Wall clock time and date at job start Tue Mar 31 2020 05:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00168 * 2 1 4 4 H 1.48505 * 109.47335 * 270.00170 * 3 2 1 5 5 H 1.48494 * 109.47020 * 30.00357 * 3 2 1 6 6 H 1.48503 * 109.46882 * 149.99948 * 3 2 1 7 7 C 1.37882 * 119.99741 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00266 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99780 * 179.97438 * 7 2 1 10 10 S 1.80997 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.76203 * 100.00062 * 179.97438 * 10 9 7 12 12 N 1.31126 * 119.22898 * 0.31792 * 11 10 9 13 13 C 1.34792 * 121.59793 * 180.30224 * 12 11 10 14 14 S 1.75898 * 130.70466 * 179.66987 * 13 12 11 15 15 C 1.75335 * 92.17530 * 179.97438 * 14 13 12 16 16 C 1.31871 * 111.31559 * 359.97438 * 15 14 13 17 17 C 1.39326 * 119.68677 * 359.64884 * 13 12 11 18 18 C 1.42682 * 118.00243 * 0.03513 * 17 13 12 19 19 O 1.21905 * 120.54505 * 179.97438 * 18 17 13 20 20 N 1.34717 * 118.90646 * 0.02562 * 18 17 13 21 21 C 1.40115 * 119.86824 * 179.97438 * 20 18 17 22 22 C 1.38842 * 120.06487 * 90.02808 * 21 20 18 23 23 C 1.38119 * 119.92724 * 179.69954 * 22 21 20 24 24 C 1.38280 * 120.07125 * 0.57618 * 23 22 21 25 25 C 1.38280 * 120.13144 * 359.72320 * 24 23 22 26 26 C 1.38119 * 120.07191 * 359.97438 * 25 24 23 27 27 H 0.96995 * 119.99681 * 359.97438 * 1 2 3 28 28 H 1.08999 * 109.46893 * 59.99890 * 9 7 2 29 29 H 1.08998 * 109.47299 * 299.99570 * 9 7 2 30 30 H 1.07993 * 124.33823 * 180.02562 * 15 14 13 31 31 H 1.07994 * 122.59403 * 180.02562 * 16 15 14 32 32 H 1.07998 * 120.04053 * 359.97438 * 22 21 20 33 33 H 1.08003 * 119.96604 * 180.30422 * 23 22 21 34 34 H 1.07992 * 119.93601 * 179.70235 * 24 23 22 35 35 H 1.08006 * 119.96834 * 179.97438 * 25 24 23 36 36 H 1.07994 * 120.03626 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 16 4.1148 -2.9006 -0.0010 11 6 5.8528 -2.6107 -0.0025 12 7 6.2961 -1.3767 0.0030 13 6 7.6154 -1.1002 -0.0039 14 16 8.4645 0.4403 -0.0066 15 6 10.0310 -0.3473 -0.0154 16 6 9.9075 -1.6602 -0.0156 17 6 8.5390 -2.1432 -0.0098 18 6 8.0400 -3.4799 -0.0091 19 8 8.8069 -4.4276 -0.0146 20 7 6.7074 -3.6776 -0.0032 21 6 6.1954 -4.9818 -0.0029 22 6 5.9462 -5.6309 1.1989 23 6 5.4356 -6.9143 1.1959 24 6 5.1838 -7.5571 -0.0023 25 6 5.4368 -6.9154 -1.2008 26 6 5.9416 -5.6297 -1.2044 27 1 -0.4849 0.8400 0.0004 28 1 3.8752 -0.6805 0.8888 29 1 3.8745 -0.6802 -0.8911 30 1 10.9758 0.1758 -0.0193 31 1 10.7589 -2.3246 -0.0201 32 1 6.1472 -5.1314 2.1350 33 1 5.2370 -7.4180 2.1304 34 1 4.7892 -8.5623 -0.0021 35 1 5.2396 -7.4201 -2.1351 36 1 6.1385 -5.1290 -2.1408 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006907546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:23 Heat of formation + Delta-G solvation = 59.216140 kcal Electronic energy + Delta-G solvation = -24191.714657 eV Core-core repulsion = 20666.179530 eV Total energy + Delta-G solvation = -3525.535128 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 344.039 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84205 -39.09514 -37.50507 -36.55210 -34.12900 -33.19394 -31.11803 -30.06253 -29.75579 -29.23941 -25.62661 -24.27602 -22.83854 -22.81443 -22.61695 -21.05639 -19.24571 -18.29773 -17.88029 -17.06079 -16.68587 -16.43276 -16.34479 -15.24112 -14.77835 -14.76498 -14.36869 -14.28625 -13.82712 -13.65605 -13.59119 -13.51553 -12.96291 -12.93785 -12.84024 -12.51826 -12.37261 -11.83814 -11.38027 -11.16988 -11.13160 -10.88125 -10.44696 -10.20740 -10.19632 -10.01780 -9.96108 -9.52241 -9.08979 -8.95263 -8.87212 -8.67153 -8.43819 -7.34352 -6.32958 -4.39375 0.20886 1.00061 1.06259 1.26249 1.41194 1.64966 1.86942 2.06413 2.37989 3.00586 3.18688 3.27508 3.31410 3.47351 3.55099 4.22290 4.43260 4.57522 4.77435 4.78858 4.90290 4.95744 5.00056 5.05813 5.25021 5.35866 5.37966 5.61182 5.84055 5.85230 6.04747 6.11731 6.25196 6.29247 6.33615 6.43697 6.51399 6.55826 6.79745 7.20349 7.53376 7.79449 8.08077 8.62503 9.21539 10.77896 Molecular weight = 344.04amu Principal moments of inertia in cm(-1) A = 0.008120 B = 0.005480 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3447.623972 B = 5108.161276 C = 8250.037664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.090 3.910 3 Si 0.873 3.127 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.258 1.258 7 C -0.531 4.531 8 H 0.085 0.915 9 C 0.023 3.977 10 S 0.031 5.969 11 C 0.380 3.620 12 N -0.514 5.514 13 C 0.114 3.886 14 S 0.180 5.820 15 C -0.243 4.243 16 C -0.053 4.053 17 C -0.267 4.267 18 C 0.569 3.431 19 O -0.522 6.522 20 N -0.480 5.480 21 C 0.105 3.895 22 C -0.087 4.087 23 C -0.110 4.110 24 C -0.102 4.102 25 C -0.110 4.110 26 C -0.087 4.087 27 H 0.271 0.729 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.174 0.826 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.137 -7.591 0.011 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.698 3.302 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.570 4.570 8 H 0.103 0.897 9 C -0.125 4.125 10 S 0.269 5.731 11 C 0.007 3.993 12 N -0.242 5.242 13 C -0.125 4.125 14 S 0.441 5.559 15 C -0.378 4.378 16 C -0.083 4.083 17 C -0.286 4.286 18 C 0.365 3.635 19 O -0.398 6.398 20 N -0.200 5.200 21 C 0.015 3.985 22 C -0.106 4.106 23 C -0.129 4.129 24 C -0.120 4.120 25 C -0.129 4.129 26 C -0.106 4.106 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.191 0.809 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 13.964 -6.852 0.025 15.555 hybrid contribution 2.057 0.217 -0.032 2.068 sum 16.021 -6.636 -0.007 17.341 Atomic orbital electron populations 1.69842 1.06195 1.27716 1.48282 1.24755 0.94700 0.98767 0.93448 0.86859 0.80750 0.83254 0.79307 1.19594 1.20678 1.18193 1.20351 0.86224 0.95593 1.54863 0.89721 1.21883 1.00789 0.87641 1.02181 1.86273 0.83374 1.18465 1.84943 1.26250 0.99846 0.83492 0.89667 1.68695 1.12611 1.15306 1.27600 1.24058 0.92814 0.98432 0.97154 1.84180 0.95094 1.02446 1.74176 1.25015 1.01453 0.97558 1.13780 1.20376 0.94674 0.94659 0.98568 1.20593 0.94831 0.92328 1.20883 1.16591 0.80293 0.89331 0.77317 1.90884 1.54586 1.43764 1.50600 1.43994 1.06937 1.05698 1.63389 1.17587 1.02320 0.83740 0.94817 1.21162 0.97530 0.95180 0.96738 1.21025 0.99099 0.94054 0.98726 1.21289 0.98363 1.00029 0.92334 1.21025 0.99138 0.94021 0.98722 1.21166 0.97538 0.95166 0.96742 0.91905 0.92363 0.92855 0.80913 0.83485 0.85541 0.85008 0.85301 0.85012 0.85543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.30 13.96 55.43 0.77 -24.53 16 2 C 0.09 2.42 5.47 -17.82 -0.10 2.33 16 3 Si 0.87 20.21 27.47 -169.99 -4.67 15.54 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.26 -5.81 6.54 56.52 0.37 -5.44 16 7 C -0.53 -13.97 9.68 -34.44 -0.33 -14.30 16 8 H 0.08 2.39 7.95 -52.49 -0.42 1.97 16 9 C 0.02 0.53 3.64 36.01 0.13 0.66 16 10 S 0.03 0.58 20.74 -107.50 -2.23 -1.64 16 11 C 0.38 6.99 7.76 -88.33 -0.69 6.31 16 12 N -0.51 -9.82 9.12 -11.35 -0.10 -9.93 16 13 C 0.11 1.96 7.69 -15.85 -0.12 1.84 16 14 S 0.18 2.42 23.24 -107.50 -2.50 -0.08 16 15 C -0.24 -2.74 11.03 28.83 0.32 -2.42 16 16 C -0.05 -0.72 10.30 -38.75 -0.40 -1.12 16 17 C -0.27 -4.47 6.08 -105.05 -0.64 -5.11 16 18 C 0.57 10.32 7.46 -14.57 -0.11 10.21 16 19 O -0.52 -10.23 17.05 5.00 0.09 -10.14 16 20 N -0.48 -8.31 2.65 -62.76 -0.17 -8.47 16 21 C 0.10 1.62 3.15 -83.62 -0.26 1.36 16 22 C -0.09 -1.19 9.97 -39.40 -0.39 -1.58 16 23 C -0.11 -1.22 10.04 -39.61 -0.40 -1.61 16 24 C -0.10 -1.03 10.04 -39.55 -0.40 -1.43 16 25 C -0.11 -1.22 10.04 -39.61 -0.40 -1.61 16 26 C -0.09 -1.19 9.97 -39.40 -0.39 -1.58 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.06 1.34 7.17 -51.92 -0.37 0.97 16 29 H 0.05 1.21 7.54 -51.92 -0.39 0.82 16 30 H 0.17 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 32 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 344.68 15.07 5.19 5.19 Total: -1.00 -31.08 344.68 -11.10 -42.18 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -3.31 Total: -0.05 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -4.18 Total: -8.07 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: 0.50 Total: -42.92 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -4.67 Total: 15.54 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -4.73 Total: -1.73 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.08 -11.10 -42.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006907546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.393 kcal (2) G-P(sol) polarization free energy of solvation -31.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds