Wall clock time and date at job start Tue Mar 31 2020 05:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31563 * 1 3 3 Si 1.86803 * 119.99929 * 2 1 4 4 H 1.48508 * 109.46974 * 270.00121 * 3 2 1 5 5 H 1.48499 * 109.47213 * 30.00139 * 3 2 1 6 6 H 1.48497 * 109.47080 * 150.00488 * 3 2 1 7 7 C 1.38643 * 119.99681 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99582 * 180.02562 * 7 2 1 9 9 O 1.34800 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.35651 * 116.99792 * 185.05957 * 9 7 2 11 11 C 1.39089 * 119.91422 * 354.44764 * 10 9 7 12 12 C 1.37712 * 120.08929 * 179.97438 * 11 10 9 13 13 C 1.39819 * 119.91067 * 0.02562 * 12 11 10 14 14 C 1.47342 * 120.08782 * 179.97438 * 13 12 11 15 15 N 1.29855 * 120.00040 * 179.97438 * 14 13 12 16 16 N 1.40107 * 120.00072 * 179.97438 * 15 14 13 17 17 C 1.34773 * 119.99901 * 180.02562 * 16 15 14 18 18 O 1.21606 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.47715 * 119.99834 * 180.02562 * 17 16 15 20 20 C 1.39655 * 120.15688 * 359.97438 * 19 17 16 21 21 C 1.37894 * 119.86467 * 180.02562 * 20 19 17 22 22 C 1.38424 * 120.18282 * 359.97438 * 21 20 19 23 23 C 1.38284 * 120.32140 * 359.97438 * 22 21 20 24 24 C 1.38142 * 120.13412 * 0.02562 * 23 22 21 25 25 Cl 1.73602 * 120.09229 * 179.97438 * 24 23 22 26 26 C 1.39820 * 119.82524 * 0.24400 * 13 12 11 27 27 C 1.37717 * 119.91199 * 359.47600 * 26 13 12 28 28 H 0.96999 * 119.99869 * 0.02562 * 1 2 3 29 29 H 1.07998 * 119.95432 * 359.97438 * 11 10 9 30 30 H 1.07996 * 120.04248 * 180.02562 * 12 11 10 31 31 H 1.08004 * 119.99746 * 359.97438 * 14 13 12 32 32 H 0.97003 * 119.99304 * 359.97438 * 16 15 14 33 33 H 1.08001 * 120.06857 * 359.97438 * 20 19 17 34 34 H 1.08001 * 119.90725 * 180.02562 * 21 20 19 35 35 H 1.07997 * 119.83803 * 180.02562 * 22 21 20 36 36 H 1.07995 * 119.93025 * 179.73876 * 23 22 21 37 37 H 1.08005 * 120.04262 * 179.72679 * 26 13 12 38 38 H 1.07992 * 119.95654 * 180.29489 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4002 5 1 1.4471 2.6527 0.7001 6 1 3.5472 1.4402 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3347 -2.3681 -0.0005 10 6 2.0695 -3.5034 0.1055 11 6 3.4586 -3.4345 0.0914 12 6 4.2081 -4.5848 0.1993 13 6 3.5708 -5.8231 0.3227 14 6 4.3689 -7.0563 0.4379 15 7 3.7752 -8.2055 0.5530 16 7 4.5341 -9.3782 0.6620 17 6 3.9180 -10.5709 0.7809 18 8 2.7034 -10.6293 0.7941 19 6 4.7180 -11.8073 0.8964 20 6 6.1131 -11.7440 0.8822 21 6 6.8540 -12.9020 0.9899 22 6 6.2189 -14.1258 1.1125 23 6 4.8380 -14.1971 1.1284 24 6 4.0827 -13.0454 1.0214 25 17 2.3492 -13.1363 1.0409 26 6 2.1742 -5.8887 0.3309 27 6 1.4318 -4.7333 0.2283 28 1 -0.4850 0.8400 -0.0004 29 1 3.9501 -2.4776 -0.0044 30 1 5.2866 -4.5303 0.1886 31 1 5.4476 -7.0045 0.4267 32 1 5.5029 -9.3316 0.6511 33 1 6.6106 -10.7903 0.7863 34 1 7.9329 -12.8538 0.9794 35 1 6.8047 -15.0291 1.1968 36 1 4.3490 -15.1557 1.2201 37 1 1.6783 -6.8439 0.4216 38 1 0.3531 -4.7827 0.2393 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000008063018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:42 Heat of formation + Delta-G solvation = 38.636304 kcal Electronic energy + Delta-G solvation = -24572.202618 eV Core-core repulsion = 20600.978505 eV Total energy + Delta-G solvation = -3971.224114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.44414 -39.13730 -38.60530 -37.08904 -36.65324 -35.79321 -32.95334 -32.37680 -31.22469 -31.20409 -30.32781 -28.47716 -25.65526 -24.58217 -23.30978 -22.60122 -22.00348 -20.79413 -20.29501 -18.61684 -18.09472 -17.24312 -16.87092 -16.61580 -15.81684 -15.42857 -15.29437 -14.86277 -14.62233 -14.54845 -14.34494 -14.05714 -13.79670 -13.65679 -13.53936 -12.83138 -12.51077 -12.46033 -12.42099 -12.02596 -11.82623 -11.79654 -11.41151 -11.33874 -11.18812 -10.94668 -10.78966 -10.52116 -10.02933 -9.70262 -9.63597 -9.44433 -9.27631 -9.18516 -8.75055 -8.29311 -7.12392 -6.58749 -4.15140 0.23163 0.63299 1.39434 1.84089 2.20792 2.42958 2.51270 2.93439 3.06640 3.10021 3.12496 3.41926 3.86352 4.11701 4.13539 4.36495 4.55679 4.68171 4.69662 4.85205 4.96159 4.99044 5.09317 5.17420 5.21019 5.51924 5.56050 5.59739 5.75047 5.76808 5.93772 6.11626 6.14267 6.33950 6.61981 6.80055 6.95323 7.01241 7.18090 7.19804 7.31944 7.60935 7.70129 7.86194 8.42544 8.85857 9.53799 10.58080 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.030529 B = 0.001681 C = 0.001595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.926551 B =16654.043729 C =17552.609120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.041 3.959 3 Si 0.944 3.056 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.165 6.165 10 C 0.170 3.830 11 C -0.242 4.242 12 C -0.034 4.034 13 C -0.174 4.174 14 C 0.151 3.849 15 N -0.263 5.263 16 N -0.582 5.582 17 C 0.566 3.434 18 O -0.480 6.480 19 C -0.123 4.123 20 C -0.077 4.077 21 C -0.124 4.124 22 C -0.083 4.083 23 C -0.120 4.120 24 C 0.015 3.985 25 Cl -0.026 7.026 26 C -0.024 4.024 27 C -0.201 4.201 28 H 0.273 0.727 29 H 0.132 0.868 30 H 0.113 0.887 31 H 0.107 0.893 32 H 0.375 0.625 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.126 0.874 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.611 -24.299 1.975 29.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.165 4.165 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.066 6.066 10 C 0.113 3.887 11 C -0.261 4.261 12 C -0.054 4.054 13 C -0.178 4.178 14 C -0.056 4.056 15 N -0.069 5.069 16 N -0.324 5.324 17 C 0.352 3.648 18 O -0.351 6.351 19 C -0.128 4.128 20 C -0.096 4.096 21 C -0.142 4.142 22 C -0.101 4.101 23 C -0.139 4.139 24 C -0.013 4.013 25 Cl 0.004 6.996 26 C -0.044 4.044 27 C -0.220 4.220 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.131 0.869 31 H 0.124 0.876 32 H 0.214 0.786 33 H 0.151 0.849 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.159 0.841 37 H 0.144 0.856 38 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 14.294 -24.735 2.033 28.641 hybrid contribution 1.907 1.126 -0.051 2.215 sum 16.201 -23.609 1.982 28.702 Atomic orbital electron populations 1.70042 1.06079 1.28111 1.44429 1.25375 0.95895 0.99095 0.96168 0.85659 0.78951 0.79697 0.78844 1.19722 1.20127 1.19026 1.21428 0.92029 0.80637 1.52787 0.88612 1.83945 1.34850 1.11733 1.76051 1.19601 0.90340 0.87900 0.90867 1.21038 0.93630 0.98912 1.12565 1.20773 0.98352 0.91028 0.95291 1.17768 0.92717 0.89704 1.17624 1.24454 0.97015 0.90893 0.93281 1.75168 1.21995 0.92185 1.17536 1.46781 1.07592 1.04601 1.73469 1.17734 0.87759 0.81457 0.77820 1.90903 1.12789 1.85741 1.45658 1.19735 0.93766 0.92648 1.06700 1.21330 0.91756 0.99473 0.97037 1.21210 1.00695 0.92049 1.00243 1.21362 0.93780 0.98486 0.96516 1.21132 0.93959 0.97422 1.01376 1.21081 0.87142 0.93397 0.99701 1.98445 1.06908 1.98350 1.95899 1.20922 0.92506 0.97369 0.93648 1.20207 0.99957 0.90043 1.11835 0.91696 0.85059 0.86905 0.87621 0.78638 0.84891 0.84596 0.84481 0.84098 0.85618 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.21 13.67 55.48 0.76 -23.45 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.59 29.55 -169.99 -5.02 14.57 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.39 -10.48 9.48 30.88 0.29 -10.19 16 8 H 0.10 2.32 5.19 -52.48 -0.27 2.05 16 9 O -0.17 -4.54 9.75 0.44 0.00 -4.54 16 10 C 0.17 3.95 6.65 -38.95 -0.26 3.69 16 11 C -0.24 -4.89 9.15 -39.46 -0.36 -5.25 16 12 C -0.03 -0.56 9.78 -39.18 -0.38 -0.95 16 13 C -0.17 -2.95 5.87 -105.01 -0.62 -3.57 16 14 C 0.15 2.13 10.75 -14.68 -0.16 1.97 16 15 N -0.26 -4.16 10.15 32.14 0.33 -3.84 16 16 N -0.58 -7.40 6.21 30.50 0.19 -7.21 16 17 C 0.57 7.93 7.88 -12.39 -0.10 7.84 16 18 O -0.48 -8.59 14.31 5.27 0.08 -8.52 16 19 C -0.12 -1.28 5.88 -104.94 -0.62 -1.90 16 20 C -0.08 -0.53 9.54 -39.18 -0.37 -0.90 16 21 C -0.12 -0.62 10.03 -39.64 -0.40 -1.02 16 22 C -0.08 -0.42 10.04 -39.50 -0.40 -0.81 16 23 C -0.12 -0.84 9.82 -39.60 -0.39 -1.23 16 24 C 0.01 0.15 6.35 -39.06 -0.25 -0.10 16 25 Cl -0.03 -0.31 26.02 -51.86 -1.35 -1.66 16 26 C -0.02 -0.46 9.57 -39.18 -0.37 -0.83 16 27 C -0.20 -4.24 9.97 -39.46 -0.39 -4.64 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.13 2.60 5.62 -52.49 -0.29 2.31 16 30 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 31 H 0.11 1.07 8.02 -52.48 -0.42 0.65 16 32 H 0.38 3.20 6.69 -182.59 -1.22 1.98 16 33 H 0.13 0.58 6.41 -52.49 -0.34 0.24 16 34 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 35 H 0.14 0.30 8.06 -52.49 -0.42 -0.12 16 36 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 37 H 0.13 2.32 7.55 -52.48 -0.40 1.93 16 38 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -33.62 355.30 -8.72 -42.35 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -4.19 Total: 3.85 kcal Atomic # 6 Polarization: -12.04 SS G_CDS: -4.87 Total: -16.91 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 1.27 Total: -34.50 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.08 Total: -13.05 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.35 Total: -1.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.62 -8.72 -42.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000008063018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.983 kcal (2) G-P(sol) polarization free energy of solvation -33.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds