Wall clock time and date at job start Tue Mar 31 2020 06:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00215 * 2 1 4 4 C 1.50701 * 109.46858 * 124.99676 * 3 2 1 5 5 C 1.38275 * 119.95450 * 265.00246 * 4 3 2 6 6 C 1.38387 * 120.38005 * 179.72561 * 5 4 3 7 7 C 1.37957 * 120.27589 * 0.02562 * 6 5 4 8 8 C 1.39633 * 119.89744 * 359.97438 * 7 6 5 9 9 C 1.47379 * 120.19058 * 179.97438 * 8 7 6 10 10 N 1.29825 * 120.00141 * 179.97438 * 9 8 7 11 11 N 1.40100 * 120.00394 * 180.02562 * 10 9 8 12 12 C 1.38236 * 120.00429 * 180.02562 * 11 10 9 13 13 N 1.31585 * 125.99731 * 0.02562 * 12 11 10 14 14 C 1.33806 * 109.67201 * 179.97438 * 13 12 11 15 15 S 1.76194 * 125.53014 * 180.02562 * 14 13 12 16 16 C 1.76198 * 100.00034 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00323 * 0.02562 * 16 15 14 18 18 C 1.38677 * 119.99871 * 179.97438 * 16 15 14 19 19 N 1.31651 * 119.99867 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99832 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47024 * 60.00394 * 20 18 16 22 22 H 1.48496 * 109.47013 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46770 * 300.00464 * 20 18 16 24 24 N 1.31310 * 108.94185 * 0.02562 * 14 13 12 25 25 N 1.35122 * 125.99845 * 179.71730 * 12 11 10 26 26 H 0.97005 * 126.77799 * 359.97310 * 25 12 11 27 27 C 1.38472 * 119.94621 * 84.73213 * 4 3 2 28 28 O 1.35824 * 120.13934 * 0.29238 * 27 4 3 29 29 H 1.08004 * 119.99977 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00197 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00211 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.46375 * 5.00250 * 3 2 1 33 33 H 1.08996 * 109.47288 * 244.99995 * 3 2 1 34 34 H 1.08002 * 119.80796 * 359.74769 * 5 4 3 35 35 H 1.08003 * 119.86078 * 179.97438 * 6 5 4 36 36 H 1.08008 * 120.05358 * 179.97438 * 7 6 5 37 37 H 1.07997 * 119.99535 * 0.02562 * 9 8 7 38 38 H 0.97002 * 119.99387 * 0.02562 * 11 10 9 39 39 H 0.97010 * 120.00027 * 179.97438 * 19 18 16 40 40 H 0.96705 * 113.99579 * 89.99901 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0204 1.3326 1.1639 5 6 2.6440 1.9293 2.3532 6 6 3.5136 1.9545 3.4294 7 6 4.7656 1.3845 3.3256 8 6 5.1576 0.7789 2.1301 9 6 6.4938 0.1685 2.0119 10 7 6.8543 -0.3940 0.8987 11 7 8.1243 -0.9748 0.7865 12 6 8.5084 -1.5733 -0.3989 13 7 7.7799 -1.6643 -1.4909 14 6 8.4702 -2.3060 -2.4408 15 16 7.8911 -2.6559 -4.0676 16 6 9.2975 -3.4937 -4.7194 17 1 10.1722 -3.6407 -4.1031 18 6 9.2809 -3.9654 -6.0234 19 7 8.2145 -3.7867 -6.7744 20 14 10.7716 -4.8543 -6.7141 21 1 11.0485 -6.0640 -5.8986 22 1 10.5025 -5.2545 -8.1185 23 1 11.9491 -3.9504 -6.6744 24 7 9.6492 -2.6325 -1.9638 25 7 9.7000 -2.1624 -0.6416 26 1 10.4433 -2.2456 -0.0238 27 6 4.2732 0.7553 1.0426 28 8 4.6439 0.1694 -0.1253 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1315 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 1.6656 2.3778 2.4427 35 1 3.2110 2.4232 4.3543 36 1 5.4415 1.4067 4.1677 37 1 7.1727 0.1885 2.8515 38 1 8.7342 -0.9569 1.5406 39 1 8.2030 -4.1164 -7.6867 40 1 5.0788 0.7701 -0.7459 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006856331.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:04 Heat of formation + Delta-G solvation = 141.274135 kcal Electronic energy + Delta-G solvation = -25612.945237 eV Core-core repulsion = 21750.915474 eV Total energy + Delta-G solvation = -3862.029762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.100 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06889 -40.18490 -37.31612 -36.53403 -35.36034 -33.24775 -32.54991 -31.75697 -31.10208 -30.00989 -28.39250 -26.59136 -25.53062 -24.12458 -22.41166 -22.08587 -21.01790 -20.41610 -19.83726 -18.65163 -18.14790 -17.53665 -17.16647 -16.17746 -15.59209 -15.56400 -15.30033 -15.16331 -14.85863 -14.83974 -14.60942 -14.04655 -13.64507 -13.54160 -13.22045 -12.90801 -12.44665 -12.33066 -11.86678 -11.76957 -11.43842 -11.29631 -11.07333 -11.04118 -10.91366 -10.79033 -10.51551 -10.11323 -10.02082 -9.84383 -9.44658 -9.33415 -9.09687 -8.89796 -8.71123 -8.55798 -7.79151 -6.62870 -6.33327 -4.05349 0.59337 1.07561 1.94931 2.06403 2.22095 2.60713 2.92136 3.26011 3.27632 3.33451 3.50998 3.76980 3.77297 4.16609 4.17856 4.36367 4.47157 4.59652 4.81562 4.90017 4.99161 5.02884 5.08602 5.13567 5.18989 5.35214 5.48017 5.55111 5.67832 5.79090 5.85733 5.94254 6.12462 6.21748 6.23584 6.32045 6.51538 6.60333 6.69020 6.70509 7.19448 7.65245 7.78213 7.82985 7.93213 8.42805 8.89277 9.16946 10.74458 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.014259 B = 0.002370 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.265776 B =11812.662525 C =13608.706053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.134 4.134 3 C -0.049 4.049 4 C -0.111 4.111 5 C -0.091 4.091 6 C -0.134 4.134 7 C -0.085 4.085 8 C -0.070 4.070 9 C 0.066 3.934 10 N -0.155 5.155 11 N -0.553 5.553 12 C 0.528 3.472 13 N -0.524 5.524 14 C 0.219 3.781 15 S 0.161 5.839 16 C -0.544 4.544 17 H 0.095 0.905 18 C 0.076 3.924 19 N -0.875 5.875 20 Si 0.928 3.072 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 N -0.324 5.324 25 N -0.524 5.524 26 H 0.425 0.575 27 C 0.151 3.849 28 O -0.463 6.463 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.392 0.608 39 H 0.273 0.727 40 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.478 13.454 21.959 27.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.152 4.152 3 C -0.086 4.086 4 C -0.112 4.112 5 C -0.110 4.110 6 C -0.152 4.152 7 C -0.106 4.106 8 C -0.073 4.073 9 C -0.145 4.145 10 N 0.038 4.962 11 N -0.286 5.286 12 C 0.159 3.841 13 N -0.262 5.262 14 C -0.168 4.168 15 S 0.390 5.610 16 C -0.693 4.693 17 H 0.113 0.887 18 C -0.133 4.133 19 N -0.510 5.510 20 Si 0.754 3.246 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.197 1.197 24 N -0.161 5.161 25 N -0.248 5.248 26 H 0.268 0.732 27 C 0.102 3.898 28 O -0.274 6.274 29 H 0.115 0.885 30 H 0.112 0.888 31 H 0.132 0.868 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.232 0.768 39 H 0.083 0.917 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.881 12.603 19.888 25.938 hybrid contribution 3.517 -0.342 1.963 4.042 sum -7.364 12.261 21.851 26.116 Atomic orbital electron populations 1.23796 0.95809 1.01655 1.02728 1.22891 0.95659 0.98387 0.98304 1.19626 0.96513 0.95954 0.96491 1.20113 0.95137 0.99334 0.96578 1.21038 0.99451 0.98446 0.92040 1.20961 0.93940 1.01367 0.98974 1.21048 0.96624 0.96973 0.95962 1.18694 0.91670 1.01730 0.95237 1.24116 0.96188 0.99603 0.94625 1.75191 0.95488 1.03550 1.21956 1.43842 1.13266 1.60675 1.10796 1.19742 0.84476 0.92195 0.87659 1.70928 1.30352 1.27114 0.97827 1.27376 0.90501 0.95801 1.03104 1.83769 1.20619 1.66290 0.90304 1.23166 1.03056 1.42220 1.00897 0.88670 1.25021 0.97413 0.95339 0.95522 1.69959 1.27986 1.44010 1.09056 0.86062 0.81246 0.79732 0.77576 1.19711 1.20800 1.19718 1.78675 1.21013 1.28272 0.88128 1.47920 1.13223 1.49825 1.13851 0.73206 1.18514 0.91218 0.92392 0.87631 1.84904 1.79514 1.37839 1.25128 0.88515 0.88838 0.86827 0.90778 0.89441 0.85762 0.85594 0.85409 0.86693 0.76835 0.91701 0.74708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.78 14.32 29.02 0.42 -1.37 16 2 C -0.13 -1.36 9.50 -36.02 -0.34 -1.70 16 3 C -0.05 -0.44 5.50 -29.03 -0.16 -0.60 16 4 C -0.11 -1.06 5.12 -104.52 -0.54 -1.60 16 5 C -0.09 -0.71 9.66 -39.51 -0.38 -1.09 16 6 C -0.13 -0.93 10.03 -39.63 -0.40 -1.32 16 7 C -0.09 -0.63 9.79 -39.16 -0.38 -1.02 16 8 C -0.07 -0.70 5.88 -104.92 -0.62 -1.32 16 9 C 0.07 0.68 10.75 -14.68 -0.16 0.52 16 10 N -0.16 -2.14 9.18 32.15 0.29 -1.85 16 11 N -0.55 -7.51 6.41 30.05 0.19 -7.31 16 12 C 0.53 9.69 9.12 -320.74 -2.92 6.77 16 13 N -0.52 -11.89 11.12 -14.13 -0.16 -12.04 16 14 C 0.22 5.48 8.20 -90.81 -0.74 4.73 16 15 S 0.16 4.39 21.89 -107.50 -2.35 2.04 16 16 C -0.54 -15.72 9.36 30.89 0.29 -15.43 16 17 H 0.10 2.76 6.87 -52.49 -0.36 2.40 16 18 C 0.08 2.14 5.49 -17.47 -0.10 2.05 16 19 N -0.87 -25.36 13.22 55.48 0.73 -24.62 16 20 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 N -0.32 -7.69 11.51 30.16 0.35 -7.34 16 25 N -0.52 -9.37 7.47 30.04 0.22 -9.15 16 26 H 0.42 5.52 8.96 -182.35 -1.63 3.88 16 27 C 0.15 1.69 6.69 -38.76 -0.26 1.43 16 28 O -0.46 -6.14 10.51 -19.19 -0.20 -6.34 16 29 H 0.10 0.80 8.06 -52.48 -0.42 0.38 16 30 H 0.09 0.68 7.84 -52.49 -0.41 0.27 16 31 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.07 0.54 7.70 -51.93 -0.40 0.14 16 33 H 0.09 0.81 7.69 -51.93 -0.40 0.41 16 34 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 36 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 37 H 0.12 0.77 8.02 -52.49 -0.42 0.35 16 38 H 0.39 3.59 8.78 -182.60 -1.60 1.99 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 40 H 0.39 4.45 9.06 45.56 0.41 4.87 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -36.05 375.13 -12.65 -48.69 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -6.07 Total: 5.58 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -6.29 Total: -9.94 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: 1.64 Total: -62.31 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.20 Total: -6.34 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 4.39 SS G_CDS: -2.35 Total: 2.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.05 -12.65 -48.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006856331.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.969 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds