Wall clock time and date at job start Tue Mar 31 2020 05:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86794 * 120.00454 * 2 1 4 4 H 1.48497 * 109.47052 * 269.99477 * 3 2 1 5 5 H 1.48498 * 109.46967 * 29.99792 * 3 2 1 6 6 H 1.48495 * 109.47122 * 149.99583 * 3 2 1 7 7 C 1.38649 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99648 * 0.02562 * 7 2 1 9 9 O 1.34802 * 119.99949 * 179.97438 * 7 2 1 10 10 C 1.35650 * 116.99971 * 185.06029 * 9 7 2 11 11 C 1.39084 * 119.91283 * 354.44910 * 10 9 7 12 12 C 1.37705 * 120.09119 * 180.02562 * 11 10 9 13 13 C 1.39825 * 119.90914 * 0.02562 * 12 11 10 14 14 C 1.47341 * 120.08809 * 179.97438 * 13 12 11 15 15 N 1.29862 * 120.00297 * 179.97438 * 14 13 12 16 16 N 1.40100 * 120.00084 * 179.97438 * 15 14 13 17 17 C 1.34779 * 119.99451 * 180.02562 * 16 15 14 18 18 O 1.21595 * 120.00319 * 359.97438 * 17 16 15 19 19 C 1.47731 * 119.99432 * 180.02562 * 17 16 15 20 20 C 1.39638 * 120.13348 * 359.72065 * 19 17 16 21 21 C 1.37899 * 119.86314 * 179.74311 * 20 19 17 22 22 C 1.38513 * 120.12843 * 0.53209 * 21 20 19 23 23 Cl 1.73602 * 119.86286 * 179.69684 * 22 21 20 24 24 C 1.38522 * 120.27591 * 359.72608 * 22 21 20 25 25 C 1.37888 * 120.13145 * 0.02562 * 24 22 21 26 26 C 1.39817 * 119.82510 * 0.02562 * 13 12 11 27 27 C 1.37717 * 119.91204 * 0.02562 * 26 13 12 28 28 H 0.97005 * 119.99077 * 0.02562 * 1 2 3 29 29 H 1.08001 * 119.95684 * 359.97438 * 11 10 9 30 30 H 1.07993 * 120.04863 * 179.72754 * 12 11 10 31 31 H 1.08006 * 120.00146 * 359.97438 * 14 13 12 32 32 H 0.96995 * 120.00103 * 0.02562 * 16 15 14 33 33 H 1.07999 * 120.07462 * 0.02562 * 20 19 17 34 34 H 1.07989 * 119.93419 * 180.23535 * 21 20 19 35 35 H 1.07994 * 119.93065 * 179.97438 * 24 22 21 36 36 H 1.07996 * 120.06689 * 179.97438 * 25 24 22 37 37 H 1.07997 * 120.04614 * 180.02562 * 26 13 12 38 38 H 1.07996 * 119.95782 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4974 2.0462 -1.4000 5 1 1.4472 2.6526 0.7000 6 1 3.5472 1.4400 0.7001 7 6 2.0088 -1.2008 0.0005 8 1 1.4687 -2.1360 0.0005 9 8 3.3568 -1.2009 0.0000 10 6 3.9725 -2.4050 -0.1060 11 6 3.2182 -3.5734 -0.0913 12 6 3.8394 -4.7977 -0.1982 13 6 5.2306 -4.8652 -0.3211 14 6 5.8995 -6.1730 -0.4351 15 7 7.1916 -6.2338 -0.5496 16 7 7.8277 -7.4774 -0.6575 17 6 9.1688 -7.5404 -0.7759 18 8 9.8266 -6.5178 -0.7895 19 6 9.8393 -8.8517 -0.8902 20 6 9.0870 -10.0279 -0.8701 21 6 9.7182 -11.2488 -0.9826 22 6 11.0966 -11.3102 -1.1042 23 17 11.8848 -12.8512 -1.2374 24 6 11.8489 -10.1471 -1.1194 25 6 11.2287 -8.9202 -1.0128 26 6 5.9855 -3.6884 -0.3343 27 6 5.3567 -2.4679 -0.2259 28 1 -0.4849 0.8402 -0.0004 29 1 2.1438 -3.5205 0.0048 30 1 3.2535 -5.7047 -0.1823 31 1 5.3152 -7.0813 -0.4235 32 1 7.3028 -8.2931 -0.6471 33 1 8.0125 -9.9815 -0.7713 34 1 9.1372 -12.1590 -0.9710 35 1 12.9233 -10.2015 -1.2140 36 1 11.8163 -8.0141 -1.0243 37 1 7.0602 -3.7363 -0.4295 38 1 5.9391 -1.5585 -0.2357 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005714701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:18 Heat of formation + Delta-G solvation = 29.694093 kcal Electronic energy + Delta-G solvation = -24247.975886 eV Core-core repulsion = 20276.364009 eV Total energy + Delta-G solvation = -3971.611877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55441 -39.33032 -38.80839 -37.30292 -36.94990 -35.98245 -32.99808 -32.49216 -31.64069 -31.15519 -30.45517 -28.69711 -25.68423 -24.53852 -23.45899 -22.63594 -22.17881 -20.85848 -20.33081 -18.69012 -18.06026 -17.47033 -17.09964 -16.88581 -15.90768 -15.48217 -15.34826 -15.01696 -14.83307 -14.46906 -14.18708 -14.05259 -13.97565 -13.85711 -13.78013 -12.81880 -12.77440 -12.75390 -12.41185 -12.34443 -12.16069 -11.99852 -11.43424 -11.41786 -11.40019 -10.91252 -10.85342 -10.36452 -10.28268 -10.04688 -9.73328 -9.52737 -9.41121 -9.28277 -8.85687 -8.41350 -7.28957 -6.57201 -4.21817 0.08539 0.64812 1.25099 1.48744 2.07986 2.31699 2.34696 2.84251 3.15441 3.19413 3.32968 3.34536 4.06141 4.12335 4.12713 4.22932 4.44362 4.57253 4.68319 4.69962 4.76087 4.90386 4.97442 5.03160 5.28735 5.44368 5.46107 5.54812 5.61296 5.66726 5.82925 6.01136 6.04830 6.20111 6.43761 6.67259 6.87273 6.96547 7.03903 7.11615 7.44107 7.47666 7.64915 7.87387 8.29061 8.76792 9.37216 10.49146 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.044424 B = 0.001456 C = 0.001411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.133613 B =19230.136741 C =19844.649134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.391 4.391 8 H 0.111 0.889 9 O -0.204 6.204 10 C 0.177 3.823 11 C -0.230 4.230 12 C -0.035 4.035 13 C -0.167 4.167 14 C 0.152 3.848 15 N -0.265 5.265 16 N -0.581 5.581 17 C 0.574 3.426 18 O -0.500 6.500 19 C -0.123 4.123 20 C -0.076 4.076 21 C -0.116 4.116 22 C -0.013 4.013 23 Cl -0.062 7.062 24 C -0.116 4.116 25 C -0.044 4.044 26 C -0.026 4.026 27 C -0.201 4.201 28 H 0.282 0.718 29 H 0.138 0.862 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.378 0.622 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.150 0.850 37 H 0.128 0.872 38 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.790 -23.999 -1.931 29.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.182 1.182 7 C -0.466 4.466 8 H 0.128 0.872 9 O -0.107 6.107 10 C 0.122 3.878 11 C -0.249 4.249 12 C -0.055 4.055 13 C -0.171 4.171 14 C -0.055 4.055 15 N -0.070 5.070 16 N -0.323 5.323 17 C 0.361 3.639 18 O -0.373 6.373 19 C -0.127 4.127 20 C -0.094 4.094 21 C -0.135 4.135 22 C -0.040 4.040 23 Cl -0.033 7.033 24 C -0.135 4.135 25 C -0.063 4.063 26 C -0.046 4.046 27 C -0.220 4.220 28 H 0.093 0.907 29 H 0.156 0.844 30 H 0.134 0.866 31 H 0.127 0.873 32 H 0.217 0.783 33 H 0.153 0.847 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.145 0.855 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 19.126 -22.637 -1.989 29.702 hybrid contribution -0.918 -0.676 0.020 1.140 sum 18.208 -23.313 -1.969 29.647 Atomic orbital electron populations 1.69645 1.05652 1.28882 1.46385 1.24517 0.95075 0.99064 0.95228 0.86168 0.80414 0.81142 0.79199 1.19666 1.20581 1.18165 1.20845 0.76685 0.96877 1.52239 0.87218 1.83545 1.22905 1.26154 1.78093 1.19354 0.91761 0.85376 0.91345 1.21159 1.01310 0.91525 1.10897 1.20832 0.92399 0.97140 0.95149 1.17830 0.92687 0.89839 1.16734 1.24480 0.90411 0.97612 0.93003 1.75164 1.11285 1.03052 1.17516 1.46783 1.07211 1.05208 1.73069 1.17834 0.80386 0.88744 0.76973 1.90816 1.63875 1.35595 1.47029 1.19999 0.94710 0.92561 1.05470 1.21302 1.00028 0.91129 0.96987 1.21009 0.92526 0.98824 1.01135 1.21237 0.93201 0.87291 1.02247 1.98400 1.80478 1.28356 1.96106 1.21101 1.00944 0.90338 1.01086 1.21287 0.92998 0.98276 0.93764 1.20922 0.99325 0.90594 0.93784 1.20200 0.91757 0.98171 1.11895 0.90749 0.84412 0.86577 0.87344 0.78348 0.84684 0.84053 0.83904 0.83267 0.85456 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.92 13.96 55.48 0.77 -23.14 16 2 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 20.76 28.62 -169.99 -4.86 15.90 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.39 -10.42 9.94 30.88 0.31 -10.11 16 8 H 0.11 2.94 5.42 -52.49 -0.28 2.66 16 9 O -0.20 -5.11 8.58 0.44 0.00 -5.11 16 10 C 0.18 3.84 6.65 -38.95 -0.26 3.58 16 11 C -0.23 -4.50 9.15 -39.46 -0.36 -4.86 16 12 C -0.03 -0.55 9.78 -39.18 -0.38 -0.93 16 13 C -0.17 -2.64 5.87 -105.01 -0.62 -3.26 16 14 C 0.15 1.99 10.75 -14.68 -0.16 1.83 16 15 N -0.26 -3.89 10.15 32.14 0.33 -3.56 16 16 N -0.58 -6.72 6.21 30.51 0.19 -6.53 16 17 C 0.57 7.23 7.89 -12.38 -0.10 7.13 16 18 O -0.50 -8.40 16.68 5.28 0.09 -8.31 16 19 C -0.12 -1.10 5.87 -104.97 -0.62 -1.71 16 20 C -0.08 -0.47 9.54 -39.18 -0.37 -0.84 16 21 C -0.12 -0.67 9.81 -39.60 -0.39 -1.05 16 22 C -0.01 -0.08 6.33 -39.37 -0.25 -0.33 16 23 Cl -0.06 -0.39 28.95 -51.86 -1.50 -1.89 16 24 C -0.12 -0.76 9.81 -39.60 -0.39 -1.14 16 25 C -0.04 -0.36 9.59 -39.18 -0.38 -0.73 16 26 C -0.03 -0.45 9.57 -39.18 -0.37 -0.83 16 27 C -0.20 -3.86 9.97 -39.46 -0.39 -4.25 16 28 H 0.28 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.14 2.81 5.62 -52.49 -0.29 2.51 16 30 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.11 0.99 8.02 -52.48 -0.42 0.57 16 32 H 0.38 2.83 6.68 -182.60 -1.22 1.61 16 33 H 0.14 0.50 6.40 -52.49 -0.34 0.16 16 34 H 0.14 0.53 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.15 1.20 7.65 -52.49 -0.40 0.80 16 37 H 0.13 2.15 7.55 -52.49 -0.40 1.75 16 38 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -31.56 358.37 -8.59 -40.15 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.18 Total: 2.95 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -4.83 Total: -15.85 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 1.29 Total: -33.24 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: 0.09 Total: -13.42 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.86 Total: 15.90 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.50 Total: -1.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.56 -8.59 -40.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005714701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.846 kcal (2) G-P(sol) polarization free energy of solvation -31.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds