Wall clock time and date at job start Tue Mar 31 2020 06:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38770 * 119.66434 * 2 1 4 4 C 1.37925 * 120.46748 * 180.02562 * 3 2 1 5 5 C 1.38773 * 119.71846 * 359.95937 * 4 3 2 6 6 N 1.38196 * 133.92705 * 180.38887 * 5 4 3 7 7 H 0.96996 * 126.41056 * 359.94535 * 6 5 4 8 8 C 1.37038 * 107.17751 * 180.02562 * 6 5 4 9 9 C 1.47399 * 125.14213 * 179.84019 * 8 6 5 10 10 C 1.43206 * 119.99960 * 359.71965 * 9 8 6 11 11 N 7.80966 * 171.19959 * 179.85044 * 2 1 3 12 12 C 1.36611 * 120.00317 * 179.71849 * 9 8 6 13 13 C 1.46467 * 120.00014 * 186.34071 * 12 9 8 14 14 C 1.40121 * 120.24040 * 32.46395 * 13 12 9 15 15 C 1.37685 * 119.86939 * 180.02562 * 14 13 12 16 16 C 1.38676 * 120.38003 * 0.02562 * 15 14 13 17 17 C 1.38072 * 120.49292 * 0.02562 * 16 15 14 18 18 C 1.38754 * 120.11451 * 359.97438 * 17 16 15 19 19 O 1.35482 * 120.18862 * 179.97438 * 18 17 16 20 20 C 1.34766 * 116.99687 * 5.62582 * 19 18 17 21 21 H 1.07992 * 120.00194 * 354.90520 * 20 19 18 22 22 C 1.38722 * 119.99534 * 174.90464 * 20 19 18 23 23 N 1.31507 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99613 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47425 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47328 * 120.00024 * 24 22 20 27 27 H 1.48505 * 109.46843 * 240.00114 * 24 22 20 28 28 N 1.31283 * 109.71613 * 359.57520 * 8 6 5 29 29 C 1.35475 * 109.64129 * 0.26272 * 28 8 6 30 30 C 1.36597 * 119.65705 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47384 * 270.02223 * 1 2 3 32 32 H 1.09000 * 109.46697 * 30.02278 * 1 2 3 33 33 H 1.08996 * 109.47459 * 150.01963 * 1 2 3 34 34 H 1.08007 * 119.76637 * 359.97438 * 3 2 1 35 35 H 1.07998 * 120.13848 * 179.97438 * 4 3 2 36 36 H 1.07992 * 119.99797 * 6.34005 * 12 9 8 37 37 H 1.07993 * 120.06244 * 0.04763 * 14 13 12 38 38 H 1.08001 * 119.80956 * 180.02562 * 15 14 13 39 39 H 1.08000 * 119.75422 * 179.72871 * 16 15 14 40 40 H 1.08000 * 119.93963 * 179.97438 * 17 16 15 41 41 H 0.96998 * 119.99402 * 179.97438 * 23 22 20 42 42 H 1.07992 * 120.05950 * 0.02562 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1938 1.2058 0.0000 4 6 3.5729 1.2252 -0.0005 5 6 4.2777 0.0297 -0.0002 6 7 5.6220 -0.2907 0.0062 7 1 6.3630 0.3352 0.0113 8 6 5.7122 -1.6581 0.0020 9 6 6.9707 -2.4254 0.0031 10 6 8.2277 -1.7392 0.0027 11 7 9.2247 -1.1948 0.0031 12 6 6.9381 -3.7911 0.0044 13 6 8.1809 -4.5532 0.1456 14 6 9.2363 -4.0458 0.9150 15 6 10.4015 -4.7683 1.0421 16 6 10.5374 -5.9963 0.4122 17 6 9.5076 -6.5103 -0.3506 18 6 8.3245 -5.7994 -0.4925 19 8 7.3133 -6.3021 -1.2410 20 6 7.4729 -7.5491 -1.7264 21 1 8.4086 -8.0688 -1.5828 22 6 6.4352 -8.1651 -2.4107 23 7 5.2956 -7.5323 -2.5851 24 14 6.6562 -9.8938 -3.0830 25 1 8.0198 -10.3819 -2.7553 26 1 5.6471 -10.7954 -2.4717 27 1 6.4776 -9.8781 -4.5572 28 7 4.5081 -2.1813 0.0027 29 6 3.5819 -1.1927 0.0014 30 6 2.1829 -1.1870 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8901 -0.5135 34 1 1.6445 2.1358 -0.0004 35 1 4.1020 2.1667 -0.0009 36 1 5.9960 -4.3088 -0.0986 37 1 9.1359 -3.0900 1.4077 38 1 11.2142 -4.3765 1.6357 39 1 11.4574 -6.5525 0.5151 40 1 9.6233 -7.4673 -0.8375 41 1 4.5702 -7.9630 -3.0638 42 1 1.6383 -2.1196 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004855430.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:27 Heat of formation + Delta-G solvation = 98.540029 kcal Electronic energy + Delta-G solvation = -27595.992116 eV Core-core repulsion = 23700.205656 eV Total energy + Delta-G solvation = -3895.786460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.122 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.08942 -41.05048 -39.15109 -38.51029 -37.65913 -35.39998 -34.36520 -34.16914 -32.69626 -31.46600 -30.76515 -29.94029 -27.54577 -27.22382 -25.57317 -23.85728 -23.17019 -22.90636 -22.43507 -21.58703 -19.97324 -19.64177 -18.80829 -18.08208 -17.12524 -16.92347 -16.54846 -16.41677 -16.13512 -15.91474 -15.68346 -15.52218 -15.37052 -14.97589 -14.92409 -14.81025 -14.41033 -14.29250 -14.16166 -13.75597 -13.57185 -13.50587 -13.15793 -13.02305 -12.71923 -12.64912 -12.48416 -12.38267 -12.34511 -12.27418 -12.08264 -11.84856 -11.33043 -11.08655 -11.01224 -10.84698 -9.78916 -9.24669 -9.14820 -8.67065 -8.50400 -6.16931 -0.81975 0.08996 0.51689 0.60575 0.82754 1.38298 1.39057 1.46332 1.56002 1.62067 1.73544 2.14850 2.35436 2.52990 2.78496 2.86911 3.11008 3.28280 3.30793 3.46633 3.83465 3.96568 4.05010 4.18154 4.18763 4.27317 4.30955 4.41289 4.47419 4.49760 4.65501 4.83344 4.85247 4.90546 4.92593 4.95773 5.06552 5.08707 5.14793 5.30953 5.39829 5.50727 5.52817 5.55959 5.62824 5.68548 5.94462 5.95810 6.04940 6.23889 6.29795 6.78981 6.92562 7.64700 8.69913 Molecular weight = 345.12amu Principal moments of inertia in cm(-1) A = 0.009441 B = 0.003106 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.108408 B = 9012.346381 C =11686.037652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.091 4.091 3 C -0.094 4.094 4 C -0.108 4.108 5 C 0.035 3.965 6 N -0.589 5.589 7 H 0.432 0.568 8 C 0.343 3.657 9 C -0.075 4.075 10 C 0.279 3.721 11 N -0.433 5.433 12 C 0.103 3.897 13 C -0.196 4.196 14 C -0.047 4.047 15 C -0.199 4.199 16 C -0.039 4.039 17 C -0.245 4.245 18 C 0.154 3.846 19 O -0.201 6.201 20 C -0.416 4.416 21 H 0.110 0.890 22 C -0.013 4.013 23 N -0.903 5.903 24 Si 1.016 2.984 25 H -0.248 1.248 26 H -0.269 1.269 27 H -0.271 1.271 28 N -0.516 5.516 29 C 0.023 3.977 30 C -0.092 4.092 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.065 0.935 34 H 0.168 0.832 35 H 0.153 0.847 36 H 0.139 0.861 37 H 0.129 0.871 38 H 0.149 0.851 39 H 0.155 0.845 40 H 0.133 0.867 41 H 0.275 0.725 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 13.969 6.418 15.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.129 4.129 5 C -0.075 4.075 6 N -0.201 5.201 7 H 0.273 0.727 8 C 0.079 3.921 9 C -0.082 4.082 10 C -0.034 4.034 11 N -0.110 5.110 12 C 0.077 3.923 13 C -0.198 4.198 14 C -0.066 4.066 15 C -0.218 4.218 16 C -0.057 4.057 17 C -0.264 4.264 18 C 0.099 3.901 19 O -0.104 6.104 20 C -0.492 4.492 21 H 0.127 0.873 22 C -0.213 4.213 23 N -0.538 5.538 24 Si 0.835 3.165 25 H -0.171 1.171 26 H -0.194 1.194 27 H -0.196 1.196 28 N -0.237 5.237 29 C -0.096 4.096 30 C -0.111 4.111 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.185 0.815 35 H 0.171 0.829 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.166 0.834 39 H 0.173 0.827 40 H 0.151 0.849 41 H 0.084 0.916 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.846 14.048 6.237 15.481 hybrid contribution 0.160 -0.317 -0.525 0.634 sum -1.686 13.731 5.712 14.967 Atomic orbital electron populations 1.20812 0.88444 1.03829 1.03335 1.19768 0.97872 0.91807 0.99887 1.21245 0.92471 0.98718 0.98868 1.20354 0.94354 0.94513 1.03649 1.19224 0.83270 0.97513 1.07447 1.42985 1.07197 1.06835 1.63099 0.72716 1.20669 0.92133 0.80160 0.99117 1.14908 0.82684 0.90148 1.20451 1.25045 0.92518 0.92840 0.92995 1.81239 1.09780 1.08986 1.10952 1.22466 0.98047 0.91120 0.80700 1.18201 0.96536 0.95893 1.09132 1.21312 0.91735 0.98265 0.95257 1.21055 0.98543 0.96539 1.05617 1.21426 0.97704 0.94733 0.91833 1.21348 0.94517 1.03163 1.07371 1.19926 0.88885 0.91981 0.89273 1.83859 1.38160 1.31576 1.56813 1.21960 1.02356 0.89110 1.35756 0.87264 1.26567 0.93741 1.04345 0.96641 1.70166 1.04526 1.39754 1.39369 0.84560 0.79666 0.74369 0.77878 1.17121 1.19438 1.19637 1.70645 0.97646 1.31992 1.23398 1.19454 0.94995 0.88581 1.06583 1.20142 0.89501 0.99571 1.01907 0.90056 0.89381 0.91642 0.81457 0.82907 0.84353 0.85340 0.83362 0.82749 0.84943 0.91553 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 9.99 71.24 0.71 -0.74 16 2 C -0.09 -1.86 5.84 -20.12 -0.12 -1.98 16 3 C -0.09 -1.59 9.67 22.32 0.22 -1.37 16 4 C -0.11 -2.13 10.07 22.32 0.22 -1.91 16 5 C 0.04 0.97 7.30 38.86 0.28 1.26 16 6 N -0.59 -16.27 6.13 -180.74 -1.11 -17.37 16 7 H 0.43 9.34 8.70 -92.71 -0.81 8.54 16 8 C 0.34 11.83 7.72 136.25 1.05 12.88 16 9 C -0.08 -2.62 5.81 -20.00 -0.12 -2.73 16 10 C 0.28 9.02 11.30 88.33 1.00 10.01 16 11 N -0.43 -14.05 18.03 19.01 0.34 -13.70 16 12 C 0.10 4.08 9.07 24.03 0.22 4.30 16 13 C -0.20 -7.92 5.55 -20.07 -0.11 -8.03 16 14 C -0.05 -1.61 8.27 22.60 0.19 -1.42 16 15 C -0.20 -5.98 10.02 22.24 0.22 -5.75 16 16 C -0.04 -1.20 10.03 22.34 0.22 -0.98 16 17 C -0.24 -9.64 9.16 22.35 0.20 -9.44 16 18 C 0.15 7.05 6.67 23.01 0.15 7.20 16 19 O -0.20 -11.06 9.18 -19.15 -0.18 -11.24 16 20 C -0.42 -22.36 9.49 67.94 0.64 -21.72 16 21 H 0.11 5.30 5.21 -2.91 -0.02 5.28 16 22 C -0.01 -0.67 5.49 84.86 0.47 -0.21 16 23 N -0.90 -52.61 13.67 21.62 0.30 -52.32 16 24 Si 1.02 40.33 29.55 68.60 2.03 42.36 16 25 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 26 H -0.27 -10.37 7.11 99.48 0.71 -9.67 16 27 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 28 N -0.52 -20.09 10.78 -181.67 -1.96 -22.05 16 29 C 0.02 0.77 7.22 39.57 0.29 1.05 16 30 C -0.09 -2.59 9.67 22.29 0.22 -2.38 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 33 H 0.06 0.93 8.07 -2.39 -0.02 0.91 16 34 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.14 6.19 7.69 -2.91 -0.02 6.17 16 37 H 0.13 4.01 5.67 -2.91 -0.02 3.99 16 38 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 39 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 40 H 0.13 5.17 5.64 -2.91 -0.02 5.15 16 41 H 0.28 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.12 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -70.09 372.79 5.68 -64.41 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.30 Total: 31.86 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: 5.96 Total: -21.95 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -2.43 Total: -105.44 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.18 Total: -11.24 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -70.09 5.68 -64.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004855430.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.947 kcal (2) G-P(sol) polarization free energy of solvation -70.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds