Wall clock time and date at job start Tue Mar 31 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34871 * 116.99643 * 2 1 4 4 O 1.21615 * 120.00482 * 359.97438 * 3 2 1 5 5 C 1.46508 * 119.99792 * 179.97438 * 3 2 1 6 6 C 1.44321 * 123.45220 * 90.02331 * 5 3 2 7 7 C 1.47872 * 123.23202 * 0.04624 * 6 5 3 8 8 C 1.39705 * 120.15194 * 309.69730 * 7 6 5 9 9 C 1.37905 * 119.84335 * 179.69795 * 8 7 6 10 10 C 1.38418 * 120.15208 * 0.58079 * 9 8 7 11 11 C 1.50706 * 119.84589 * 179.74013 * 10 9 8 12 12 C 1.38428 * 120.30645 * 359.72269 * 10 9 8 13 13 C 1.37894 * 120.15163 * 359.97122 * 12 10 9 14 14 C 1.36628 * 113.52913 * 180.02562 * 6 5 3 15 15 S 1.75489 * 110.76334 * 359.97438 * 14 6 5 16 16 C 1.38223 * 123.44907 * 270.02196 * 5 3 2 17 17 N 1.36939 * 124.83817 * 0.02562 * 16 5 3 18 18 C 1.34781 * 120.00653 * 179.97438 * 17 16 5 19 19 O 1.21981 * 119.99266 * 0.02562 * 18 17 16 20 20 C 1.40304 * 120.00582 * 179.97438 * 18 17 16 21 21 H 1.07998 * 119.99475 * 0.02562 * 20 18 17 22 22 C 1.40054 * 120.00401 * 180.02562 * 20 18 17 23 23 N 1.30686 * 119.99620 * 359.97438 * 22 20 18 24 24 Si 1.86796 * 120.00229 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47136 * 59.99815 * 24 22 20 26 26 H 1.48497 * 109.47074 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47136 * 300.00018 * 24 22 20 28 28 H 1.09002 * 109.47088 * 60.00386 * 1 2 3 29 29 H 1.08999 * 109.47258 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47733 * 300.00051 * 1 2 3 31 31 H 1.08001 * 120.07439 * 0.02562 * 8 7 6 32 32 H 1.08006 * 119.91798 * 180.29843 * 9 8 7 33 33 H 1.09005 * 109.46945 * 269.97964 * 11 10 9 34 34 H 1.08994 * 109.47085 * 29.97618 * 11 10 9 35 35 H 1.08996 * 109.46996 * 149.98037 * 11 10 9 36 36 H 1.08001 * 119.92210 * 179.97438 * 12 10 9 37 37 H 1.08004 * 120.07699 * 180.02562 * 13 12 10 38 38 H 1.08003 * 124.61328 * 180.26334 * 14 6 5 39 39 H 0.96998 * 119.99956 * 359.97438 * 17 16 5 40 40 H 0.97001 * 120.00304 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2017 0.0000 4 8 1.4019 2.2217 -0.0005 5 6 3.5273 1.2785 0.0006 6 6 4.3222 1.3204 -1.2033 7 6 3.7382 1.2910 -2.5615 8 6 2.8013 0.3120 -2.9014 9 6 2.2561 0.2943 -4.1680 10 6 2.6440 1.2363 -5.1052 11 6 2.0480 1.2069 -6.4891 12 6 3.5765 2.2053 -4.7770 13 6 4.1251 2.2385 -3.5123 14 6 5.6661 1.3902 -0.9673 15 16 5.9951 1.4073 0.7564 16 6 4.2877 1.3181 1.1542 17 7 3.7813 1.2909 2.4262 18 6 4.6148 1.3340 3.4845 19 8 5.8202 1.3977 3.3092 20 6 4.0959 1.3066 4.7878 21 1 3.0286 1.2506 4.9430 22 6 4.9620 1.3519 5.8875 23 7 6.2535 1.4191 5.6997 24 14 4.2712 1.3147 7.6227 25 1 3.5027 0.0598 7.8227 26 1 5.3869 1.3726 8.6010 27 1 3.3749 2.4814 7.8237 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 2.5009 -0.4260 -2.1724 32 1 1.5281 -0.4591 -4.4306 33 1 2.6606 0.5781 -7.1352 34 1 1.0371 0.8024 -6.4408 35 1 2.0155 2.2191 -6.8921 36 1 3.8750 2.9370 -5.5131 37 1 4.8522 2.9953 -3.2574 38 1 6.4227 1.4340 -1.7368 39 1 2.8227 1.2406 2.5656 40 1 6.8535 1.4509 6.4613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006277724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:29 Heat of formation + Delta-G solvation = -76.640391 kcal Electronic energy + Delta-G solvation = -27000.307947 eV Core-core repulsion = 23064.243199 eV Total energy + Delta-G solvation = -3936.064747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.087 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.20555 -39.15029 -38.54683 -36.54090 -35.81448 -34.04617 -32.84300 -32.00853 -30.90952 -28.99864 -27.87435 -26.97830 -26.36821 -23.80879 -22.49382 -22.00225 -21.26918 -20.23785 -19.30029 -17.93006 -17.40713 -16.86602 -16.31512 -15.94302 -15.74102 -15.33425 -15.14291 -14.83636 -14.36304 -14.26038 -13.89696 -13.78944 -13.42843 -13.33781 -13.05614 -12.92310 -12.69048 -12.45679 -12.20331 -11.95215 -11.84018 -11.69238 -11.59573 -11.21537 -11.16686 -10.95397 -10.91138 -10.60159 -10.56064 -10.43872 -9.97738 -9.88643 -9.17829 -8.86729 -8.58050 -8.09993 -7.64741 -7.06573 -6.67721 -5.24208 1.17365 1.50061 1.71299 1.96852 2.40997 2.66047 2.86638 2.94267 2.99713 3.01712 3.32537 3.76910 3.87333 4.11250 4.29024 4.84196 4.87582 5.03569 5.16444 5.20716 5.25860 5.27826 5.30617 5.36490 5.45917 5.51562 5.61135 5.68911 5.73581 5.78973 5.89927 6.12311 6.18250 6.38996 6.46012 6.58805 6.62263 6.72615 6.87028 6.95908 7.08067 7.31400 7.57418 7.70709 8.05863 8.48763 8.76298 9.95589 10.19219 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019109 B = 0.003050 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.934281 B = 9178.160860 C =10321.004841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.354 6.354 3 C 0.552 3.448 4 O -0.503 6.503 5 C -0.265 4.265 6 C -0.007 4.007 7 C -0.021 4.021 8 C -0.107 4.107 9 C -0.120 4.120 10 C -0.096 4.096 11 C -0.111 4.111 12 C -0.121 4.121 13 C -0.100 4.100 14 C -0.315 4.315 15 S 0.288 5.712 16 C 0.146 3.854 17 N -0.643 5.643 18 C 0.523 3.477 19 O -0.546 6.546 20 C -0.520 4.520 21 H 0.076 0.924 22 C 0.086 3.914 23 N -0.732 5.732 24 Si 0.920 3.080 25 H -0.263 1.263 26 H -0.275 1.275 27 H -0.263 1.263 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.120 0.880 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.157 0.843 39 H 0.400 0.600 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 -2.637 -15.019 16.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.271 6.271 3 C 0.394 3.606 4 O -0.390 6.390 5 C -0.281 4.281 6 C -0.020 4.020 7 C -0.023 4.023 8 C -0.126 4.126 9 C -0.138 4.138 10 C -0.096 4.096 11 C -0.168 4.168 12 C -0.139 4.139 13 C -0.119 4.119 14 C -0.450 4.450 15 S 0.547 5.453 16 C -0.081 4.081 17 N -0.281 5.281 18 C 0.335 3.665 19 O -0.432 6.432 20 C -0.554 4.554 21 H 0.094 0.906 22 C -0.140 4.140 23 N -0.358 5.358 24 Si 0.743 3.257 25 H -0.188 1.188 26 H -0.200 1.200 27 H -0.188 1.188 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.138 0.862 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.175 0.825 39 H 0.235 0.765 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.544 -2.212 -14.009 14.892 hybrid contribution -2.493 -0.063 0.090 2.496 sum -7.037 -2.274 -13.919 15.762 Atomic orbital electron populations 1.23234 0.77294 1.03339 1.02367 1.86760 1.22551 1.33577 1.84213 1.20461 0.88228 0.81005 0.70949 1.90829 1.67089 1.36209 1.44863 1.18250 0.89058 1.29096 0.91731 1.18066 0.91124 1.03104 0.89662 1.18596 0.96350 0.95397 0.92003 1.21427 0.96187 0.98295 0.96641 1.20903 1.00607 0.98977 0.93311 1.19964 0.97635 0.95954 0.96089 1.20763 1.00441 1.02340 0.93253 1.20906 0.97693 0.98851 0.96455 1.21270 0.99749 0.98119 0.92733 1.26758 0.97884 1.15720 1.04667 1.85483 0.97045 1.70655 0.92093 1.22583 0.99669 0.97619 0.88184 1.43591 1.11365 1.70947 1.02213 1.17001 0.85804 0.79679 0.83977 1.90626 1.13852 1.56259 1.82415 1.19670 0.95219 1.51004 0.89516 0.90627 1.25795 0.94363 0.92326 1.01477 1.69985 1.03183 1.29549 1.33103 0.86194 0.79398 0.80002 0.80066 1.18761 1.19996 1.18765 0.92164 0.88345 0.92001 0.85443 0.86248 0.91393 0.91775 0.91749 0.86163 0.85718 0.82504 0.76498 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.57 101.05 1.07 1.46 16 2 O -0.35 -5.83 9.57 -40.96 -0.39 -6.23 16 3 C 0.55 10.58 5.56 34.06 0.19 10.77 16 4 O -0.50 -10.59 16.91 -19.35 -0.33 -10.91 16 5 C -0.26 -5.29 5.86 -104.18 -0.61 -5.90 16 6 C -0.01 -0.13 5.55 -104.15 -0.58 -0.71 16 7 C -0.02 -0.35 5.40 -104.86 -0.57 -0.91 16 8 C -0.11 -1.59 8.87 -39.16 -0.35 -1.94 16 9 C -0.12 -1.50 9.68 -39.64 -0.38 -1.88 16 10 C -0.10 -1.12 5.89 -104.48 -0.62 -1.73 16 11 C -0.11 -0.92 10.01 36.01 0.36 -0.56 16 12 C -0.12 -1.46 9.68 -39.64 -0.38 -1.85 16 13 C -0.10 -1.41 9.63 -39.16 -0.38 -1.79 16 14 C -0.31 -5.38 10.88 30.15 0.33 -5.05 16 15 S 0.29 5.78 20.17 -107.50 -2.17 3.61 16 16 C 0.15 3.14 7.14 -15.28 -0.11 3.03 16 17 N -0.64 -14.63 5.30 -13.48 -0.07 -14.70 16 18 C 0.52 13.72 7.47 -15.48 -0.12 13.61 16 19 O -0.55 -15.54 12.23 4.94 0.06 -15.48 16 20 C -0.52 -13.35 9.23 -38.12 -0.35 -13.70 16 21 H 0.08 1.76 7.85 -52.49 -0.41 1.35 16 22 C 0.09 2.15 5.49 -17.36 -0.10 2.06 16 23 N -0.73 -19.56 11.70 55.55 0.65 -18.91 16 24 Si 0.92 18.18 29.56 -169.99 -5.02 13.15 16 25 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 26 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 27 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.13 1.91 6.79 -52.49 -0.36 1.55 16 32 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 35 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.12 1.61 8.06 -52.48 -0.42 1.19 16 38 H 0.16 2.24 8.06 -52.48 -0.42 1.82 16 39 H 0.40 8.30 8.10 -40.82 -0.33 7.96 16 40 H 0.28 6.72 8.29 -40.82 -0.34 6.38 16 LS Contribution 365.64 15.07 5.51 5.51 Total: -1.00 -31.53 365.64 -8.81 -40.34 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -4.45 Total: 8.72 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -2.59 Total: -5.10 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: 0.58 Total: -33.61 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.66 Total: -32.62 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.02 Total: 13.15 kcal Atomic # 16 Polarization: 5.78 SS G_CDS: -2.17 Total: 3.61 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.53 -8.81 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006277724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.302 kcal (2) G-P(sol) polarization free energy of solvation -31.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds