 34.09 0.32 -6.91 16 8 H 0.10 1.98 5.12 -52.48 -0.27 1.72 16 9 O -0.07 -1.47 8.47 21.50 0.18 -1.29 16 10 C 0.09 1.80 6.60 -38.55 -0.25 1.54 16 11 C -0.22 -4.08 9.07 -39.44 -0.36 -4.44 16 12 C -0.05 -0.84 10.03 -39.51 -0.40 -1.24 16 13 C -0.23 -3.74 10.03 -39.60 -0.40 -4.14 16 14 C -0.02 -0.40 9.41 -39.14 -0.37 -0.77 16 15 C -0.18 -3.50 5.88 -104.89 -0.62 -4.12 16 16 C 0.06 1.18 9.20 -37.26 -0.34 0.84 16 17 C -0.27 -4.89 8.64 -37.32 -0.32 -5.21 16 18 C 0.34 5.99 6.71 -82.84 -0.56 5.43 16 19 N -0.57 -8.39 9.32 -11.03 -0.10 -8.49 16 20 C 0.61 7.00 8.90 -88.95 -0.79 6.21 16 21 O -0.45 -3.32 13.61 -16.44 -0.22 -3.54 16 22 N -0.63 -7.62 5.28 -16.43 -0.09 -7.71 16 23 H 0.43 3.73 8.91 -40.82 -0.36 3.36 16 24 C 0.57 9.89 7.71 -15.47 -0.12 9.77 16 25 O -0.49 -9.83 16.17 -16.37 -0.26 -10.09 16 26 C -0.26 -4.91 6.97 -78.86 -0.55 -5.46 16 27 N 0.05 1.17 4.99 34.49 0.17 1.34 16 28 O -0.24 -5.16 15.96 -31.57 -0.50 -5.67 16 29 O -0.21 -5.04 18.21 -38.94 -0.71 -5.75 16 30 H 0.30 5.43 8.26 -40.82 -0.34 5.09 16 31 H 0.13 2.12 5.78 -52.48 -0.30 1.82 16 32 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 34 H 0.13 2.16 6.17 -52.49 -0.32 1.84 16 35 H 0.13 2.51 7.02 -52.48 -0.37 2.14 16 36 H 0.18 3.41 2.71 -53.39 -0.14 3.27 16 37 H 0.45 1.96 8.94 45.56 0.41 2.37 16 LS Contribution 339.92 15.07 5.12 5.12 Total: -1.00 -29.32 339.92 -6.87 -36.19 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -1.34 Total: 13.34 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -4.84 Total: -7.81 kcal Atomic # 7 Polarization: -30.67 SS G_CDS: 0.75 Total: -29.93 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.52 Total: -26.34 kcal Atomic # 14 Polarization: 14.47 SS G_CDS: -5.04 Total: 9.43 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.32 -6.87 -36.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004565351.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.658 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.37 seconds