Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34782 * 116.99850 * 2 1 4 4 O 1.21551 * 120.00043 * 359.97438 * 3 2 1 5 5 C 1.47113 * 120.00250 * 179.97438 * 3 2 1 6 6 C 1.38065 * 126.82040 * 5.64585 * 5 3 2 7 7 N 1.34105 * 107.88321 * 179.97438 * 6 5 3 8 8 C 1.46497 * 125.15231 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.46946 * 125.00319 * 8 7 6 10 10 H 1.07998 * 119.99929 * 0.02562 * 9 8 7 11 11 C 1.37876 * 119.99857 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99996 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99922 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.46912 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47161 * 120.00112 * 13 11 9 16 16 H 1.48500 * 109.46575 * 239.99598 * 13 11 9 17 17 N 1.39765 * 109.69843 * 0.02562 * 7 6 5 18 18 C 1.31365 * 109.10526 * 0.02562 * 17 7 6 19 19 C 1.48248 * 126.52473 * 179.97438 * 18 17 7 20 20 C 1.39410 * 120.08196 * 223.82999 * 19 18 17 21 21 C 1.37924 * 119.98785 * 180.02562 * 20 19 18 22 22 C 1.38852 * 120.23685 * 359.97438 * 21 20 19 23 23 C 1.39108 * 120.01874 * 359.87930 * 22 21 20 24 24 C 1.38476 * 119.94407 * 359.91838 * 23 22 21 25 25 O 1.36137 * 120.77193 * 180.36842 * 23 22 21 26 26 C 1.43170 * 116.70023 * 342.54310 * 25 23 22 27 27 C 1.53467 * 108.23070 * 46.30755 * 26 25 23 28 28 O 1.36115 * 119.25861 * 179.65004 * 22 21 20 29 29 H 1.08999 * 109.47118 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47709 * 299.99894 * 1 2 3 31 31 H 1.08999 * 109.47122 * 60.00463 * 1 2 3 32 32 H 1.08002 * 126.06255 * 359.73811 * 6 5 3 33 33 H 1.08997 * 109.47432 * 245.00210 * 8 7 6 34 34 H 1.09002 * 109.47018 * 5.00315 * 8 7 6 35 35 H 0.97004 * 120.00065 * 180.02562 * 12 11 9 36 36 H 1.08000 * 120.00603 * 0.08153 * 20 19 18 37 37 H 1.07992 * 119.87889 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.01255 * 180.16336 * 24 23 22 39 39 H 1.09001 * 109.70802 * 165.99428 * 26 25 23 40 40 H 1.09005 * 109.70698 * 286.62136 * 26 25 23 41 41 H 1.09002 * 109.70506 * 59.93392 * 27 26 25 42 42 H 1.08998 * 109.70505 * 180.55653 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4018 2.2203 -0.0005 5 6 3.5329 1.2780 0.0006 6 6 4.4169 0.2230 -0.1076 7 7 5.6609 0.7220 -0.0650 8 6 6.8907 -0.0697 -0.1485 9 6 7.7495 0.4532 -1.2710 10 1 7.4131 1.2918 -1.8627 11 6 8.9646 -0.1388 -1.5426 12 7 9.3745 -1.1597 -0.8218 13 14 10.0295 0.5098 -2.9336 14 1 9.3474 1.6562 -3.5859 15 1 11.3372 0.9558 -2.3893 16 1 10.2503 -0.5674 -3.9316 17 7 5.6065 2.1119 0.0724 18 6 4.3495 2.4906 0.1170 19 6 3.8510 3.8797 0.2574 20 6 2.8011 4.1605 1.1306 21 6 2.3385 5.4534 1.2594 22 6 2.9151 6.4790 0.5221 23 6 3.9650 6.2051 -0.3485 24 6 4.4355 4.9092 -0.4778 25 8 4.5466 7.2001 -1.0731 26 6 3.8090 8.4208 -1.1975 27 6 3.2798 8.8056 0.1907 28 8 2.4382 7.7465 0.6593 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.1534 -0.8198 -0.2051 33 1 7.4363 0.0061 0.7920 34 1 6.6388 -1.1129 -0.3393 35 1 10.2296 -1.5760 -1.0126 36 1 2.3507 3.3658 1.7069 37 1 1.5254 5.6690 1.9366 38 1 5.2523 4.6957 -1.1514 39 1 4.4622 9.2083 -1.5733 40 1 2.9735 8.2772 -1.8828 41 1 4.1151 8.9424 0.8775 42 1 2.7047 9.7289 0.1218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005000361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -55.721411 kcal Electronic energy + Delta-G solvation = -29330.816074 eV Core-core repulsion = 25050.624233 eV Total energy + Delta-G solvation = -4280.191841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.20627 -40.66605 -39.50507 -37.63288 -37.22725 -35.97488 -33.86753 -32.31090 -31.00949 -30.70457 -30.03802 -28.61838 -27.69348 -26.73998 -24.89299 -23.64097 -23.02836 -22.28017 -20.99348 -20.22803 -19.44216 -18.48492 -17.40659 -17.23608 -17.04125 -16.72935 -16.37968 -16.04134 -15.50914 -15.29714 -15.08275 -14.71470 -14.45761 -14.40039 -13.98159 -13.88634 -13.73936 -13.49063 -13.16497 -12.98139 -12.71916 -12.44790 -12.04600 -12.00059 -11.82431 -11.64486 -11.20528 -11.14112 -11.04601 -10.96065 -10.57895 -10.49171 -10.40577 -10.37199 -9.99249 -9.79922 -9.08687 -8.73416 -8.44780 -8.17700 -7.68882 -6.35760 -4.41601 1.17222 1.51280 1.85624 2.65817 2.88358 2.99326 3.16004 3.17817 3.25973 3.28974 3.35964 3.51994 3.96482 4.12941 4.23730 4.64716 4.65950 4.71409 4.75574 4.97341 5.03866 5.09545 5.18806 5.25623 5.28965 5.35766 5.37750 5.46955 5.56922 5.60433 5.76164 5.85653 6.01833 6.16866 6.28210 6.52616 6.62789 6.67166 6.75160 6.83071 6.91616 7.00890 7.45591 7.46882 7.68063 7.70233 8.14852 8.25544 8.65739 9.25324 10.73359 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.008185 B = 0.003701 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.908623 B = 7562.978037 C =10468.957228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.362 6.362 3 C 0.545 3.455 4 O -0.518 6.518 5 C -0.304 4.304 6 C 0.129 3.871 7 N -0.310 5.310 8 C 0.248 3.752 9 C -0.534 4.534 10 H 0.072 0.928 11 C 0.065 3.935 12 N -0.892 5.892 13 Si 0.909 3.091 14 H -0.270 1.270 15 H -0.280 1.280 16 H -0.281 1.281 17 N -0.255 5.255 18 C 0.146 3.854 19 C 0.001 3.999 20 C -0.052 4.052 21 C -0.119 4.119 22 C 0.053 3.947 23 C 0.041 3.959 24 C -0.081 4.081 25 O -0.306 6.306 26 C 0.021 3.979 27 C 0.021 3.979 28 O -0.309 6.309 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.187 0.813 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.268 0.732 36 H 0.134 0.866 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.496 10.930 2.765 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.279 6.279 3 C 0.392 3.608 4 O -0.407 6.407 5 C -0.317 4.317 6 C -0.026 4.026 7 N -0.085 5.085 8 C 0.132 3.868 9 C -0.572 4.572 10 H 0.090 0.910 11 C -0.138 4.138 12 N -0.530 5.530 13 Si 0.735 3.265 14 H -0.194 1.194 15 H -0.206 1.206 16 H -0.207 1.207 17 N -0.075 5.075 18 C -0.022 4.022 19 C -0.001 4.001 20 C -0.072 4.072 21 C -0.137 4.137 22 C 0.008 3.992 23 C -0.004 4.004 24 C -0.101 4.101 25 O -0.221 6.221 26 C -0.055 4.055 27 C -0.055 4.055 28 O -0.224 6.224 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.204 0.796 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.131 11.402 2.791 18.371 hybrid contribution -0.291 0.050 -0.902 0.949 sum -14.422 11.453 1.889 18.513 Atomic orbital electron populations 1.23145 0.76911 1.03072 1.02257 1.86571 1.22772 1.33411 1.85163 1.20009 0.87548 0.81008 0.72211 1.90820 1.66505 1.35507 1.47918 1.20049 0.89474 0.92724 1.29498 1.23140 0.84919 0.99543 0.94998 1.49335 1.07381 1.04262 1.47515 1.20015 0.77461 0.89411 0.99939 1.21229 1.03251 1.17274 1.15472 0.91014 1.24926 0.97286 0.94624 0.96983 1.69916 1.21617 1.22038 1.39448 0.86251 0.79979 0.79001 0.81221 1.19412 1.20561 1.20672 1.77546 1.17178 0.91444 1.21311 1.21518 0.89545 0.91594 0.99547 1.17290 0.96496 0.88185 0.98145 1.20816 0.94138 0.95362 0.96888 1.20218 1.02160 0.90636 1.00723 1.18949 0.97313 0.85046 0.97867 1.18607 0.97162 0.89140 0.95455 1.20445 1.00788 0.88174 1.00656 1.86341 1.44195 1.22309 1.69261 1.23583 0.98075 0.86643 0.97202 1.23592 0.96081 0.90237 0.95592 1.86279 1.43865 1.12411 1.79829 0.88582 0.92196 0.92198 0.79649 0.92867 0.92012 0.92190 0.84857 0.84785 0.84265 0.86308 0.90664 0.90554 0.86369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.57 101.05 1.07 1.48 16 2 O -0.36 -5.13 10.41 -40.71 -0.42 -5.55 16 3 C 0.55 9.10 7.80 34.33 0.27 9.36 16 4 O -0.52 -9.17 13.33 -19.31 -0.26 -9.43 16 5 C -0.30 -5.53 6.28 -102.96 -0.65 -6.17 16 6 C 0.13 2.30 11.23 -16.62 -0.19 2.11 16 7 N -0.31 -6.60 3.62 -62.02 -0.22 -6.82 16 8 C 0.25 5.84 6.21 -5.19 -0.03 5.80 16 9 C -0.53 -14.11 9.21 -34.44 -0.32 -14.43 16 10 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 11 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 12 N -0.89 -24.23 13.29 55.43 0.74 -23.50 16 13 Si 0.91 20.77 29.54 -169.99 -5.02 15.75 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 N -0.25 -5.62 12.30 34.58 0.43 -5.19 16 18 C 0.15 2.87 6.86 -80.56 -0.55 2.32 16 19 C 0.00 0.02 5.53 -104.93 -0.58 -0.56 16 20 C -0.05 -0.84 7.73 -39.26 -0.30 -1.14 16 21 C -0.12 -1.72 9.94 -39.47 -0.39 -2.12 16 22 C 0.05 0.80 6.50 -39.03 -0.25 0.54 16 23 C 0.04 0.65 6.49 -39.17 -0.25 0.40 16 24 C -0.08 -1.42 9.69 -39.08 -0.38 -1.80 16 25 O -0.31 -4.43 10.42 -32.96 -0.34 -4.77 16 26 C 0.02 0.20 7.26 37.40 0.27 0.47 16 27 C 0.02 0.19 7.26 37.40 0.27 0.46 16 28 O -0.31 -4.00 10.41 -32.89 -0.34 -4.34 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.19 2.61 8.06 -52.49 -0.42 2.19 16 33 H 0.05 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.40 8.05 -51.93 -0.42 0.98 16 35 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.13 2.06 6.94 -52.49 -0.36 1.70 16 37 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.14 2.53 8.06 -52.49 -0.42 2.10 16 39 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -31.74 369.05 -6.98 -38.72 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.98 Total: 1.21 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.12 Total: -1.65 kcal Atomic # 7 Polarization: -36.45 SS G_CDS: 0.94 Total: -35.51 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -1.37 Total: -24.09 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.74 -6.98 -38.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005000361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.999 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds