Wall clock time and date at job start Tue Mar 31 2020 05:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38852 * 127.87413 * 2.62485 * 3 2 1 5 5 N 1.37734 * 126.50226 * 0.03936 * 4 3 2 6 6 N 1.36808 * 106.99537 * 179.90685 * 4 3 2 7 7 C 1.39631 * 124.16575 * 180.10997 * 6 4 3 8 8 C 1.39062 * 120.08368 * 302.69900 * 7 6 4 9 9 C 1.38038 * 119.91529 * 179.69610 * 8 7 6 10 10 C 1.38348 * 120.08174 * 0.58034 * 9 8 7 11 11 N 1.48017 * 119.91493 * 179.74337 * 10 9 8 12 12 O 1.31693 * 120.00296 * 179.97438 * 11 10 9 13 13 O 1.31700 * 120.00020 * 359.97438 * 11 10 9 14 14 C 1.38308 * 120.17337 * 359.71626 * 10 9 8 15 15 C 1.38084 * 120.08054 * 359.97438 * 14 10 9 16 16 N 1.48022 * 120.04079 * 180.02562 * 15 14 10 17 17 O 1.21796 * 119.99853 * 354.16984 * 16 15 14 18 18 O 1.21805 * 119.99852 * 174.16513 * 16 15 14 19 19 N 1.28177 * 111.67548 * 0.39089 * 6 4 3 20 20 C 1.33507 * 110.98570 * 359.75550 * 19 6 4 21 21 C 1.39565 * 126.95228 * 179.97438 * 20 19 6 22 22 H 1.08001 * 119.99846 * 173.72870 * 21 20 19 23 23 C 1.46494 * 120.00182 * 353.72870 * 21 20 19 24 24 N 1.29549 * 119.99574 * 6.51528 * 23 21 20 25 25 Si 1.86792 * 120.00041 * 186.51245 * 23 21 20 26 26 H 1.48505 * 109.47021 * 90.00148 * 25 23 21 27 27 H 1.48503 * 109.46980 * 210.00045 * 25 23 21 28 28 H 1.48500 * 109.47175 * 330.00236 * 25 23 21 29 29 H 0.97005 * 120.00389 * 4.52953 * 5 4 3 30 30 H 0.97001 * 119.99723 * 184.53158 * 5 4 3 31 31 H 1.07998 * 120.03818 * 0.02562 * 8 7 6 32 32 H 1.07993 * 119.95389 * 180.32340 * 9 8 7 33 33 H 1.07999 * 119.96012 * 180.02562 * 14 10 9 34 34 H 0.97005 * 119.99529 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.4210 -1.0939 -0.0502 5 7 3.0506 -2.4191 -0.1117 6 7 4.6990 -0.6061 -0.0300 7 6 5.8438 -1.4047 -0.0695 8 6 6.0451 -2.3829 0.8982 9 6 7.1749 -3.1745 0.8521 10 6 8.1123 -2.9877 -0.1481 11 7 9.3253 -3.8349 -0.1906 12 8 10.2184 -3.6589 -1.1422 13 8 9.5114 -4.7648 0.7233 14 6 7.9187 -2.0117 -1.1087 15 6 6.7878 -1.2201 -1.0730 16 7 6.5812 -0.1763 -2.1020 17 8 7.4558 0.0571 -2.9168 18 8 5.5365 0.4492 -2.1337 19 7 4.7163 0.6738 0.0355 20 6 3.4763 1.1681 0.0602 21 6 3.1105 2.5132 0.1293 22 1 2.0718 2.7955 0.0408 23 6 4.1354 3.5421 0.3219 24 7 5.3897 3.2186 0.3016 25 14 3.6337 5.3203 0.5964 26 1 3.4654 5.5681 2.0509 27 1 4.6860 6.2200 0.0594 28 1 2.3509 5.5863 -0.1027 29 1 2.1136 -2.6578 -0.1896 30 1 3.7268 -3.1137 -0.0770 31 1 5.3157 -2.5265 1.6816 32 1 7.3293 -3.9379 1.6003 33 1 8.6524 -1.8691 -1.8883 34 1 6.0683 3.8998 0.4295 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004583565.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:58 Heat of formation + Delta-G solvation = 183.608692 kcal Electronic energy + Delta-G solvation = -29446.577861 eV Core-core repulsion = 24969.683465 eV Total energy + Delta-G solvation = -4476.894396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 3.07 seconds Orbital eigenvalues (eV) -42.08087 -41.09437 -39.93931 -38.17559 -35.98591 -35.75021 -34.99479 -34.43931 -34.11445 -33.07018 -32.16005 -30.35974 -28.25620 -27.39712 -26.53012 -25.33841 -23.50769 -22.38658 -21.79394 -20.71738 -19.47623 -18.46472 -18.44496 -17.80181 -17.76358 -17.28410 -17.26989 -16.90262 -16.04636 -15.96360 -15.86858 -15.30507 -14.94822 -14.64997 -14.43062 -13.66809 -13.34294 -13.23359 -12.70828 -12.48007 -12.34747 -12.15317 -11.67453 -11.49805 -11.35899 -11.33139 -11.22286 -11.12951 -10.87872 -10.71490 -10.59851 -10.53726 -10.40416 -10.19113 -10.03281 -9.61655 -9.07091 -8.29173 -7.30834 -7.24924 -4.77650 -1.00896 -0.11589 0.63788 0.97966 1.54799 1.80221 2.16262 2.56102 2.69211 2.83427 2.84929 2.89047 3.33246 3.50436 3.57703 3.67707 3.99757 4.10416 4.16844 4.37093 4.40286 4.80034 4.87857 4.98207 5.02400 5.25733 5.39519 5.53844 5.65250 5.90643 6.05126 6.23443 6.44071 6.72540 6.83856 6.95874 7.35155 7.52798 7.79368 7.88843 8.24243 8.27058 8.34538 9.42534 9.63912 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.012491 B = 0.004003 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.142382 B = 6992.210056 C = 8210.812040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C 0.320 3.680 3 C -0.253 4.253 4 C 0.359 3.641 5 N -0.845 5.845 6 N -0.258 5.258 7 C 0.241 3.759 8 C -0.137 4.137 9 C -0.008 4.008 10 C -0.049 4.049 11 N 0.000 5.000 12 O -0.190 6.190 13 O -0.189 6.189 14 C 0.042 3.958 15 C -0.061 4.061 16 N 0.032 4.968 17 O -0.226 6.226 18 O -0.075 6.075 19 N -0.344 5.344 20 C 0.248 3.752 21 C -0.355 4.355 22 H 0.103 0.897 23 C 0.060 3.940 24 N -0.686 5.686 25 Si 0.925 3.075 26 H -0.263 1.263 27 H -0.270 1.270 28 H -0.253 1.253 29 H 0.416 0.584 30 H 0.399 0.601 31 H 0.163 0.837 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.070 -7.479 2.538 7.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C 0.009 3.991 3 C -0.273 4.273 4 C 0.138 3.862 5 N -0.391 5.391 6 N -0.037 5.037 7 C 0.131 3.869 8 C -0.160 4.160 9 C -0.030 4.030 10 C -0.141 4.141 11 N 0.470 4.530 12 O -0.377 6.377 13 O -0.376 6.376 14 C 0.021 3.979 15 C -0.151 4.151 16 N 0.545 4.455 17 O -0.417 6.417 18 O -0.304 6.304 19 N -0.183 5.183 20 C 0.108 3.892 21 C -0.388 4.388 22 H 0.121 0.879 23 C -0.173 4.173 24 N -0.306 5.306 25 Si 0.747 3.253 26 H -0.188 1.188 27 H -0.195 1.195 28 H -0.176 1.176 29 H 0.248 0.752 30 H 0.227 0.773 31 H 0.181 0.819 32 H 0.184 0.816 33 H 0.193 0.807 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.339 -7.141 2.924 7.724 hybrid contribution -0.017 0.140 -0.215 0.257 sum 0.322 -7.002 2.710 7.515 Atomic orbital electron populations 1.81159 1.11661 1.08434 1.15001 1.24285 0.90923 0.92687 0.91205 1.16518 0.84793 0.93394 1.32583 1.18709 0.85817 0.84999 0.96675 1.41359 1.11598 1.02039 1.84120 1.42700 0.99668 1.05921 1.55430 1.16977 0.85833 0.91345 0.92774 1.20975 0.99413 0.97275 0.98289 1.20911 0.90219 0.96750 0.95134 1.19631 0.89662 1.00599 1.04225 1.50113 1.02016 1.00261 1.00634 1.96292 1.37915 1.76877 1.26576 1.96253 1.84973 1.25442 1.30975 1.20485 0.94119 0.87580 0.95763 1.20554 1.00726 0.99003 0.94816 1.42883 1.01313 1.00531 1.00764 1.94490 1.38984 1.72692 1.35509 1.94738 1.14565 1.45768 1.75356 1.75299 1.19638 0.83849 1.39549 1.19798 0.84813 0.91511 0.93079 1.20226 0.94957 0.87259 1.36397 0.87893 1.27515 0.94059 1.02336 0.93391 1.69215 1.01715 1.37594 1.22074 0.85993 0.80365 0.78939 0.79981 1.18757 1.19466 1.17629 0.75204 0.77257 0.81938 0.81576 0.80661 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 54. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.39 18.54 41.84 0.78 -8.61 16 2 C 0.32 6.03 15.64 -22.47 -0.35 5.68 16 3 C -0.25 -4.83 6.31 -103.72 -0.65 -5.48 16 4 C 0.36 5.80 7.80 -152.43 -1.19 4.61 16 5 N -0.84 -9.26 8.98 31.62 0.28 -8.98 16 6 N -0.26 -4.62 2.43 -9.36 -0.02 -4.65 16 7 C 0.24 3.69 5.67 -83.71 -0.47 3.21 16 8 C -0.14 -1.49 8.70 -39.35 -0.34 -1.83 16 9 C -0.01 -0.08 9.57 -39.61 -0.38 -0.46 16 10 C -0.05 -0.64 6.89 -79.88 -0.55 -1.19 16 11 N 0.00 0.00 4.98 33.99 0.17 0.17 16 12 O -0.19 -3.08 19.14 -31.56 -0.60 -3.68 16 13 O -0.19 -2.83 19.15 -31.57 -0.60 -3.44 16 14 C 0.04 0.59 9.08 -39.61 -0.36 0.23 16 15 C -0.06 -1.00 6.85 -79.71 -0.55 -1.55 16 16 N 0.03 0.65 4.45 34.08 0.15 0.80 16 17 O -0.23 -4.60 18.46 -29.46 -0.54 -5.15 16 18 O -0.08 -1.69 15.20 -29.46 -0.45 -2.14 16 19 N -0.34 -7.50 7.54 33.38 0.25 -7.25 16 20 C 0.25 5.46 6.96 -82.62 -0.58 4.88 16 21 C -0.36 -7.82 9.56 -35.76 -0.34 -8.16 16 22 H 0.10 2.15 7.95 -52.49 -0.42 1.74 16 23 C 0.06 1.26 5.66 -15.19 -0.09 1.17 16 24 N -0.69 -15.33 12.14 55.98 0.68 -14.65 16 25 Si 0.93 15.67 29.65 -169.99 -5.04 10.63 16 26 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 27 H -0.27 -4.54 7.11 56.52 0.40 -4.14 16 28 H -0.25 -4.26 7.11 56.52 0.40 -3.86 16 29 H 0.42 3.99 8.77 -40.82 -0.36 3.63 16 30 H 0.40 3.35 7.58 -40.82 -0.31 3.04 16 31 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.17 1.26 7.57 -52.49 -0.40 0.86 16 33 H 0.18 2.43 7.13 -52.49 -0.37 2.06 16 34 H 0.29 5.93 8.27 -40.82 -0.34 5.59 16 LS Contribution 336.01 15.07 5.06 5.06 Total: -1.00 -27.75 336.01 -7.15 -34.90 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -1.41 Total: 5.87 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -5.85 Total: 1.12 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 2.29 Total: -43.17 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -2.20 Total: -14.41 kcal Atomic # 14 Polarization: 15.67 SS G_CDS: -5.04 Total: 10.63 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.75 -7.15 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004583565.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 218.507 kcal (2) G-P(sol) polarization free energy of solvation -27.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 190.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds