Wall clock time and date at job start Tue Mar 31 2020 05:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48498 * 109.47024 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47637 * 300.00318 * 3 2 1 6 6 H 1.48500 * 109.47218 * 60.00365 * 3 2 1 7 7 C 1.37872 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00245 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99991 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47063 * 179.97438 * 9 7 2 11 11 C 1.35763 * 124.79296 * 264.97411 * 10 9 7 12 12 C 1.36691 * 109.66810 * 179.97438 * 11 10 9 13 13 C 1.46297 * 126.78410 * 180.02562 * 12 11 10 14 14 C 1.36148 * 119.99905 * 344.29803 * 13 12 11 15 15 S 1.77476 * 127.80940 * 7.89782 * 14 13 12 16 16 C 1.77327 * 94.31595 * 179.97438 * 15 14 13 17 17 S 1.71198 * 126.99176 * 180.08249 * 16 15 14 18 18 N 1.34093 * 106.02294 * 0.34049 * 16 15 14 19 19 C 1.32190 * 119.02186 * 359.73746 * 18 16 15 20 20 O 1.21797 * 121.87093 * 179.97438 * 19 18 16 21 21 C 1.47534 * 106.43350 * 0.02562 * 12 11 10 22 22 C 1.39247 * 133.94234 * 179.97438 * 21 12 11 23 23 C 1.37773 * 119.67792 * 180.02562 * 22 21 12 24 24 C 1.38745 * 120.29793 * 359.97438 * 23 22 21 25 25 C 1.37774 * 120.62634 * 0.02562 * 24 23 22 26 26 C 1.37980 * 124.78961 * 84.95674 * 10 9 7 27 27 H 0.97005 * 120.00341 * 359.97438 * 1 2 3 28 28 H 1.09008 * 109.46755 * 60.00043 * 9 7 2 29 29 H 1.09000 * 109.47006 * 300.00459 * 9 7 2 30 30 H 1.07999 * 125.16399 * 359.97438 * 11 10 9 31 31 H 1.08003 * 120.00072 * 164.30673 * 13 12 11 32 32 H 0.96995 * 120.49073 * 179.76501 * 18 16 15 33 33 H 1.08000 * 120.16241 * 359.72381 * 22 21 12 34 34 H 1.08000 * 119.85134 * 179.97438 * 23 22 21 35 35 H 1.07998 * 119.68643 * 180.02562 * 24 23 22 36 36 H 1.08001 * 120.02996 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 2.6314 -4.2643 -1.1130 12 6 3.5134 -5.2467 -0.7589 13 6 4.2014 -6.1724 -1.6590 14 6 3.7647 -6.3281 -2.9391 15 16 2.5210 -5.3874 -3.7864 16 6 2.6716 -6.2995 -5.2996 17 16 1.7907 -6.0481 -6.7459 18 7 3.6117 -7.2299 -5.0790 19 6 4.1956 -7.2833 -3.8942 20 8 5.0551 -8.1071 -3.6374 21 6 3.6345 -5.1892 0.7103 22 6 4.3637 -5.9146 1.6490 23 6 4.2528 -5.6045 2.9867 24 6 3.4199 -4.5746 3.3998 25 6 2.6928 -3.8489 2.4818 26 6 2.7913 -4.1467 1.1263 27 1 -0.4851 0.8401 0.0004 28 1 0.6240 -2.5567 -0.8904 29 1 0.6247 -2.5571 0.8896 30 1 2.3222 -4.0406 -2.1233 31 1 5.0557 -6.7322 -1.3079 32 1 3.8599 -7.8543 -5.7785 33 1 5.0093 -6.7196 1.3303 34 1 4.8167 -6.1656 3.7172 35 1 3.3407 -4.3397 4.4510 36 1 2.0477 -3.0489 2.8140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007155205.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:04 Heat of formation + Delta-G solvation = 73.373278 kcal Electronic energy + Delta-G solvation = -23681.751400 eV Core-core repulsion = 20156.830172 eV Total energy + Delta-G solvation = -3524.921228 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 344.039 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49108 -41.24110 -37.06466 -36.92505 -34.92416 -33.30777 -31.49500 -30.02263 -28.83353 -27.65588 -26.93323 -25.16928 -23.40854 -22.65185 -21.24634 -20.84687 -19.80576 -18.65255 -18.38503 -17.07009 -16.62958 -16.42276 -16.38792 -16.07181 -15.56248 -15.07350 -14.82587 -14.49510 -14.21897 -13.83847 -13.59267 -13.12414 -12.86669 -12.70515 -12.37936 -12.16499 -11.96088 -11.72327 -11.60421 -11.46290 -11.30783 -11.04278 -10.99744 -10.81092 -10.51558 -10.45246 -9.97879 -9.53463 -9.20377 -8.89667 -8.19449 -8.11221 -8.05739 -7.25734 -6.50690 -4.62760 -0.57990 0.49731 0.63767 1.32795 1.42436 1.54487 1.82590 2.43133 2.52952 3.01343 3.05560 3.15208 3.16730 3.25111 3.97872 4.04374 4.10132 4.63366 4.71826 4.84330 4.90053 5.05449 5.18289 5.25681 5.41574 5.66206 5.66364 5.74832 5.84436 5.87634 6.05674 6.15888 6.31641 6.56914 6.61976 6.70719 6.73346 6.98769 7.17620 7.33685 7.43817 7.51157 7.55283 8.43341 9.07323 10.55936 Molecular weight = 344.04amu Principal moments of inertia in cm(-1) A = 0.008893 B = 0.003943 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.902758 B = 7099.558596 C = 9678.348505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.071 3.929 3 Si 0.906 3.094 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.552 4.552 8 H 0.068 0.932 9 C 0.224 3.776 10 N -0.418 5.418 11 C 0.163 3.837 12 C -0.249 4.249 13 C 0.195 3.805 14 C -0.350 4.350 15 S 0.130 5.870 16 C 0.267 3.733 17 S -0.414 6.414 18 N -0.617 5.617 19 C 0.555 3.445 20 O -0.490 6.490 21 C -0.073 4.073 22 C -0.091 4.091 23 C -0.134 4.134 24 C -0.115 4.115 25 C -0.094 4.094 26 C 0.095 3.905 27 H 0.271 0.729 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.171 0.829 31 H 0.157 0.843 32 H 0.427 0.573 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.473 -11.114 1.234 12.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.086 0.914 9 C 0.106 3.894 10 N -0.089 5.089 11 C 0.018 3.982 12 C -0.256 4.256 13 C 0.168 3.832 14 C -0.468 4.468 15 S 0.368 5.632 16 C -0.085 4.085 17 S -0.281 6.281 18 N -0.260 5.260 19 C 0.345 3.655 20 O -0.368 6.368 21 C -0.077 4.077 22 C -0.109 4.109 23 C -0.152 4.152 24 C -0.135 4.135 25 C -0.114 4.114 26 C -0.010 4.010 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.187 0.813 31 H 0.174 0.826 32 H 0.269 0.731 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.202 -9.945 0.966 11.265 hybrid contribution 1.655 -0.379 -0.129 1.703 sum 6.857 -10.324 0.837 12.422 Atomic orbital electron populations 1.69906 1.06121 1.28108 1.47935 1.24925 0.94973 0.99663 0.93815 0.86291 0.80047 0.82250 0.78144 1.19419 1.20352 1.20457 1.21272 0.93802 0.89319 1.54615 0.91364 1.20094 0.86926 0.81668 1.00670 1.45038 1.33921 1.26608 1.03379 1.22395 0.92564 0.91225 0.91969 1.18778 1.09458 1.05440 0.91953 1.21246 0.89782 0.85441 0.86709 1.22339 1.12956 1.10440 1.01112 1.86245 1.41617 1.35431 0.99947 1.28840 0.87183 0.88092 1.04412 1.93065 1.45845 1.74791 1.14358 1.43591 1.34428 1.31539 1.16445 1.16567 0.81922 0.85498 0.81466 1.90948 1.29429 1.37877 1.78541 1.18862 0.99742 0.97646 0.91403 1.20332 0.99196 0.99376 0.92008 1.20877 1.00353 0.98783 0.95235 1.20798 0.97424 0.96317 0.98933 1.20293 1.01129 1.00639 0.89308 1.18315 0.97838 0.95807 0.89063 0.91914 0.92530 0.92688 0.81284 0.82560 0.73085 0.86144 0.86102 0.85788 0.85258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.66 13.29 55.43 0.74 -21.93 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 19.29 29.54 -169.99 -5.02 14.27 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -13.22 9.39 -34.44 -0.32 -13.54 16 8 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.22 4.77 5.71 -5.20 -0.03 4.74 16 10 N -0.42 -7.66 2.73 -115.32 -0.32 -7.98 16 11 C 0.16 2.61 10.20 -16.37 -0.17 2.44 16 12 C -0.25 -3.56 6.20 -103.43 -0.64 -4.20 16 13 C 0.20 2.33 10.03 -37.10 -0.37 1.96 16 14 C -0.35 -4.37 6.32 -38.98 -0.25 -4.62 16 15 S 0.13 1.66 19.24 -107.50 -2.07 -0.40 16 16 C 0.27 3.46 8.05 53.75 0.43 3.89 16 17 S -0.41 -6.22 31.19 -107.50 -3.35 -9.57 16 18 N -0.62 -7.08 5.17 -14.61 -0.08 -7.16 16 19 C 0.56 7.07 7.75 -16.04 -0.12 6.94 16 20 O -0.49 -7.15 17.82 5.10 0.09 -7.05 16 21 C -0.07 -1.10 6.36 -104.92 -0.67 -1.77 16 22 C -0.09 -1.13 10.09 -39.38 -0.40 -1.53 16 23 C -0.13 -1.56 10.03 -39.56 -0.40 -1.96 16 24 C -0.12 -1.46 10.01 -39.56 -0.40 -1.86 16 25 C -0.09 -1.47 9.97 -39.42 -0.39 -1.86 16 26 C 0.09 1.62 6.79 -83.96 -0.57 1.05 16 27 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 28 H 0.06 1.24 8.11 -51.92 -0.42 0.82 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.17 2.53 4.88 -33.23 -0.16 2.36 16 31 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 32 H 0.43 4.05 8.92 -40.82 -0.36 3.68 16 33 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.13 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 349.09 15.07 5.26 5.26 Total: -1.00 -27.27 349.09 -12.16 -39.43 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.03 Total: 3.79 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -4.39 Total: -8.66 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.35 Total: -37.07 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.09 Total: -7.05 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.02 Total: 14.27 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -5.42 Total: -9.98 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -27.27 -12.16 -39.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007155205.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.805 kcal (2) G-P(sol) polarization free energy of solvation -27.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds