Wall clock time and date at job start Tue Mar 31 2020 05:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86796 * 119.99519 * 2 1 4 4 H 1.48506 * 109.47016 * 239.99532 * 3 2 1 5 5 H 1.48499 * 109.47795 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46962 * 120.00265 * 3 2 1 7 7 C 1.37870 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00098 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00339 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47464 * 180.02562 * 9 7 2 11 11 C 1.46502 * 119.99815 * 270.00190 * 10 9 7 12 12 C 1.50703 * 109.47157 * 269.99968 * 11 10 9 13 13 C 1.38237 * 119.99746 * 269.72673 * 12 11 10 14 14 C 1.38236 * 119.99947 * 179.76281 * 13 12 11 15 15 C 1.38234 * 119.99645 * 0.50983 * 14 13 12 16 16 C 1.38238 * 120.00261 * 359.74727 * 15 14 13 17 17 C 1.38234 * 119.99985 * 89.99939 * 12 11 10 18 18 C 1.34770 * 120.00214 * 90.00017 * 10 9 7 19 19 O 1.21587 * 120.00369 * 180.02562 * 18 10 9 20 20 N 1.34782 * 120.00258 * 0.02562 * 18 10 9 21 21 C 1.39937 * 120.00127 * 185.30029 * 20 18 10 22 22 C 1.38903 * 120.06390 * 213.30411 * 21 20 18 23 23 C 1.38092 * 119.95840 * 180.02562 * 22 21 20 24 24 C 1.38283 * 120.08049 * 0.02562 * 23 22 21 25 25 C 1.38374 * 120.13025 * 359.97438 * 24 23 22 26 26 Cl 1.73602 * 119.98318 * 180.02562 * 25 24 23 27 27 C 1.38254 * 120.04091 * 0.02562 * 25 24 23 28 28 H 0.96999 * 119.99868 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46862 * 60.00021 * 9 7 2 30 30 H 1.09006 * 109.47345 * 300.00646 * 9 7 2 31 31 H 1.08997 * 109.47110 * 29.99793 * 11 10 9 32 32 H 1.09001 * 109.46808 * 149.99987 * 11 10 9 33 33 H 1.08006 * 120.00023 * 359.97438 * 13 12 11 34 34 H 1.07996 * 120.00066 * 180.22398 * 14 13 12 35 35 H 1.08004 * 120.00170 * 179.71674 * 15 14 13 36 36 H 1.07996 * 119.99886 * 179.97438 * 16 15 14 37 37 H 1.08001 * 119.99920 * 0.02562 * 17 12 11 38 38 H 0.97000 * 119.99757 * 5.30036 * 20 18 10 39 39 H 1.08003 * 120.01892 * 0.02562 * 22 21 20 40 40 H 1.07998 * 119.96010 * 180.02562 * 23 22 21 41 41 H 1.08007 * 119.93437 * 179.97438 * 24 23 22 42 42 H 1.08010 * 120.04018 * 180.27310 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.6791 -4.1693 -1.2693 12 6 1.7624 -5.2835 -1.7044 13 6 2.0189 -6.5834 -1.3100 14 6 1.1753 -7.6048 -1.7051 15 6 0.0811 -7.3277 -2.5031 16 6 -0.1724 -6.0286 -2.9019 17 6 0.6682 -5.0065 -2.5025 18 6 2.6410 -4.1249 1.1666 19 8 3.4315 -5.0487 1.1666 20 7 2.2028 -3.6130 2.3339 21 6 2.7396 -4.0687 3.5432 22 6 1.9417 -4.1333 4.6783 23 6 2.4739 -4.5828 5.8706 24 6 3.8003 -4.9682 5.9360 25 6 4.5983 -4.9054 4.8074 26 17 6.2629 -5.3908 4.8936 27 6 4.0709 -4.4561 3.6109 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.6868 -3.3877 -2.0289 32 1 3.6886 -4.5594 -1.1389 33 1 2.8765 -6.8005 -0.6905 34 1 1.3736 -8.6197 -1.3940 35 1 -0.5755 -8.1263 -2.8156 36 1 -1.0270 -5.8123 -3.5257 37 1 0.4706 -3.9916 -2.8145 38 1 1.5152 -2.9288 2.3357 39 1 0.9057 -3.8321 4.6284 40 1 1.8534 -4.6334 6.7531 41 1 4.2142 -5.3191 6.8699 42 1 4.6927 -4.4112 2.7289 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005682813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:32 Heat of formation + Delta-G solvation = 19.455281 kcal Electronic energy + Delta-G solvation = -27042.739792 eV Core-core repulsion = 23206.517022 eV Total energy + Delta-G solvation = -3836.222771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.103 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.35643 -39.08929 -38.28840 -36.37578 -35.26733 -34.33082 -32.82988 -31.32730 -30.60706 -30.57278 -29.14007 -27.53575 -25.61139 -23.31377 -22.76054 -22.27162 -22.14683 -21.05230 -19.35773 -17.96462 -17.08848 -16.80993 -16.27559 -16.14171 -15.33388 -15.11548 -14.91596 -14.71483 -14.59442 -14.36615 -14.07966 -13.52269 -13.35681 -13.15727 -13.08562 -12.79399 -12.42562 -12.25395 -11.90809 -11.71264 -11.65293 -11.43681 -11.34277 -11.09539 -10.96024 -10.87050 -10.80972 -10.61083 -10.28925 -9.98946 -9.90255 -9.53960 -8.68879 -8.63238 -8.62406 -8.49583 -8.06647 -7.66207 -6.29177 -4.38122 1.29924 1.46306 1.57647 1.69562 2.24574 3.18612 3.20055 3.23974 3.28373 3.56120 3.98865 4.08246 4.24077 4.61090 4.95320 5.03948 5.14319 5.15054 5.19205 5.26049 5.27613 5.44119 5.52826 5.61402 5.66448 5.80609 5.88805 5.97328 6.17023 6.30481 6.32547 6.35954 6.43475 6.46922 6.55309 6.65350 6.73291 6.75969 6.95910 6.98766 7.18264 7.25151 7.29515 7.61443 7.65688 7.91148 8.40885 8.71852 9.09780 9.31748 10.76820 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.006748 B = 0.004518 C = 0.003067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4148.484875 B = 6196.407585 C = 9126.062785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.240 3.760 10 N -0.601 5.601 11 C 0.174 3.826 12 C -0.097 4.097 13 C -0.096 4.096 14 C -0.130 4.130 15 C -0.125 4.125 16 C -0.128 4.128 17 C -0.101 4.101 18 C 0.709 3.291 19 O -0.599 6.599 20 N -0.681 5.681 21 C 0.202 3.798 22 C -0.153 4.153 23 C -0.087 4.087 24 C -0.144 4.144 25 C -0.013 4.013 26 Cl -0.078 7.078 27 C -0.118 4.118 28 H 0.267 0.733 29 H 0.042 0.958 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.125 0.875 38 H 0.420 0.580 39 H 0.130 0.870 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.724 -10.163 4.261 11.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.725 3.275 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.120 3.880 10 N -0.334 5.334 11 C 0.050 3.950 12 C -0.099 4.099 13 C -0.114 4.114 14 C -0.148 4.148 15 C -0.143 4.143 16 C -0.146 4.146 17 C -0.119 4.119 18 C 0.412 3.588 19 O -0.479 6.479 20 N -0.329 5.329 21 C 0.104 3.896 22 C -0.174 4.174 23 C -0.106 4.106 24 C -0.164 4.164 25 C -0.040 4.040 26 Cl -0.049 7.049 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.107 0.893 32 H 0.101 0.899 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.260 0.740 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.234 -10.654 4.125 11.641 hybrid contribution -0.006 1.362 -0.039 1.363 sum 2.228 -9.292 4.086 10.393 Atomic orbital electron populations 1.69911 1.05987 1.27618 1.49246 1.24938 0.94855 0.99340 0.94496 0.86553 0.79566 0.82432 0.78946 1.20041 1.21115 1.20062 1.21470 0.93706 0.90303 1.52662 0.91949 1.19370 0.87460 0.82693 0.98436 1.47402 1.47668 1.35552 1.02744 1.20134 0.96024 0.93458 0.85386 1.20441 0.97034 0.95118 0.97297 1.21239 0.99625 0.92287 0.98291 1.21106 0.95668 0.98991 0.99071 1.21082 0.97765 0.96607 0.98891 1.21094 0.99627 0.93027 1.00862 1.21189 0.94113 0.99351 0.97263 1.15784 0.80799 0.81593 0.80649 1.90827 1.39055 1.31574 1.86473 1.42915 1.43675 1.43398 1.02898 1.17411 0.91116 0.95553 0.85500 1.21005 0.99857 1.04031 0.92528 1.20782 0.94413 0.98041 0.97335 1.20883 0.94064 1.04086 0.97391 1.20672 0.85630 1.02544 0.95160 1.98348 1.17683 1.90289 1.98600 1.21094 0.94339 1.01003 0.97464 0.92333 0.94034 0.95395 0.89266 0.89858 0.85517 0.86627 0.86717 0.86430 0.85748 0.73968 0.85181 0.85065 0.85406 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 13.29 55.43 0.74 -22.52 16 2 C 0.07 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -13.31 9.39 -34.44 -0.32 -13.64 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.24 5.33 4.97 -5.19 -0.03 5.30 16 10 N -0.60 -12.00 2.44 -182.18 -0.44 -12.45 16 11 C 0.17 3.09 5.53 -5.19 -0.03 3.06 16 12 C -0.10 -1.62 5.46 -104.62 -0.57 -2.19 16 13 C -0.10 -1.54 9.70 -39.58 -0.38 -1.92 16 14 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 15 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 16 C -0.13 -1.77 10.05 -39.58 -0.40 -2.17 16 17 C -0.10 -1.57 9.70 -39.58 -0.38 -1.96 16 18 C 0.71 14.35 8.02 -86.92 -0.70 13.65 16 19 O -0.60 -12.74 13.15 5.29 0.07 -12.67 16 20 N -0.68 -12.60 5.22 -14.23 -0.07 -12.68 16 21 C 0.20 3.41 6.28 -83.70 -0.53 2.88 16 22 C -0.15 -2.12 9.96 -39.39 -0.39 -2.52 16 23 C -0.09 -1.03 10.04 -39.62 -0.40 -1.43 16 24 C -0.14 -1.81 9.83 -39.51 -0.39 -2.20 16 25 C -0.01 -0.19 6.32 -39.53 -0.25 -0.44 16 26 Cl -0.08 -1.07 28.95 -51.86 -1.50 -2.57 16 27 C -0.12 -2.01 8.44 -39.36 -0.33 -2.34 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 30 H 0.03 0.64 6.29 -51.93 -0.33 0.31 16 31 H 0.09 1.54 8.02 -51.93 -0.42 1.12 16 32 H 0.08 1.47 7.36 -51.93 -0.38 1.09 16 33 H 0.13 2.12 7.60 -52.48 -0.40 1.72 16 34 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.11 1.21 8.06 -52.48 -0.42 0.79 16 36 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 37 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.42 7.75 6.51 -40.82 -0.27 7.48 16 39 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 42 H 0.15 2.81 6.40 -52.48 -0.34 2.48 16 LS Contribution 375.93 15.07 5.67 5.67 Total: -1.00 -27.41 375.93 -11.61 -39.02 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.05 Total: 11.91 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -5.99 Total: -8.59 kcal Atomic # 7 Polarization: -47.86 SS G_CDS: 0.22 Total: -47.65 kcal Atomic # 8 Polarization: -12.74 SS G_CDS: 0.07 Total: -12.67 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.41 -11.61 -39.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005682813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.474 kcal (2) G-P(sol) polarization free energy of solvation -27.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds