Wall clock time and date at job start Tue Mar 31 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35871 * 117.00117 * 2 1 4 4 C 1.38870 * 119.90950 * 180.02562 * 3 2 1 5 5 C 1.37835 * 120.09353 * 179.97438 * 4 3 2 6 6 C 1.39647 * 119.90641 * 0.02562 * 5 4 3 7 7 C 1.47713 * 120.09089 * 179.97438 * 6 5 4 8 8 N 1.31085 * 126.30348 * 359.68758 * 7 6 5 9 9 N 1.28656 * 109.41947 * 179.88938 * 8 7 6 10 10 C 1.31258 * 109.44601 * 0.37911 * 9 8 7 11 11 S 1.76205 * 126.28303 * 179.78916 * 10 9 8 12 12 C 1.81002 * 99.99924 * 359.97438 * 11 10 9 13 13 C 1.52996 * 109.47293 * 179.97438 * 12 11 10 14 14 H 1.09005 * 109.46791 * 54.99870 * 13 12 11 15 15 C 1.47202 * 109.47020 * 295.00101 * 13 12 11 16 16 N 9.63553 * 126.00514 * 163.40706 * 5 1 2 17 17 C 1.52996 * 109.47247 * 174.99970 * 13 12 11 18 18 C 1.50704 * 109.47282 * 185.00047 * 17 13 12 19 19 H 1.08001 * 119.99771 * 0.02562 * 18 17 13 20 20 C 1.37876 * 120.00346 * 179.97438 * 18 17 13 21 21 N 1.31522 * 119.99826 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00139 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46998 * 60.00769 * 22 20 18 24 24 H 1.48504 * 109.46770 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47466 * 300.00239 * 22 20 18 26 26 O 1.34695 * 107.43541 * 359.77099 * 10 9 8 27 27 C 1.39654 * 119.81450 * 359.97438 * 6 5 4 28 28 C 1.37830 * 119.90905 * 359.97438 * 27 6 5 29 29 H 1.08996 * 109.47337 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46780 * 299.99397 * 1 2 3 31 31 H 1.08997 * 109.47580 * 59.99361 * 1 2 3 32 32 H 1.08005 * 119.95161 * 0.26439 * 4 3 2 33 33 H 1.07998 * 120.04490 * 179.97438 * 5 4 3 34 34 H 1.08998 * 109.47255 * 300.00031 * 12 11 10 35 35 H 1.09010 * 109.46953 * 59.99812 * 12 11 10 36 36 H 1.09004 * 109.47313 * 305.00260 * 17 13 12 37 37 H 1.09007 * 109.47178 * 65.00214 * 17 13 12 38 38 H 0.96995 * 119.99845 * 179.97438 * 21 20 18 39 39 H 1.08004 * 120.04406 * 179.97438 * 27 6 5 40 40 H 1.07998 * 119.95331 * 180.02562 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2106 0.0000 4 6 3.4328 1.2811 -0.0005 5 6 4.0625 2.5072 -0.0011 6 6 3.3038 3.6796 -0.0005 7 6 3.9744 4.9957 -0.0005 8 7 5.2680 5.2076 0.0048 9 7 5.4940 6.4741 0.0005 10 6 4.3523 7.1217 0.0006 11 16 4.1461 8.8717 0.0009 12 6 5.8796 9.3924 0.0019 13 6 5.9532 10.9206 0.0017 14 1 5.3813 11.3119 0.8431 15 6 5.3917 11.4386 -1.2566 16 7 4.9595 11.8381 -2.2310 17 6 7.4129 11.3610 0.1283 18 6 7.4760 12.8616 0.2515 19 1 6.5659 13.4430 0.2411 20 6 8.6955 13.4923 0.3787 21 7 9.8037 12.7842 0.3919 22 14 8.7737 15.3524 0.5308 23 1 8.0200 15.7826 1.7359 24 1 10.1906 15.7798 0.6538 25 1 8.1728 15.9735 -0.6768 26 8 3.3672 6.2031 -0.0001 27 6 1.9093 3.6042 0.0000 28 6 1.2875 2.3741 -0.0005 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0188 0.3738 -0.0053 33 1 5.1411 2.5610 -0.0011 34 1 6.3750 9.0046 0.8920 35 1 6.3759 9.0049 -0.8880 36 1 7.8546 10.9047 1.0142 37 1 7.9656 11.0456 -0.7568 38 1 10.6616 13.2279 0.4810 39 1 1.3189 4.5086 0.0008 40 1 0.2092 2.3150 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007200903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:01 Heat of formation + Delta-G solvation = 49.518226 kcal Electronic energy + Delta-G solvation = -24848.467773 eV Core-core repulsion = 20950.166425 eV Total energy + Delta-G solvation = -3898.301348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.12514 -40.65055 -38.06746 -36.91305 -36.29469 -34.09179 -32.68337 -32.33311 -31.75477 -29.79458 -28.05727 -27.78931 -24.94166 -24.21248 -23.89534 -22.78815 -21.98668 -21.84061 -18.99798 -18.64913 -17.56125 -17.40931 -16.89613 -16.76876 -16.50269 -16.31375 -15.95103 -15.09130 -14.98235 -14.39030 -14.24964 -14.10160 -13.96522 -13.42217 -13.18872 -13.08000 -12.95913 -12.58996 -12.51916 -12.30041 -12.09457 -12.04647 -11.91153 -11.60318 -11.57126 -11.38730 -11.20681 -11.00448 -10.76101 -10.65193 -10.56679 -10.39037 -9.69340 -9.62376 -9.37481 -8.83057 -8.51948 -7.83845 -6.16052 -4.20982 0.13790 0.44136 0.78477 1.28047 1.84817 2.24281 2.47037 2.67263 3.24612 3.27611 3.32768 3.34865 3.36716 3.45011 3.85432 4.20130 4.31277 4.34997 4.47520 4.51495 4.59387 4.67256 4.74494 4.83061 4.91628 5.02224 5.04446 5.11340 5.12016 5.21946 5.26927 5.44897 5.64241 5.72464 5.75013 5.90614 6.06213 6.07618 6.22277 6.74808 7.31021 7.38286 7.76809 8.02743 8.10607 8.21358 8.82408 9.45122 10.94387 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.034773 B = 0.001673 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.022764 B =16733.767618 C =17268.900957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.313 6.313 3 C 0.150 3.850 4 C -0.152 4.152 5 C -0.026 4.026 6 C -0.058 4.058 7 C 0.206 3.794 8 N -0.265 5.265 9 N -0.281 5.281 10 C 0.142 3.858 11 S 0.055 5.945 12 C -0.104 4.104 13 C 0.025 3.975 14 H 0.116 0.884 15 C 0.230 3.770 16 N -0.451 5.451 17 C 0.039 3.961 18 C -0.533 4.533 19 H 0.058 0.942 20 C 0.065 3.935 21 N -0.888 5.888 22 Si 0.894 3.106 23 H -0.274 1.274 24 H -0.286 1.286 25 H -0.276 1.276 26 O -0.206 6.206 27 C -0.042 4.042 28 C -0.210 4.210 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.046 0.954 37 H 0.032 0.968 38 H 0.265 0.735 39 H 0.136 0.864 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.414 -25.409 2.397 31.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.225 6.225 3 C 0.104 3.896 4 C -0.170 4.170 5 C -0.046 4.046 6 C -0.061 4.061 7 C -0.006 4.006 8 N -0.113 5.113 9 N -0.133 5.133 10 C -0.174 4.174 11 S 0.287 5.713 12 C -0.253 4.253 13 C 0.001 3.999 14 H 0.134 0.866 15 C -0.088 4.088 16 N -0.128 5.128 17 C -0.001 4.001 18 C -0.571 4.571 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.526 5.526 22 Si 0.721 3.279 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.202 1.202 26 O -0.087 6.087 27 C -0.062 4.062 28 C -0.229 4.229 29 H 0.121 0.879 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.074 0.926 39 H 0.154 0.846 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -18.507 -24.517 0.938 30.732 hybrid contribution -0.111 0.556 0.430 0.712 sum -18.618 -23.961 1.368 30.375 Atomic orbital electron populations 1.23153 0.77824 1.04405 1.01738 1.86098 1.21884 1.26665 1.87893 1.19289 0.92465 0.84309 0.93581 1.20379 0.91274 0.98557 1.06804 1.21028 1.00915 0.89329 0.93303 1.17094 0.92546 0.85697 1.10732 1.25349 0.88057 0.85703 1.01493 1.74457 1.12066 1.08316 1.16411 1.74978 1.21453 0.97808 1.19047 1.30104 0.84163 0.99934 1.03183 1.86205 1.13694 0.81053 1.90306 1.24128 0.92608 0.99144 1.09459 1.19060 1.03080 0.88656 0.89099 0.86640 1.29073 0.92137 0.93022 0.94565 1.81146 1.10985 1.09012 1.11616 1.19244 0.84292 0.97125 0.99460 1.21036 0.92940 0.91145 1.51974 0.92344 1.24940 0.95607 0.98503 0.94719 1.69926 0.97779 1.35743 1.49107 0.86614 0.77123 0.85287 0.78836 1.19965 1.21124 1.20200 1.84998 1.37662 1.14993 1.71070 1.21059 0.92676 0.98178 0.94264 1.21152 1.00579 0.91587 1.09550 0.87886 0.92248 0.92264 0.83872 0.83326 0.85902 0.87330 0.93624 0.94972 0.92557 0.84610 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.13 10.49 -19.33 -0.20 -2.33 16 3 C 0.15 1.12 6.69 -39.11 -0.26 0.86 16 4 C -0.15 -1.13 9.97 -39.50 -0.39 -1.53 16 5 C -0.03 -0.23 9.69 -39.20 -0.38 -0.61 16 6 C -0.06 -0.60 5.87 -104.97 -0.62 -1.21 16 7 C 0.21 2.72 7.98 -14.00 -0.11 2.61 16 8 N -0.26 -4.05 11.89 32.08 0.38 -3.67 16 9 N -0.28 -4.54 11.62 30.32 0.35 -4.19 16 10 C 0.14 2.10 8.53 52.52 0.45 2.55 16 11 S 0.06 0.75 21.71 -107.50 -2.33 -1.59 16 12 C -0.10 -1.50 4.64 37.16 0.17 -1.33 16 13 C 0.03 0.43 2.21 -93.41 -0.21 0.22 16 14 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 15 C 0.23 4.44 13.31 -20.68 -0.28 4.16 16 16 N -0.45 -9.53 18.55 42.25 0.78 -8.75 16 17 C 0.04 0.85 4.42 -27.88 -0.12 0.73 16 18 C -0.53 -13.57 8.60 -34.44 -0.30 -13.86 16 19 H 0.06 1.47 7.59 -52.49 -0.40 1.07 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -24.74 13.29 55.43 0.74 -24.01 16 22 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 O -0.21 -2.85 10.69 2.24 0.02 -2.83 16 27 C -0.04 -0.34 9.72 -39.20 -0.38 -0.73 16 28 C -0.21 -1.42 9.02 -39.49 -0.36 -1.77 16 29 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.14 7.65 -51.92 -0.40 -0.26 16 31 H 0.06 0.14 7.65 -51.93 -0.40 -0.26 16 32 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 33 H 0.15 1.22 7.86 -52.49 -0.41 0.81 16 34 H 0.12 1.64 8.14 -51.92 -0.42 1.21 16 35 H 0.11 1.61 8.14 -51.91 -0.42 1.19 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.14 0.98 7.93 -52.48 -0.42 0.56 16 40 H 0.14 0.59 6.28 -52.49 -0.33 0.26 16 LS Contribution 375.19 15.07 5.65 5.65 Total: -1.00 -31.60 375.19 -5.96 -37.56 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -4.44 Total: -4.37 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: -1.89 Total: -7.19 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 2.25 Total: -40.61 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.18 Total: -5.16 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.33 Total: -1.59 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.60 -5.96 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007200903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.076 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds