Wall clock time and date at job start Tue Mar 31 2020 05:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46507 * 119.99961 * 2 1 4 4 C 1.50696 * 109.46972 * 270.00043 * 3 2 1 5 5 H 1.07998 * 120.00384 * 359.97438 * 4 3 2 6 6 C 1.37884 * 119.99468 * 179.97438 * 4 3 2 7 7 N 1.31513 * 119.99447 * 179.97438 * 6 4 3 8 8 Si 1.86797 * 120.00251 * 0.02562 * 6 4 3 9 9 H 1.48493 * 109.47259 * 89.99977 * 8 6 4 10 10 H 1.48497 * 109.46822 * 209.99854 * 8 6 4 11 11 H 1.48499 * 109.46888 * 329.99828 * 8 6 4 12 12 C 1.34780 * 120.00501 * 180.02562 * 2 1 3 13 13 O 1.21272 * 120.00493 * 179.97438 * 12 2 1 14 14 C 1.50704 * 119.99538 * 0.02562 * 12 2 1 15 15 O 1.45203 * 109.47073 * 179.97438 * 14 12 2 16 16 C 1.34715 * 116.99675 * 179.97438 * 15 14 12 17 17 O 1.21459 * 120.00439 * 0.02562 * 16 15 14 18 18 C 1.47821 * 119.99484 * 179.97438 * 16 15 14 19 19 C 1.38831 * 121.36353 * 354.35450 * 18 16 15 20 20 C 1.39961 * 119.43587 * 180.02562 * 19 18 16 21 21 O 1.35600 * 118.80481 * 179.97438 * 20 19 18 22 22 N 1.31229 * 122.39114 * 0.27330 * 20 19 18 23 23 C 1.33582 * 122.34889 * 359.43988 * 22 20 19 24 24 C 1.40634 * 121.09133 * 180.27825 * 23 22 20 25 25 C 1.36128 * 119.72278 * 180.26775 * 24 23 22 26 26 C 1.39299 * 121.07899 * 0.02562 * 25 24 23 27 27 C 1.36337 * 120.80826 * 359.97438 * 26 25 24 28 28 C 1.39924 * 119.58852 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47136 * 269.99593 * 1 2 3 30 30 H 1.08996 * 109.46960 * 30.00083 * 1 2 3 31 31 H 1.08999 * 109.47110 * 149.99773 * 1 2 3 32 32 H 1.08993 * 109.46803 * 30.00023 * 3 2 1 33 33 H 1.09003 * 109.47160 * 150.00017 * 3 2 1 34 34 H 0.97001 * 119.99877 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47187 * 60.00096 * 14 12 2 36 36 H 1.08999 * 109.46989 * 299.99954 * 14 12 2 37 37 H 1.07996 * 120.28140 * 0.04123 * 19 18 16 38 38 H 0.96696 * 113.99549 * 89.99514 * 21 20 19 39 39 H 1.07998 * 120.14121 * 0.24241 * 24 23 22 40 40 H 1.07999 * 119.45789 * 180.02562 * 25 24 23 41 41 H 1.08001 * 119.59489 * 179.97438 * 26 25 24 42 42 H 1.08004 * 120.20534 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8781 -1.6726 7 7 3.3456 3.2574 -2.9126 8 14 3.7329 3.9293 -0.2528 9 1 5.1064 3.5083 0.1230 10 1 3.7477 5.3560 -0.6643 11 1 2.8270 3.7592 0.9115 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0017 15 8 2.3290 -3.5760 -0.0027 16 6 1.8141 -4.8208 -0.0033 17 8 0.6100 -4.9800 -0.0034 18 6 2.7146 -5.9930 -0.0048 19 6 4.0902 -5.8473 -0.1224 20 6 4.9052 -6.9851 -0.1198 21 8 6.2470 -6.8280 -0.2359 22 7 4.4175 -8.1989 -0.0149 23 6 3.1084 -8.4351 0.1080 24 6 2.6149 -9.7468 0.2245 25 6 1.2750 -9.9558 0.3428 26 6 0.3788 -8.8894 0.3503 27 6 0.8213 -7.6046 0.2395 28 6 2.1925 -7.3544 0.1162 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5139 32 1 1.6084 2.0283 0.5138 33 1 3.1499 1.1385 0.5138 34 1 3.8224 4.0833 -3.0898 35 1 0.7591 -2.5295 -0.8920 36 1 0.7585 -2.5306 0.8880 37 1 4.5278 -4.8643 -0.2148 38 1 6.7061 -6.7303 0.6096 39 1 3.2961 -10.5849 0.2196 40 1 0.9007 -10.9649 0.4324 41 1 -0.6795 -9.0828 0.4451 42 1 0.1179 -6.7851 0.2468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000011459519.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:25 Heat of formation + Delta-G solvation = -78.556352 kcal Electronic energy + Delta-G solvation = -28684.923653 eV Core-core repulsion = 24403.741614 eV Total energy + Delta-G solvation = -4281.182039 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47808 -40.42595 -39.04963 -38.66613 -36.65794 -36.15284 -35.06242 -33.84548 -32.64430 -30.76731 -30.12939 -29.71326 -27.81581 -26.07006 -25.43145 -23.91327 -23.29481 -22.34494 -21.37885 -19.54580 -18.94196 -18.41216 -17.88622 -17.61332 -17.13209 -16.83272 -16.65378 -16.26787 -15.76231 -15.39123 -15.23419 -15.10649 -14.89482 -14.43551 -14.19048 -13.94686 -13.59151 -13.41252 -13.14728 -12.64213 -12.46153 -12.39808 -12.38762 -12.13984 -12.04197 -11.83811 -11.77621 -11.57849 -11.09056 -10.98794 -10.88882 -10.86740 -10.59320 -10.21829 -9.84577 -9.62361 -9.23358 -9.12591 -8.66547 -8.64869 -7.89231 -6.14389 -4.14363 -0.44439 0.33595 1.19736 2.02884 2.12896 2.55159 3.05217 3.10745 3.25055 3.30819 3.32795 3.59882 3.63508 3.95122 4.22473 4.28455 4.34122 4.40448 4.68523 4.69477 4.73444 4.87221 4.96899 5.05319 5.07474 5.17434 5.18706 5.25861 5.45885 5.60550 5.64746 5.71007 5.83785 5.92667 6.04041 6.04375 6.19274 6.43281 6.56360 6.81845 7.07008 7.13239 7.35251 7.42671 7.52195 7.99837 8.38073 8.70628 8.88450 9.44591 10.98811 Molecular weight = 344.13amu Principal moments of inertia in cm(-1) A = 0.018019 B = 0.002324 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.551090 B =12045.071316 C =13200.891969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.592 5.592 3 C 0.217 3.783 4 C -0.533 4.533 5 H 0.075 0.925 6 C 0.073 3.927 7 N -0.895 5.895 8 Si 0.877 3.123 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.508 3.492 13 O -0.517 6.517 14 C 0.052 3.948 15 O -0.319 6.319 16 C 0.516 3.484 17 O -0.494 6.494 18 C -0.054 4.054 19 C -0.107 4.107 20 C 0.340 3.660 21 O -0.476 6.476 22 N -0.474 5.474 23 C 0.142 3.858 24 C -0.093 4.093 25 C -0.098 4.098 26 C -0.112 4.112 27 C -0.100 4.100 28 C -0.069 4.069 29 H 0.050 0.950 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.266 0.734 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.169 0.831 38 H 0.407 0.593 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.132 0.868 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.892 -24.213 10.153 26.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.325 5.325 3 C 0.097 3.903 4 C -0.572 4.572 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.704 3.296 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.190 1.190 12 C 0.293 3.707 13 O -0.392 6.392 14 C -0.025 4.025 15 O -0.234 6.234 16 C 0.360 3.640 17 O -0.383 6.383 18 C -0.063 4.063 19 C -0.128 4.128 20 C 0.145 3.855 21 O -0.284 6.284 22 N -0.194 5.194 23 C 0.022 3.978 24 C -0.111 4.111 25 C -0.118 4.118 26 C -0.130 4.130 27 C -0.118 4.118 28 C -0.072 4.072 29 H 0.069 0.931 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.186 0.814 38 H 0.266 0.734 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -5.095 -24.810 9.445 27.032 hybrid contribution -0.167 1.471 0.896 1.731 sum -5.262 -23.339 10.341 26.064 Atomic orbital electron populations 1.21778 0.80496 1.03477 1.00932 1.47762 1.06514 1.06520 1.71746 1.19740 0.92530 0.79347 0.98654 1.21296 1.37445 1.07319 0.91110 0.90691 1.24863 0.95144 0.97328 0.95645 1.69892 1.41166 1.23552 1.18681 0.86838 0.80169 0.79807 0.82799 1.19819 1.20992 1.19049 1.19661 0.88134 0.84213 0.78724 1.90721 1.13303 1.86678 1.48534 1.23000 0.90931 0.83764 1.04787 1.86595 1.39967 1.13769 1.83029 1.20771 0.86779 0.83257 0.73169 1.90700 1.15760 1.86142 1.45679 1.20286 0.92473 0.90390 1.03102 1.22839 0.92636 1.01589 0.95768 1.19065 0.85349 0.86931 0.94179 1.84795 1.14416 1.93875 1.35274 1.66975 1.15502 1.24687 1.12255 1.18386 0.86538 0.93523 0.99352 1.20797 0.95795 0.94485 1.00053 1.21009 0.92835 0.99811 0.98128 1.21122 1.00453 0.92350 0.99040 1.21755 0.94372 0.98976 0.96703 1.19520 0.95322 0.90693 1.01627 0.93104 0.89917 0.92113 0.94762 0.94313 0.92447 0.87965 0.88221 0.81380 0.73419 0.84246 0.84916 0.85017 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.24 59.84 0.61 1.69 16 2 N -0.59 -11.56 2.86 -182.96 -0.52 -12.08 16 3 C 0.22 5.11 4.23 -5.19 -0.02 5.09 16 4 C -0.53 -14.95 9.94 -34.44 -0.34 -15.30 16 5 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 6 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 7 N -0.89 -27.21 13.96 55.43 0.77 -26.43 16 8 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 12 C 0.51 9.96 7.75 -10.98 -0.09 9.87 16 13 O -0.52 -12.39 16.08 -14.10 -0.23 -12.62 16 14 C 0.05 0.76 4.51 36.01 0.16 0.92 16 15 O -0.32 -4.85 9.14 -47.21 -0.43 -5.28 16 16 C 0.52 6.98 7.90 34.65 0.27 7.25 16 17 O -0.49 -6.79 13.50 -19.23 -0.26 -7.05 16 18 C -0.05 -0.66 6.08 -102.52 -0.62 -1.29 16 19 C -0.11 -1.23 9.62 -38.72 -0.37 -1.60 16 20 C 0.34 3.84 7.69 -17.16 -0.13 3.71 16 21 O -0.48 -4.56 13.53 -18.50 -0.25 -4.81 16 22 N -0.47 -5.71 10.28 -11.13 -0.11 -5.82 16 23 C 0.14 1.62 6.62 -84.89 -0.56 1.06 16 24 C -0.09 -0.81 9.99 -39.44 -0.39 -1.21 16 25 C -0.10 -0.69 9.94 -39.95 -0.40 -1.09 16 26 C -0.11 -0.87 9.96 -39.87 -0.40 -1.27 16 27 C -0.10 -1.03 9.31 -39.64 -0.37 -1.40 16 28 C -0.07 -0.81 5.90 -104.71 -0.62 -1.43 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.21 8.07 -51.93 -0.42 0.79 16 31 H 0.06 0.69 6.44 -51.93 -0.33 0.36 16 32 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16 33 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 34 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 35 H 0.10 1.34 7.40 -51.93 -0.38 0.95 16 36 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.17 1.88 7.72 -52.49 -0.41 1.48 16 38 H 0.41 1.74 9.06 45.56 0.41 2.15 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 41 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.16 1.77 5.17 -52.48 -0.27 1.50 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -36.75 367.34 -7.36 -44.11 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.83 Total: 1.08 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: -3.36 Total: 7.00 kcal Atomic # 7 Polarization: -44.48 SS G_CDS: 0.14 Total: -44.34 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -1.17 Total: -29.77 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.75 -7.36 -44.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000011459519.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.448 kcal (2) G-P(sol) polarization free energy of solvation -36.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds