Wall clock time and date at job start Tue Mar 31 2020 06:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31437 * 1 3 3 Si 1.86808 * 119.99581 * 2 1 4 4 H 1.48504 * 109.46882 * 269.99838 * 3 2 1 5 5 H 1.48504 * 109.47127 * 29.99949 * 3 2 1 6 6 H 1.48502 * 109.46873 * 150.00014 * 3 2 1 7 7 C 1.38778 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00605 * 0.02562 * 7 2 1 9 9 O 1.34864 * 119.99807 * 180.02562 * 7 2 1 10 10 C 1.34900 * 116.99996 * 179.97438 * 9 7 2 11 11 O 1.21669 * 119.99645 * 359.97438 * 10 9 7 12 12 C 1.46330 * 120.00189 * 179.97438 * 10 9 7 13 13 S 1.75839 * 125.46512 * 5.95983 * 12 10 9 14 14 C 1.70606 * 91.56730 * 179.97438 * 13 12 10 15 15 C 1.33884 * 110.97470 * 359.75240 * 14 13 12 16 16 C 1.36817 * 125.46811 * 185.93363 * 12 10 9 17 17 S 1.76206 * 123.35844 * 359.97438 * 16 12 10 18 18 O 1.42103 * 106.40187 * 52.81597 * 17 16 12 19 19 O 1.42099 * 106.40138 * 279.89264 * 17 16 12 20 20 N 1.65604 * 107.21534 * 166.35569 * 17 16 12 21 21 C 1.46927 * 120.62837 * 275.59394 * 20 17 16 22 22 C 1.53620 * 108.54253 * 126.37042 * 21 20 17 23 23 C 1.53036 * 109.24322 * 54.85707 * 22 21 20 24 24 C 1.53041 * 109.53454 * 298.51002 * 23 22 21 25 25 C 1.46926 * 120.63342 * 95.87498 * 20 17 16 26 26 H 0.97003 * 120.00231 * 0.02562 * 1 2 3 27 27 H 1.08003 * 124.51305 * 179.97438 * 14 13 12 28 28 H 1.07997 * 122.44269 * 180.25504 * 15 14 13 29 29 H 1.09001 * 109.58722 * 246.20446 * 21 20 17 30 30 H 1.09002 * 109.58757 * 6.62572 * 21 20 17 31 31 H 1.08993 * 109.63690 * 294.85807 * 22 21 20 32 32 H 1.09010 * 109.45540 * 174.73873 * 22 21 20 33 33 H 1.08996 * 109.45974 * 178.48737 * 23 22 21 34 34 H 1.09005 * 109.45894 * 58.52913 * 23 22 21 35 35 H 1.08997 * 109.49503 * 301.41246 * 24 23 22 36 36 H 1.09008 * 109.49357 * 181.31595 * 24 23 22 37 37 H 1.08998 * 109.58214 * 353.37285 * 25 20 17 38 38 H 1.09002 * 109.58475 * 113.79135 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6179 0.0000 4 1 2.4958 2.0465 -1.4001 5 1 1.4456 2.6528 0.7000 6 1 3.5459 1.4403 0.7001 7 6 2.0083 -1.2018 0.0005 8 1 1.4685 -2.1371 0.0005 9 8 3.3569 -1.2017 0.0011 10 6 3.9695 -2.4036 0.0021 11 8 3.3068 -3.4241 0.0030 12 6 5.4308 -2.4802 0.0022 13 16 6.5241 -1.1109 0.1496 14 6 7.8887 -2.1302 0.0525 15 6 7.5218 -3.4113 -0.0763 16 6 6.1656 -3.6286 -0.1120 17 16 5.4445 -5.2276 -0.2798 18 8 4.5341 -5.1450 -1.3677 19 8 5.0599 -5.6334 1.0265 20 7 6.6484 -6.2607 -0.7549 21 6 7.0085 -6.3886 -2.1737 22 6 8.5195 -6.1519 -2.3175 23 6 9.2706 -7.1099 -1.3900 24 6 8.8758 -6.8311 0.0621 25 6 7.3727 -7.0714 0.2335 26 1 -0.4850 0.8400 -0.0004 27 1 8.9123 -1.7880 0.0933 28 1 8.2396 -4.2149 -0.1499 29 1 6.7574 -7.3892 -2.5256 30 1 6.4637 -5.6464 -2.7573 31 1 8.7565 -5.1230 -2.0470 32 1 8.8191 -6.3350 -3.3495 33 1 10.3441 -6.9635 -1.5090 34 1 9.0140 -8.1381 -1.6451 35 1 9.1094 -5.7958 0.3102 36 1 9.4286 -7.4980 0.7238 37 1 7.0682 -6.7798 1.2387 38 1 7.1506 -8.1266 0.0739 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000010569259.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:09 Heat of formation + Delta-G solvation = -110.070955 kcal Electronic energy + Delta-G solvation = -26767.289798 eV Core-core repulsion = 22829.386249 eV Total energy + Delta-G solvation = -3937.903549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 345.058 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.46989 -38.67039 -37.61040 -36.76043 -35.59047 -35.20408 -32.60418 -32.58160 -31.26528 -30.08828 -26.48268 -24.99257 -24.47739 -23.48820 -21.65422 -20.63126 -20.12649 -18.64363 -18.38961 -18.11657 -17.07400 -16.41288 -15.94633 -15.82886 -15.08279 -14.85012 -14.78548 -14.50527 -14.44443 -14.31706 -13.88009 -13.82370 -13.61182 -13.07264 -12.76713 -12.60934 -12.53694 -12.31762 -11.79497 -11.60438 -11.60221 -11.47166 -11.39352 -11.34958 -11.10430 -10.82108 -10.73259 -10.68060 -10.57567 -10.46243 -9.92686 -9.53983 -9.13283 -9.06971 -8.89738 -8.68177 -6.62067 -4.27305 0.32324 0.59022 1.57491 1.98163 2.11916 3.06845 3.09177 3.14272 3.22916 3.50695 3.75948 4.06175 4.09518 4.44934 4.56529 4.59578 4.78477 4.85588 4.91824 5.04876 5.07625 5.12116 5.17490 5.30127 5.49999 5.52358 5.58024 5.60352 5.73307 5.78275 5.79455 5.84841 6.05585 6.09070 6.15385 6.19491 6.54800 7.45681 7.79519 8.37385 8.72158 9.35034 10.43781 Molecular weight = 345.06amu Principal moments of inertia in cm(-1) A = 0.020117 B = 0.003956 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.537023 B = 7075.933046 C = 7886.919301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.067 3.933 3 Si 0.902 3.098 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.358 4.358 8 H 0.121 0.879 9 O -0.228 6.228 10 C 0.439 3.561 11 O -0.508 6.508 12 C -0.089 4.089 13 S 0.272 5.728 14 C -0.274 4.274 15 C -0.080 4.080 16 C -0.650 4.650 17 S 2.715 3.285 18 O -0.925 6.925 19 O -0.945 6.945 20 N -1.004 6.004 21 C 0.119 3.881 22 C -0.139 4.139 23 C -0.117 4.117 24 C -0.139 4.139 25 C 0.115 3.885 26 H 0.286 0.714 27 H 0.171 0.829 28 H 0.149 0.851 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.095 0.905 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.542 -8.382 -2.330 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.179 1.179 7 C -0.434 4.434 8 H 0.138 0.862 9 O -0.136 6.136 10 C 0.285 3.715 11 O -0.405 6.405 12 C -0.211 4.211 13 S 0.539 5.461 14 C -0.412 4.412 15 C -0.109 4.109 16 C -0.748 4.748 17 S 2.800 3.200 18 O -0.915 6.915 19 O -0.936 6.936 20 N -0.843 5.843 21 C -0.006 4.006 22 C -0.178 4.178 23 C -0.154 4.154 24 C -0.177 4.177 25 C -0.010 4.010 26 H 0.097 0.903 27 H 0.189 0.811 28 H 0.167 0.833 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.154 -7.085 -2.010 22.399 hybrid contribution 1.165 -0.193 -0.180 1.194 sum 22.318 -7.278 -2.190 23.577 Atomic orbital electron populations 1.69591 1.05816 1.29214 1.43801 1.24636 0.95123 0.99000 0.95271 0.86255 0.80610 0.81067 0.79520 1.19210 1.20071 1.17910 1.20946 0.75544 0.97710 1.49234 0.86182 1.83520 1.24621 1.30210 1.75220 1.19021 0.85498 0.83796 0.83163 1.90829 1.64609 1.35040 1.49985 1.23715 0.95794 0.96731 1.04903 1.83336 0.92622 1.07622 1.62490 1.25381 1.04846 0.98495 1.12468 1.19484 0.92673 0.97415 1.01334 1.30547 1.02952 1.22258 1.19092 1.01804 0.71843 0.72090 0.74228 1.93600 1.57170 1.85925 1.54824 1.93546 1.79298 1.81115 1.39592 1.58084 1.56524 1.56017 1.13692 1.21529 0.95492 1.03246 0.80333 1.22053 0.95209 1.00386 1.00137 1.21472 0.99619 0.99724 0.94631 1.21998 0.96027 1.02364 0.97351 1.21491 0.91390 0.95910 0.92251 0.90320 0.81148 0.83340 0.90716 0.89098 0.91286 0.90706 0.91859 0.91637 0.91467 0.90609 0.88704 0.90766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.26 13.96 55.48 0.77 -23.48 16 2 C 0.07 1.87 5.50 -17.52 -0.10 1.77 16 3 Si 0.90 20.53 28.62 -169.99 -4.86 15.67 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.36 -10.65 10.11 30.93 0.31 -10.34 16 8 H 0.12 3.93 7.09 -52.49 -0.37 3.55 16 9 O -0.23 -6.17 8.43 -22.13 -0.19 -6.36 16 10 C 0.44 11.47 7.82 33.98 0.27 11.73 16 11 O -0.51 -14.79 12.90 -26.68 -0.34 -15.13 16 12 C -0.09 -1.85 6.45 -36.84 -0.24 -2.09 16 13 S 0.27 4.26 22.93 -107.50 -2.47 1.79 16 14 C -0.27 -3.37 10.92 29.20 0.32 -3.05 16 15 C -0.08 -1.08 9.74 -41.42 -0.40 -1.48 16 16 C -0.65 -11.78 5.87 -40.40 -0.24 -12.02 16 17 S 2.71 51.48 4.35 -107.50 -0.47 51.01 16 18 O -0.93 -20.97 15.14 -66.10 -1.00 -21.97 16 19 O -0.95 -20.44 16.55 -57.23 -0.95 -21.38 16 20 N -1.00 -12.76 2.75 -113.28 -0.31 -13.08 16 21 C 0.12 1.23 6.38 -3.49 -0.02 1.21 16 22 C -0.14 -1.05 6.10 -26.39 -0.16 -1.21 16 23 C -0.12 -0.76 5.88 -26.69 -0.16 -0.91 16 24 C -0.14 -1.00 6.00 -26.61 -0.16 -1.16 16 25 C 0.11 1.14 6.40 -3.71 -0.02 1.12 16 26 H 0.29 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.15 1.50 4.84 -52.49 -0.25 1.25 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.03 7.29 -51.93 -0.38 0.65 16 31 H 0.07 0.53 7.26 -51.93 -0.38 0.15 16 32 H 0.07 0.46 8.14 -51.92 -0.42 0.03 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.48 6.16 -51.93 -0.32 0.16 16 36 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.09 1.03 6.97 -51.93 -0.36 0.66 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -36.22 338.95 -9.46 -45.69 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -4.16 Total: -1.43 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.60 Total: -16.43 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.46 Total: -36.56 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -2.48 Total: -64.85 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.86 Total: 15.67 kcal Atomic # 16 Polarization: 55.74 SS G_CDS: -2.93 Total: 52.80 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.22 -9.46 -45.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010569259.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.383 kcal (2) G-P(sol) polarization free energy of solvation -36.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds