Wall clock time and date at job start Tue Mar 31 2020 06:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38770 * 119.66434 * 2 1 4 4 C 1.37925 * 120.46748 * 180.02562 * 3 2 1 5 5 C 1.38773 * 119.71846 * 359.95937 * 4 3 2 6 6 N 1.38196 * 133.92705 * 180.38887 * 5 4 3 7 7 H 0.96996 * 126.41056 * 359.94535 * 6 5 4 8 8 C 1.37038 * 107.17751 * 180.02562 * 6 5 4 9 9 C 1.47399 * 125.14213 * 179.84019 * 8 6 5 10 10 C 1.43206 * 119.99960 * 359.71965 * 9 8 6 11 11 N 7.80966 * 171.19959 * 179.85044 * 2 1 3 12 12 C 1.36611 * 120.00317 * 179.71849 * 9 8 6 13 13 C 1.46467 * 120.00014 * 186.34071 * 12 9 8 14 14 C 1.40121 * 120.24040 * 32.46395 * 13 12 9 15 15 C 1.37685 * 119.86939 * 180.02562 * 14 13 12 16 16 C 1.38676 * 120.38003 * 0.02562 * 15 14 13 17 17 C 1.38072 * 120.49292 * 0.02562 * 16 15 14 18 18 C 1.38754 * 120.11451 * 359.97438 * 17 16 15 19 19 O 1.35482 * 120.18862 * 179.97438 * 18 17 16 20 20 C 1.34766 * 116.99687 * 5.62582 * 19 18 17 21 21 H 1.07992 * 120.00194 * 354.90520 * 20 19 18 22 22 C 1.38722 * 119.99534 * 174.90464 * 20 19 18 23 23 N 1.31507 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99613 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47425 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47328 * 120.00024 * 24 22 20 27 27 H 1.48505 * 109.46843 * 240.00114 * 24 22 20 28 28 N 1.31283 * 109.71613 * 359.57520 * 8 6 5 29 29 C 1.35475 * 109.64129 * 0.26272 * 28 8 6 30 30 C 1.36597 * 119.65705 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47384 * 270.02223 * 1 2 3 32 32 H 1.09000 * 109.46697 * 30.02278 * 1 2 3 33 33 H 1.08996 * 109.47459 * 150.01963 * 1 2 3 34 34 H 1.08007 * 119.76637 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.13848 * 179.97438 * 4 3 2 36 36 H 1.07992 * 119.99797 * 6.34005 * 12 9 8 37 37 H 1.07993 * 120.06244 * 0.04763 * 14 13 12 38 38 H 1.08001 * 119.80956 * 180.02562 * 15 14 13 39 39 H 1.08000 * 119.75422 * 179.72871 * 16 15 14 40 40 H 1.08000 * 119.93963 * 179.97438 * 17 16 15 41 41 H 0.96998 * 119.99402 * 179.97438 * 23 22 20 42 42 H 1.07992 * 120.05950 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1938 1.2058 0.0000 4 6 3.5729 1.2252 -0.0005 5 6 4.2777 0.0297 -0.0002 6 7 5.6220 -0.2907 0.0062 7 1 6.3630 0.3352 0.0113 8 6 5.7122 -1.6581 0.0020 9 6 6.9707 -2.4254 0.0031 10 6 8.2277 -1.7392 0.0027 11 7 9.2247 -1.1948 0.0031 12 6 6.9381 -3.7911 0.0044 13 6 8.1809 -4.5532 0.1456 14 6 9.2363 -4.0458 0.9150 15 6 10.4015 -4.7683 1.0421 16 6 10.5374 -5.9963 0.4122 17 6 9.5076 -6.5103 -0.3506 18 6 8.3245 -5.7994 -0.4925 19 8 7.3133 -6.3021 -1.2410 20 6 7.4729 -7.5491 -1.7264 21 1 8.4086 -8.0688 -1.5828 22 6 6.4352 -8.1651 -2.4107 23 7 5.2956 -7.5323 -2.5851 24 14 6.6562 -9.8938 -3.0830 25 1 8.0198 -10.3819 -2.7553 26 1 5.6471 -10.7954 -2.4717 27 1 6.4776 -9.8781 -4.5572 28 7 4.5081 -2.1813 0.0027 29 6 3.5819 -1.1927 0.0014 30 6 2.1829 -1.1870 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6445 2.1358 -0.0004 35 1 4.1020 2.1667 -0.0009 36 1 5.9960 -4.3088 -0.0986 37 1 9.1359 -3.0900 1.4077 38 1 11.2142 -4.3765 1.6357 39 1 11.4574 -6.5525 0.5151 40 1 9.6233 -7.4673 -0.8375 41 1 4.5702 -7.9630 -3.0638 42 1 1.6383 -2.1196 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004855430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:28 Heat of formation + Delta-G solvation = 113.060781 kcal Electronic energy + Delta-G solvation = -27595.362449 eV Core-core repulsion = 23700.205656 eV Total energy + Delta-G solvation = -3895.156793 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.122 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.93391 -39.48264 -37.94140 -37.16596 -36.19392 -34.00191 -33.00194 -32.58889 -31.69211 -30.19147 -29.28171 -28.73784 -26.39084 -25.61542 -24.23184 -22.65212 -21.83919 -21.69364 -21.00813 -20.36871 -18.41459 -18.25282 -17.49950 -16.74495 -15.88610 -15.54787 -15.26825 -14.99362 -14.73687 -14.48586 -14.31550 -14.03822 -14.00723 -13.88023 -13.72033 -13.62720 -13.35405 -12.91141 -12.70552 -12.40354 -12.22089 -12.04924 -11.89713 -11.88016 -11.62071 -11.44094 -11.40127 -11.09964 -10.92562 -10.85986 -10.67837 -10.57851 -9.83194 -9.77145 -9.63108 -9.08577 -8.45845 -8.14028 -7.82245 -7.24363 -6.71918 -4.27462 0.54142 1.24304 1.52766 2.13130 2.27955 2.78251 2.86010 2.91031 3.00558 3.01559 3.07621 3.70322 3.75307 3.88500 3.96247 4.34473 4.53422 4.64517 4.81277 4.84118 4.91137 5.03877 5.14376 5.31537 5.39458 5.42275 5.44590 5.53160 5.55699 5.64734 5.72021 5.84418 5.90544 5.93517 6.04860 6.25436 6.37404 6.41423 6.42596 6.53798 6.59808 6.61468 6.85255 6.90513 6.97329 7.08935 7.13499 7.34421 7.50949 7.70452 7.70793 7.99613 8.70951 9.33117 10.43022 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.003106 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.108408 B = 9012.346381 C =11686.037652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.107 4.107 4 C -0.108 4.108 5 C 0.041 3.959 6 N -0.603 5.603 7 H 0.420 0.580 8 C 0.368 3.632 9 C -0.112 4.112 10 C 0.271 3.729 11 N -0.438 5.438 12 C 0.126 3.874 13 C -0.198 4.198 14 C -0.038 4.038 15 C -0.217 4.217 16 C -0.047 4.047 17 C -0.232 4.232 18 C 0.181 3.819 19 O -0.149 6.149 20 C -0.394 4.394 21 H 0.099 0.901 22 C 0.045 3.955 23 N -0.838 5.838 24 Si 0.945 3.055 25 H -0.265 1.265 26 H -0.272 1.272 27 H -0.273 1.273 28 N -0.483 5.483 29 C 0.065 3.935 30 C -0.066 4.066 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.120 0.880 36 H 0.162 0.838 37 H 0.116 0.884 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.276 0.724 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 11.064 5.198 12.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.127 4.127 4 C -0.129 4.129 5 C -0.069 4.069 6 N -0.214 5.214 7 H 0.259 0.741 8 C 0.105 3.895 9 C -0.119 4.119 10 C -0.042 4.042 11 N -0.115 5.115 12 C 0.100 3.900 13 C -0.200 4.200 14 C -0.056 4.056 15 C -0.236 4.236 16 C -0.066 4.066 17 C -0.251 4.251 18 C 0.123 3.877 19 O -0.048 6.048 20 C -0.470 4.470 21 H 0.117 0.883 22 C -0.163 4.163 23 N -0.469 5.469 24 Si 0.769 3.231 25 H -0.189 1.189 26 H -0.198 1.198 27 H -0.199 1.199 28 N -0.203 5.203 29 C -0.054 4.054 30 C -0.085 4.085 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.138 0.862 36 H 0.180 0.820 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.087 0.913 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.123 11.096 4.977 12.556 hybrid contribution 0.520 0.106 -0.387 0.657 sum -2.603 11.202 4.590 12.383 Atomic orbital electron populations 1.20726 0.90885 1.02706 1.02167 1.19327 0.96102 0.92445 1.02284 1.20697 0.92667 0.97588 1.01739 1.19886 0.93764 0.94463 1.04805 1.18876 0.83555 0.97063 1.07385 1.43136 1.06604 1.07765 1.63924 0.74146 1.20886 0.92748 0.78961 0.96953 1.14985 0.82074 0.90849 1.23996 1.25293 0.92871 0.93068 0.92978 1.81231 1.09988 1.08858 1.11452 1.22720 0.98870 0.90400 0.77980 1.17934 0.95855 0.96503 1.09738 1.21093 0.91717 0.97391 0.95438 1.20534 0.98448 0.97363 1.07287 1.21001 0.97253 0.94607 0.93718 1.21167 0.94377 1.03049 1.06458 1.19368 0.88457 0.90980 0.88871 1.83855 1.36263 1.30888 1.53823 1.21543 1.01691 0.88511 1.35216 0.88340 1.25412 0.94248 1.00244 0.96404 1.70019 1.03172 1.37511 1.36227 0.85583 0.79092 0.79633 0.78828 1.18865 1.19763 1.19853 1.70754 0.96378 1.29936 1.23199 1.19036 0.94045 0.88016 1.04353 1.19923 0.90093 0.98319 1.00180 0.91390 0.91734 0.91456 0.85591 0.86205 0.82027 0.86664 0.87085 0.86868 0.84794 0.91344 0.85155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.99 36.01 0.36 -0.52 16 2 C -0.10 -1.11 5.84 -105.02 -0.61 -1.72 16 3 C -0.11 -1.11 9.67 -39.50 -0.38 -1.49 16 4 C -0.11 -1.24 10.07 -39.50 -0.40 -1.63 16 5 C 0.04 0.58 7.30 -83.89 -0.61 -0.03 16 6 N -0.60 -8.45 6.13 -8.48 -0.05 -8.50 16 7 H 0.42 4.82 8.70 -40.82 -0.36 4.47 16 8 C 0.37 6.10 7.72 -154.46 -1.19 4.90 16 9 C -0.11 -1.88 5.81 -104.83 -0.61 -2.49 16 10 C 0.27 4.48 11.30 -22.47 -0.25 4.22 16 11 N -0.44 -7.53 18.03 41.84 0.75 -6.77 16 12 C 0.13 2.33 9.07 -36.86 -0.33 1.99 16 13 C -0.20 -3.87 5.55 -104.93 -0.58 -4.45 16 14 C -0.04 -0.67 8.27 -39.08 -0.32 -0.99 16 15 C -0.22 -3.62 10.02 -39.62 -0.40 -4.02 16 16 C -0.05 -0.79 10.03 -39.48 -0.40 -1.19 16 17 C -0.23 -4.53 9.16 -39.45 -0.36 -4.89 16 18 C 0.18 3.95 6.67 -38.45 -0.26 3.70 16 19 O -0.15 -3.77 9.18 1.05 0.01 -3.76 16 20 C -0.39 -9.89 9.49 30.91 0.29 -9.60 16 21 H 0.10 2.26 5.21 -52.49 -0.27 1.99 16 22 C 0.04 1.12 5.49 -17.51 -0.10 1.02 16 23 N -0.84 -22.46 13.67 55.48 0.76 -21.70 16 24 Si 0.94 18.73 29.55 -169.99 -5.02 13.71 16 25 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 28 N -0.48 -8.78 10.78 -8.77 -0.09 -8.87 16 29 C 0.07 1.06 7.22 -84.72 -0.61 0.45 16 30 C -0.07 -0.91 9.67 -39.55 -0.38 -1.29 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.16 3.19 7.69 -52.49 -0.40 2.79 16 37 H 0.12 1.91 5.67 -52.49 -0.30 1.62 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.13 2.56 5.64 -52.49 -0.30 2.26 16 41 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.13 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -29.01 372.79 -9.31 -38.32 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.14 Total: 9.98 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -7.15 Total: -18.02 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: 1.37 Total: -45.85 kcal Atomic # 8 Polarization: -3.77 SS G_CDS: 0.01 Total: -3.76 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.02 Total: 13.71 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.01 -9.31 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004855430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.383 kcal (2) G-P(sol) polarization free energy of solvation -29.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds